mRNA_P-littoralis_Contig195.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.21.1
Unique NamemRNA_P-littoralis_Contig195.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:91496..98239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size922
Hectar predicted targeting categoryother localisation
Exons2
Cds size612
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789935.7670639-CDS-P-littoralis_Contig195:91495..917941680789935.7670639-CDS-P-littoralis_Contig195:91495..91794Pylaiella littoralis U1_48CDSP-littoralis_Contig195 91496..91794 -
1680789935.7770283-CDS-P-littoralis_Contig195:97617..979301680789935.7770283-CDS-P-littoralis_Contig195:97617..97930Pylaiella littoralis U1_48CDSP-littoralis_Contig195 97618..97930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789935.7897687-UTR-P-littoralis_Contig195:97930..982391680789935.7897687-UTR-P-littoralis_Contig195:97930..98239Pylaiella littoralis U1_48UTRP-littoralis_Contig195 97931..98239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.21.1prot_P-littoralis_Contig195.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 91496..97930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.21.1

>prot_P-littoralis_Contig195.21.1 ID=prot_P-littoralis_Contig195.21.1|Name=mRNA_P-littoralis_Contig195.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=204bp
MSEVGKEKDDGKREEGDGQQQQGKAPSAVDSSAGAGAGTGADGGAGAGAD
AATAAATAATLHEPKHRIIRTPQSPAPKRATRASTGAPIALTAKGSLYKA
NKDTGAGAGAGATADADAGAREHAHAFGGRFSSSSSSSPSSAASGWSSSN
TTFGSPPGVSTAAAAAAIAAVSRAPPFSRTAANTGTGTGRRISGSGGGSG
GGGG
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mRNA from alignment at P-littoralis_Contig195:91496..98239-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.21.1 ID=mRNA_P-littoralis_Contig195.21.1|Name=mRNA_P-littoralis_Contig195.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6744bp|location=Sequence derived from alignment at P-littoralis_Contig195:91496..98239- (Pylaiella littoralis U1_48)
CTGGTCTAAAACCACGAAAAAGAGCCGAAAGAGACAGGGAGGGGGAGCAC
GACAACGAGTCTTTGTTGTGTAGAACACCGACACAGGCACAGAGGGAGAG
TCAGACCAAGATCAACGAAAGGAAGGGGTTACAGCACAAGGCGATCACGG
AGTGGCGGTGCGTGCCTTTCCCTGGTGTGCGGTGGTTTTCCGGGTTGATT
GTGGACAACGGCAGCCTCTCTGTGTGCCGAAGACATCGGCAGTGCGGAGC
CGGGCGGGTAATTCTTGAACACATAATATATCGGTGTTGGGGACTCACCG
CCAAGTAGCATGTCTGAGGTTGGCAAAGAGAAAGACGACGGGAAGCGGGA
GGAGGGAGATGGACAGCAGCAGCAAGGCAAAGCTCCTTCTGCTGTCGATT
CTTCTGCTGGTGCTGGTGCTGGTACTGGTGCGGATGGTGGTGCTGGTGCT
GGTGCTGATGCTGCAACAGCCGCAGCAACGGCAGCGACGCTGCACGAGCC
TAAACATCGCATTATCCGCACGCCTCAGTCGCCGGCGCCTAAGCGAGCCA
CGAGGGCATCGACAGGTGCCCCAATCGCCCTGACCGCGAAGGGGTCCCTC
TACAAGGCAAACAAGGACACGGGTGAGTGAGAGAGGAAGCAGGAAAAGGG
AAGGCACTTTCAGGTGCTCTTGCTGGTTGCGTGATGATGGCGAGCGGGGG
