mRNA_P-littoralis_Contig195.77.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.77.3
Unique NamemRNA_P-littoralis_Contig195.77.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.700e-51
Identity = 83/147 (56.46%), Postives = 105/147 (71.43%), Query Frame = 2
Query:  473 QVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPADTHLDASGADFVQAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVLPRAVYRGRKCNVPEAWFMWY 913
            +V+ ++ ++ + G VLD CGS  DA+  +L      V TND N RL ADTHLDA+  +F   +     RPDW+VTSPPY NAF+IL +AL V +VGV FKLRLSFLEP+KTRG+WLKDNPPS  +VLPRA Y GR C+  EAWF+W+
Sbjct:   14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160          
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 7.420e-25
Identity = 63/141 (44.68%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  446 LGRYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRL-----PADTHLDASGADFVQAY--GQGDNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTI 847
            L RY + P+ V  ++  +++ G VLD CG   DA+   L     +V TNDI++RL     P DT+LDAS A F   +   +   RPDWV+TSPPYK A   +K AL +A  GV  KL LSFLEP   RG WL+ NPP++ +
Sbjct:   80 LDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219          
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.350e-15
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  755 VGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVLPRAVYRGRKCNVPEAWFMWYT 916
            +GV FKLRL+FL P+K+RG+WLKDNPP   ++LPRA YR R+C+  E WF+W T
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54          
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR)

HSP 1 Score: 77.8 bits (190), Expect = 5.320e-13
Identity = 56/175 (32.00%), Postives = 89/175 (50.86%), Query Frame = 2
Query:  455 YPSLPQQVNDMMAHLDV--GGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRL-PADTHLDASGADFVQAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVL----PRAVYRG--RKCNVPEAWFMW-----YTGEKAHCP 937
            YP+  Q  + ++  +D+  G  +L+ C    D +  +L      V  +DI+ +  P  T  DA+   F   Y +   R +WV+T+PP+  A AIL  A   A VGV F LRLS+LEP+K RG W  ++  +++ ++    PR  + G  R  +V  AW +W     +  +  HCP
Sbjct:   18 YPTPAQLTHKLLEVVDIDPGVTILEPCAGEGD-ILNVLQYYNVGVVASDISWQPHPGQTTTDATERLFWH-YWKNRLRFEWVITNPPFNEASAILPLAYKHASVGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVWRKDWSWKAKGCHCP 190          
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.550e-9
Identity = 52/152 (34.21%), Postives = 70/152 (46.05%), Query Frame = 2
Query:  398 SGRGKLVVDRDRT-KGLLGRYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPADTHLDASGADFVQAYGQGD--NRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTR------GQWLKD 826
            +G G  +++  RT +  L RY + P  V+ + A + + G VLD CG   DAV +     GF              T+LDAS   F   + + +   +PDWVVTSPPYK +   +  AL VA  GV  KL L    P  T       G W  D
Sbjct:   28 AGPGAPLLNLSRTTRRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQ-----GFGGTC----------TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPVPTGEVGEFWGVWYTD 164          
