mRNA_P-littoralis_Contig195.77.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 178 bits (452), Expect = 3.700e-51 Identity = 83/147 (56.46%), Postives = 105/147 (71.43%), Query Frame = 2
Query: 473 QVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPADTHLDASGADFVQAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVLPRAVYRGRKCNVPEAWFMWY 913
+V+ ++ ++ + G VLD CGS DA+ +L V TND N RL ADTHLDA+ +F + RPDW+VTSPPY NAF+IL +AL V +VGV FKLRLSFLEP+KTRG+WLKDNPPS +VLPRA Y GR C+ EAWF+W+
Sbjct: 14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 110 bits (276), Expect = 7.420e-25 Identity = 63/141 (44.68%), Postives = 84/141 (59.57%), Query Frame = 2
Query: 446 LGRYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRL-----PADTHLDASGADFVQAY--GQGDNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTI 847
L RY + P+ V ++ +++ G VLD CG DA+ L +V TNDI++RL P DT+LDAS A F + + RPDWV+TSPPYK A +K AL +A GV KL LSFLEP RG WL+ NPP++ +
Sbjct: 80 LDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.350e-15 Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 2
Query: 755 VGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVLPRAVYRGRKCNVPEAWFMWYT 916
+GV FKLRL+FL P+K+RG+WLKDNPP ++LPRA YR R+C+ E WF+W T
Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR) HSP 1 Score: 77.8 bits (190), Expect = 5.320e-13 Identity = 56/175 (32.00%), Postives = 89/175 (50.86%), Query Frame = 2
Query: 455 YPSLPQQVNDMMAHLDV--GGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRL-PADTHLDASGADFVQAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVL----PRAVYRG--RKCNVPEAWFMW-----YTGEKAHCP 937
YP+ Q + ++ +D+ G +L+ C D + +L V +DI+ + P T DA+ F Y + R +WV+T+PP+ A AIL A A VGV F LRLS+LEP+K RG W ++ +++ ++ PR + G R +V AW +W + + HCP
Sbjct: 18 YPTPAQLTHKLLEVVDIDPGVTILEPCAGEGD-ILNVLQYYNVGVVASDISWQPHPGQTTTDATERLFWH-YWKNRLRFEWVITNPPFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVWRKDWSWKAKGCHCP 190
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 8.550e-9 Identity = 52/152 (34.21%), Postives = 70/152 (46.05%), Query Frame = 2
Query: 398 SGRGKLVVDRDRT-KGLLGRYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPADTHLDASGADFVQAYGQGD--NRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTR------GQWLKD 826
+G G +++ RT + L RY + P V+ + A + + G VLD CG DAV + GF T+LDAS F + + + +PDWVVTSPPYK + + AL VA GV KL L P T G W D
Sbjct: 28 AGPGAPLLNLSRTTRRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQ-----GFGGTC----------TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPVPTGEVGEFWGVWYTD 164
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A2W4YX34_9CYAN (Uncharacterized protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4YX34_9CYAN) HSP 1 Score: 64.3 bits (155), Expect = 2.600e-8 Identity = 49/172 (28.49%), Postives = 80/172 (46.51%), Query Frame = 2
Query: 443 LLGRYPSLPQQVN-DMMAHLDVGGLVLDCC---GSTRDAVCRLLTERGFRVQTNDINSRLPADTHLDASGADFVQAYGQ---GDNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVL---PRAVYRG---RKCNVPEAWFMWYTG 919
++G Y P+ V ++ + + G V +CC G+ D + L V +D++ P DA+ F +++ G + DW VT+PP+ A IL A ++ G F LRLS+LEP+ R WL + L ++ PR +R + +V AW +W G
Sbjct: 22 MVGDYYPTPEGVTRSLLNRVPITGTVFECCAGHGAISD-ILELTDSTERLVLQSDLSWPSPNGELRDATEQRFWESWATLEAGGSPIDWTVTNPPFCEAEQILPLAWEYSRQGCAFLLRLSYLEPTAGRADWLNEMADHLRYLITLNPRPKFRRDTKKTDSVTAAWLVWEKG 192
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5K266_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K266_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 1.590e-7 Identity = 41/102 (40.20%), Postives = 51/102 (50.00%), Query Frame = 2
Query: 425 RDRTKGLLGRYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPA------DTHLDASGADFVQAYGQGD--NRPDWVVTSPP 706
R + LL R + V ++ +D+ G VLD CG DAV RLL + TNDI+ RL D HLDAS F A+ + RPDWVV SPP
Sbjct: 73 RQLQRRLLDRCCTSDAAVEVLLRAVDISGRVLDMCGGPCDAVARLLGAT-CELITNDISGRLSPGSKKAPDMHLDASATTFCAAFLENSIQQRPDWVVKSPP 173
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.870e-6 Identity = 30/49 (61.22%), Postives = 33/49 (67.35%), Query Frame = -3
Query: 676 FNHCPRVLEGSRNDSLSLKTTPT*ATCSACFRMANAFLYGGLVTTQSGR 822
+HCP VL GSR SLSL TPT A F++A A LYGGLVTT SGR
Sbjct: 171 LSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGR 219
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: B8IAN3_METNO (Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060) TaxID=460265 RepID=B8IAN3_METNO) HSP 1 Score: 54.3 bits (129), Expect = 8.110e-5 Identity = 43/151 (28.48%), Postives = 64/151 (42.38%), Query Frame = 2
Query: 545 AVCRLLTERGFRVQTNDINSRLPADTHLDASGADF---VQA-----YGQG------------DNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVLPRAVYRGRKCNVPEA-------WFMWYT 916
A+C LL ERG + + + H+ AD+ V+A YG+G +RPDW++T+PP+ + AL +A+VGV +R S+LE + + PPSL V R P A W +W T
Sbjct: 32 ALCELLRERGVPIGGQQVWDPACGEGHMAGPLADYFRHVEASDVFDYGRGYRVTDFLDPAGHADRPDWIITNPPFSTSLEFALIALPLARVGVALLVRTSWLEGGERYAKLFGPTPPSLVAQFCERVPMTRGRWDPAATTATSYTWVVWRT 182 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig195.77.3 >prot_P-littoralis_Contig195.77.3 ID=prot_P-littoralis_Contig195.77.3|Name=mRNA_P-littoralis_Contig195.77.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp MMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPADTHLDAback to top mRNA from alignment at P-littoralis_Contig195:343929..346011- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig195.77.3 ID=mRNA_P-littoralis_Contig195.77.3|Name=mRNA_P-littoralis_Contig195.77.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2083bp|location=Sequence derived from alignment at P-littoralis_Contig195:343929..346011- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig195:343929..346011- >mRNA_P-littoralis_Contig195.77.3 ID=mRNA_P-littoralis_Contig195.77.3|Name=mRNA_P-littoralis_Contig195.77.3|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig195:343929..346011- (Pylaiella littoralis U1_48)back to top |