mRNA_P-littoralis_Contig195.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.26.1
Unique NamemRNA_P-littoralis_Contig195.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:128276..129387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789935.827605-CDS-P-littoralis_Contig195:128275..1284871680789935.827605-CDS-P-littoralis_Contig195:128275..128487Pylaiella littoralis U1_48CDSP-littoralis_Contig195 128276..128487 -
1680789935.8403697-CDS-P-littoralis_Contig195:129344..1293871680789935.8403697-CDS-P-littoralis_Contig195:129344..129387Pylaiella littoralis U1_48CDSP-littoralis_Contig195 129345..129387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.26.1prot_P-littoralis_Contig195.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 128276..129387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.26.1

>prot_P-littoralis_Contig195.26.1 ID=prot_P-littoralis_Contig195.26.1|Name=mRNA_P-littoralis_Contig195.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
RLHAGRGSHEKESGGARSAVVCSASHPQRRTPLLLDRPSRTSAASQDYHD
HGRRHGAESSSTRKTRCFGATAFWTVLVQGTSTAS
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mRNA from alignment at P-littoralis_Contig195:128276..129387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.26.1 ID=mRNA_P-littoralis_Contig195.26.1|Name=mRNA_P-littoralis_Contig195.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1112bp|location=Sequence derived from alignment at P-littoralis_Contig195:128276..129387- (Pylaiella littoralis U1_48)
CGCTTACATGCAGGTCGTGGGAGCCATGAAAAGGAATCAGGAGGTGAGTG
TCCGTACGAACCGGCGATTTCTACTCCTCGTATCTCGCTCCCTGCGGCCG
CCGCGGGGTAACCCTGGTCGGCGCAGGTGAAGACAATTTCGCGGGGGCTG
ACACCAGCCCTCTCGCGCCCGCGCGATATCATGCGTAAAATCCATGTTTC
GCCTTCGAAGGCCAGTCAACGAAAAATGTTTTTTTCCTCTCTTCTATCTT
TTATTTTATATTTCACTTGGTGTCTATGTACCCCGCTTACATACGGCGAA
AATACTCCAGTGACACTCTAAGGCATATATTTTATTTTGTTTTTATATTT
CACTTGGTGTATATATACCCCTCTTACAAACGGCGTAAATACTGCAGTAA
CATTCGGAGGCACACGCACGCGTATGTTTGAGGCTCCTGAGTTGTATCCT
GCGTCTGTACGGCAGAAATACTGCAGTGACACTCGGAGGCACACGCTCGT
GTCTGTATACTGTTCGGAGAAGGTTCGAACGCGAGTCAAATATACTCCGA
GTACATGTCATACGGCCAACGGTACTGCAGGGACATTGTATCTTACAACG
ACAGATTCGCACGAACGCAGTAGGAGGCCGGATGACGGGCCGTAGTCACA
CGAACGAACAAAACGCACGAGCCAACGAAGTAAGCGGCCAAATGTTGGGT
CTTAGTTTCGGTTTCACTGTGTCAACGGACGCACAACCCCTTTCGCTTCC
AACGTCTGCCTCACGATCGAAGCACCATGCCGAGTGACGGGCCATCTTTC
TCGCTCGCTTCAACGAACAAACGAACACGAATACAGCACGCGCAACACGA
ATGATTCACGGAACGATACCCTCTGTCTCTCCCCTACGCCTGGGCGGCAG
GTGCTCGCAGCGCTGTTGTCTGTTCTGCGAGTCACCCGCAACGCCGAACG
CCGCTTCTCCTGGACCGACCTTCTCGGACGTCTGCTGCAAGCCAAGACTA
TCATGATCACGGTCGGCGACATGGCGCCGAAAGCTCAAGTACTCGGAAGA
CGAGATGCTTCGGGGCGACTGCCTTTTGGACGGTCTTGGTCCAGGGAACG
AGCACAGCGTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:128276..129387-

>mRNA_P-littoralis_Contig195.26.1 ID=mRNA_P-littoralis_Contig195.26.1|Name=mRNA_P-littoralis_Contig195.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig195:128276..129387- (Pylaiella littoralis U1_48)
CGCTTACATGCAGGTCGTGGGAGCCATGAAAAGGAATCAGGAGGTGCTCG
CAGCGCTGTTGTCTGTTCTGCGAGTCACCCGCAACGCCGAACGCCGCTTC
TCCTGGACCGACCTTCTCGGACGTCTGCTGCAAGCCAAGACTATCATGAT
CACGGTCGGCGACATGGCGCCGAAAGCTCAAGTACTCGGAAGACGAGATG
CTTCGGGGCGACTGCCTTTTGGACGGTCTTGGTCCAGGGAACGAGCACAG
CGTCC
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