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A2W4YX34_9CYAN (Uncharacterized protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4YX34_9CYAN)

HSP 1 Score: 64.3 bits (155), Expect = 2.600e-8
Identity = 49/172 (28.49%), Postives = 80/172 (46.51%), Query Frame = 2
Query:  443 LLGRYPSLPQQVN-DMMAHLDVGGLVLDCC---GSTRDAVCRLLTERGFRVQTNDINSRLPADTHLDASGADFVQAYGQ---GDNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVL---PRAVYRG---RKCNVPEAWFMWYTG 919
            ++G Y   P+ V   ++  + + G V +CC   G+  D +  L       V  +D++   P     DA+   F +++     G +  DW VT+PP+  A  IL  A   ++ G  F LRLS+LEP+  R  WL +    L  ++   PR  +R    +  +V  AW +W  G
Sbjct:   22 MVGDYYPTPEGVTRSLLNRVPITGTVFECCAGHGAISD-ILELTDSTERLVLQSDLSWPSPNGELRDATEQRFWESWATLEAGGSPIDWTVTNPPFCEAEQILPLAWEYSRQGCAFLLRLSYLEPTAGRADWLNEMADHLRYLITLNPRPKFRRDTKKTDSVTAAWLVWEKG 192          
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5K266_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K266_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.590e-7
Identity = 41/102 (40.20%), Postives = 51/102 (50.00%), Query Frame = 2
Query:  425 RDRTKGLLGRYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPA------DTHLDASGADFVQAYGQGD--NRPDWVVTSPP 706
            R   + LL R  +    V  ++  +D+ G VLD CG   DAV RLL      + TNDI+ RL        D HLDAS   F  A+ +     RPDWVV SPP
Sbjct:   73 RQLQRRLLDRCCTSDAAVEVLLRAVDISGRVLDMCGGPCDAVARLLGAT-CELITNDISGRLSPGSKKAPDMHLDASATTFCAAFLENSIQQRPDWVVKSPP 173          
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.870e-6
Identity = 30/49 (61.22%), Postives = 33/49 (67.35%), Query Frame = -3
Query:  676 FNHCPRVLEGSRNDSLSLKTTPT*ATCSACFRMANAFLYGGLVTTQSGR 822
             +HCP VL GSR  SLSL  TPT     A F++A A LYGGLVTT SGR
Sbjct:  171 LSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGR 219          
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Match: B8IAN3_METNO (Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060) TaxID=460265 RepID=B8IAN3_METNO)

HSP 1 Score: 54.3 bits (129), Expect = 8.110e-5
Identity = 43/151 (28.48%), Postives = 64/151 (42.38%), Query Frame = 2
Query:  545 AVCRLLTERGFRVQTNDINSRLPADTHLDASGADF---VQA-----YGQG------------DNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLSFLEPSKTRGQWLKDNPPSLTIVLPRAVYRGRKCNVPEA-------WFMWYT 916
            A+C LL ERG  +    +      + H+    AD+   V+A     YG+G             +RPDW++T+PP+  +      AL +A+VGV   +R S+LE  +   +     PPSL       V   R    P A       W +W T
Sbjct:   32 ALCELLRERGVPIGGQQVWDPACGEGHMAGPLADYFRHVEASDVFDYGRGYRVTDFLDPAGHADRPDWIITNPPFSTSLEFALIALPLARVGVALLVRTSWLEGGERYAKLFGPTPPSLVAQFCERVPMTRGRWDPAATTATSYTWVVWRT 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.77.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE3.700e-5156.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI7.420e-2544.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6T5_9PHAE1.350e-1561.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A433N1N0_CHLFR5.320e-1332.00Uncharacterized protein n=1 Tax=Chlorogloeopsis fr... [more]
A0A6H5L1N5_9PHAE8.550e-934.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2W4YX34_9CYAN2.600e-828.49Uncharacterized protein n=1 Tax=Phormidesmis pries... [more]
A0A6H5K266_9PHAE1.590e-740.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE1.870e-661.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B8IAN3_METNO8.110e-528.48Uncharacterized protein n=1 Tax=Methylobacterium n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:343929..346011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
PFAMsCTP_transf_like,Glyco_trans_1_4,Glycos_transf_2,Methyltransf_11,Methyltransf_12,Methyltransf_23,RrnaAD
Model size1178
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons3
Evalue7.15e-15
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria
EC2.1.1.182
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
Cds size483
COG categoryJ
CAZyGT2,GT4
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.4093099-UTR-P-littoralis_Contig195:343928..3441391680789937.4093099-UTR-P-littoralis_Contig195:343928..344139Pylaiella littoralis U1_48UTRP-littoralis_Contig195 343929..344139 -
1680789937.4508727-UTR-P-littoralis_Contig195:345034..3450431680789937.4508727-UTR-P-littoralis_Contig195:345034..345043Pylaiella littoralis U1_48UTRP-littoralis_Contig195 345035..345043 -
1680789937.461519-UTR-P-littoralis_Contig195:345536..3460111680789937.461519-UTR-P-littoralis_Contig195:345536..346011Pylaiella littoralis U1_48UTRP-littoralis_Contig195 345537..346011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.4244063-CDS-P-littoralis_Contig195:344139..3445001680789937.4244063-CDS-P-littoralis_Contig195:344139..344500Pylaiella littoralis U1_48CDSP-littoralis_Contig195 344140..344500 -
1680789937.4372509-CDS-P-littoralis_Contig195:344912..3450341680789937.4372509-CDS-P-littoralis_Contig195:344912..345034Pylaiella littoralis U1_48CDSP-littoralis_Contig195 344913..345034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.77.3prot_P-littoralis_Contig195.77.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 344140..345034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.77.3

>prot_P-littoralis_Contig195.77.3 ID=prot_P-littoralis_Contig195.77.3|Name=mRNA_P-littoralis_Contig195.77.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
MMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPADTHLDA
SGADFVQAYGQGDNRPDWVVTSPPYKNAFAILKQALHVAQVGVVFKLRLS
FLEPSKTRGQWLKDNPPSLTIVLPRAVYRGRKCNVPEAWFMWYTGEKAHC
PIAQQVVFAV*
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mRNA from alignment at P-littoralis_Contig195:343929..346011-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.77.3 ID=mRNA_P-littoralis_Contig195.77.3|Name=mRNA_P-littoralis_Contig195.77.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2083bp|location=Sequence derived from alignment at P-littoralis_Contig195:343929..346011- (Pylaiella littoralis U1_48)
AGGGAGGAACTCCGCCTTGCTTCCACTCACGTTTTGCTTGTCCTGGTTTC TGTTCAACAACTGCTGCTCAGCAAAACGCACGTCCACGGCCATGAGCGTG AGAGGGAGGCGAGGTGCGTGTGGAAGGTCCGATCACGGCCGCCCCAGCGA AGACGGGACTGAAAACTTGTGCTGCGCCTGTAGGCGCCCTGGCCCCAGCG ACAACTCAACTACGCGAGCTTGGCGACACATTGGAGCCGGAGAGTGCTGG GACTCTCTTGTAGAATGGGAAGCTGCGGCGGCCGGCACGTGGCCCCACCG GCGAGACTTGCTGCAAGAGCCTCTTCGGGCGAATGAGTGCATATGCTCGC GGGTTGATTGTGTTAGTGGGCTGTAAGTTTCGGAAGCGACGTGCCGCAGC GGCCGGGGGAAGCTCGTCGTTGATAGAGACCGGACAAAGGGCCTTCTTGG GCGGTATCCGTCGCTTCCTCAGCAGGTGATCGTTAGCCTGTGTGCATGTT TGTAAAGCGTGGCCGTGTAGACTGCCTGTGAGAAAAAGTGTGACAGTGCA GACTGCTGTAAACTGCTGTAGACTGCGGTAGGGGAAGGGTGGCGATGTAG GCTGCTGCATACTACTGTAGGGGAGTGGGTGACCAAGAATGTTGCTGCCG GCTGATGAAGAAAATCGGGTGACCAGAATGACTGCTGTACGACAGCGGAG AGCTGTATTTCGAGCTGAATTTTCAGACGGTCGGCACCTGAAGTGGTCAG GTTCGCCCTTCTACAATAAATTCGCCGGAAAAAAAAGCAGCCAAGTGTGT ACACTAATCTGTTGGTTTTTTTTTTGCACTCGTCTTTATTTAATCGTGGA CAACGCGAGAGCACAAGCAAGCCGATGGGGCTGCTCGGCGGTGTATGGAT CGTTCTTTTGATGTATATCAACAATTTCAACATGATACTGAAATGAATAT CGGCATCCCTTGGGACAGGTGAACGACATGATGGCCCACTTGGACGTCGG TGGTCTTGTTCTTGACTGCTGCGGGAGCACGAGAGATGCCGTGTGTCGGC TGCTGACAGAAAGAGGCTTTCGTGTTCAGACGAATGACATCAACAGCAGG CAAGCGAGATAGACAATTGCATGTACTAACGGCAGTGCAAACCAATTATC CAATGCCGCTCTCTCGTCCACGTGCTAATTTACACGTAATGGTGTGATAT ATCGCAAGGGCGGGATAATAAAAATAAGCGAAACAAATATTTTGCCTCCT GAAGAATAACACTGCTTTTCCTCAACGTTGGCGATTCTTGATTTACGTTA GGCGACCCAAAATGCCCTGATGTTTGAGCCGACAAATCTCGGAAGAAAGC TTTTCGGGTCATCGCCTGCGGAGGCTAAGCCTTTCTGAAAGGGGTGGTGA TCATGGTGTACACGATACCAAATTCGCCACAGGCTCACAAATATTCGCAA ACACGATCCACGTTCGTTCTGTCGCCTACGCGTGCATGCCTGTTTTGTTC CCGCACGACAGACTGCCAGCGGACACACACCTCGATGCCTCGGGTGCAGA TTTTGTGCAGGCGTACGGGCAGGGAGATAATCGCCCCGACTGGGTCGTCA CGAGCCCTCCATACAAAAATGCATTCGCCATCCTGAAGCAGGCACTGCAT GTAGCTCAAGTCGGCGTTGTTTTCAAGCTCAGGCTGTCGTTCCTCGAGCC TTCTAAAACTCGTGGACAGTGGTTGAAAGACAACCCACCTTCTCTCACGA TAGTTCTGCCCCGCGCAGTTTACCGAGGTAGGAAATGTAATGTCCCGGAG GCATGGTTCATGTGGTACACTGGTGAAAAGGCTCATTGTCCTATTGCACA GCAGGTGGTGTTTGCCGTCTGAGCCTCTCTCACGTTGAATCTGTTACGGC AGGTACCGACGAACGCGTGTGACGAACGACCTTTCTTTGGTCGGATTGTA CTCCCGCCGTAAAGAGGGAGCCTTCCCCTGGTTTCATCTCCCCAACCGAA TGTATGGGTACCCCCGAATGCCAGGGAGGCCGTAGGGGATACTGGCACCC TATTGGAAGGGCGATTACTTGACTCTTGGAGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:343929..346011-

>mRNA_P-littoralis_Contig195.77.3 ID=mRNA_P-littoralis_Contig195.77.3|Name=mRNA_P-littoralis_Contig195.77.3|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig195:343929..346011- (Pylaiella littoralis U1_48)
ATGATGGCCCACTTGGACGTCGGTGGTCTTGTTCTTGACTGCTGCGGGAG
CACGAGAGATGCCGTGTGTCGGCTGCTGACAGAAAGAGGCTTTCGTGTTC
AGACGAATGACATCAACAGCAGACTGCCAGCGGACACACACCTCGATGCC
TCGGGTGCAGATTTTGTGCAGGCGTACGGGCAGGGAGATAATCGCCCCGA
CTGGGTCGTCACGAGCCCTCCATACAAAAATGCATTCGCCATCCTGAAGC
AGGCACTGCATGTAGCTCAAGTCGGCGTTGTTTTCAAGCTCAGGCTGTCG
TTCCTCGAGCCTTCTAAAACTCGTGGACAGTGGTTGAAAGACAACCCACC
TTCTCTCACGATAGTTCTGCCCCGCGCAGTTTACCGAGGTAGGAAATGTA
ATGTCCCGGAGGCATGGTTCATGTGGTACACTGGTGAAAAGGCTCATTGT
CCTATTGCACAGCAGGTGGTGTTTGCCGTCTGA
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