TTCGAGTCGAATAGGTTTGAAAAATGACGAACGCAATACTATATCACATC
ATATGCATACATGATGCTGGACGAGTATCATGAGAAAAAATAATCTAAAT
GCGCAGGCAGGCAGTGGGCAGCACGCCGTTGAGCCGCAATTGCATACATT
TTCGTAGTAAAAATATTGCATGCGCGCTTGTCTGGTCTGATGTCTGATGT
CTGAAGACTGAAGACTGCTTCGAAGGCACATCCCACAAGGAGGGCAGTCG
CATGCGCAAGGACAAAAACCCGTCCGAGATATCATATCATACATACAACT
GCTGTTGTTGCTGTACCGGCAGTGCCCGCAGAGCGTGAAACGCGATGATC
GTACAGAAGTACTCCGCTTTGTGAACGGTGTTGTGCGTTTGGCATGTTTC
GACGCGGGCGTGTTTCTTTTAGGCGACCTATTCGTAACAGAAGTAGTTGA
GTCTGTTGTATGCGCTGCTCATCTTGCCGCTGCTGCTGCTGCCGCTGCCT
GCTGCTGTTGCCCCCACCGAGCATCCCACATAAAACATCAGTACACTAAT
CGTATGAATGACCTTCTACAAGTCTTTCATATGATACCTTGATATGAACG
AGTTTATATCACACTCCGGAGTATCATATAGCACTCTCTTCGCCCAAGTT
TGAAATTTATACGACGCACAGCAGTTTGGGATCACCTAAAATTTGTTTGG
TACTCAATATCCGGTCGCCCCGGTGGTTCAGTTAGTTGGTTATCCACGCA
ACCTTCTGACATTCACGCGTGAGTTCGAATCCCAGTACAGTAGCACGATC
TGGGGCATTTTCTCACATTGCGCGTGGAGAAAGTGGAAAGCGATCAATTT
GTGAGTAACCAAAATTCGATCGCACCATCATCGACGAGGGAAAGGGATTG
CTGTCCCCTTTCTCGCGATAAAAGCTCAACCAAAAAGGCGAGCACCGCAG
AGGGAAGTGGAGAAAAAAAAAAAAAACTCCTTTGTTGACTTCCCCGTTTG
TGACCCCGCTTGGAGCGTCTACGTACAGTACCCGAAAGGTGTAGAGTGGC
GTTCAAAATACCTACCCGAAAGGTGTAGAAGTGGCGTCCAAAAGAACTAC
TGTACCCGAAAGGTGTAAAGTGGCGTCCAATTAAAGGGATGATAACACAC
ACACACACACTCCGGAGTATTTGTTTGGTATAAGTGAGGCGATGTCAGTA
CTCCCTACCTGGTATACGTAAAAGTAAAGTAGATGCTGTACAAGTACCAT
GCACACGCGTATCTCATCATATCACGCGTATCTCATCATATTCATATCTC
ATCATATTCATATACTACTGTTCGTACTGCTGTATGATATCAAATACTAA
TACTACTCGAAGTTCCTCGAGTACTTCGAAGTACTGTATAATGTTGTTTG
TTGTTGTTGTTGATTCTCACATTAGCTCACTAATGTGCCTGGTTTGTGAC
CACGGGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAACTAC
CGCCGCAGTCTAGCCCGTGGTCACAAACTAGGCACATATTGGACTATGTG
ATCACCCACAGAGTCAAATCAGATATGGTACCGTTGGGGTACCATCTGAT
GTGGCCAAAGTGTGTGTGTGTTGTCATCCCTTTAATTGGACGCCACTCTA
CACCTTTCGGGTAGGTAGACGCTCCAAGCGGGGTCACACAGGGGGAAATC
AACAAAGGAGTTTTTTTTTTTTTCTCCACTTCCCTCTGCGGTGCTTGCCT
TTTTGGTTGAGCTTTTGTCGCGAGAAAGGGTACAGCAATTCCTTTCCCTC
GTCGATGGTACGATCGAATTTTGTGTACTCACGAATCGATCGCTTTCCAG
AAAAAGCCCTAGATCGTGCTACTGCACTGGGATTCGAACTCACGCGTGAA
TGTCAGCAGGTTGCGAGGATTACCAACTGAACCACCGGGGCGACCGGTCA
TGTAGTCTCAAAGTACCAAATAAAATACAGAAAAAAAATAACAGGTTCGA
AAGAAAAAACAAAAAATTGGAAACAGCAGTGTGTGTGTGTGTTGTCATCC
CTTTAATTGGATGCCACTCTGCACCTTTCGGGTAGGTAGACGCTCCAACT
GGGGTCACACGGGGGGAAGTCAACATGAGAGCTTTTTTTTTTTTCTCCAC
TTCCCTCTGTGGTGCTTGCCTCTTTGGTTGAGCTTTTATGACAAACAAAA
AATAACGAAGATATGATACGAAGGATGTTTGGTTACTACTTCTGCACACG
ATATATGCAAGCCATGCAAGTACATCACCTGCGCTGGTACTCGTAGTCCT
TCGTGCTACTTCTGTACAGCAGTTCTTCATACATTTATGATAAACGCCAC
GCTTCTTGGTGTGTAATTGTGCTGTGGTGCTCGGGCGTCCCTCCTACTCT
GTAAAGACAGCATTTTGCTTTGCACGTCAAAGTACGAAGTACGAAGTACC
CACAGCCAGTCGCAGAAGCTATCATCATCTGCGCCCATATACTTTAGTGT
ATGCGTACACGATACCTGCAGGAAGTTCCTGTTCGAGTTGCACGGAGATG
AGGCAATCAGCCCTTCCCTACTCTGTTGTAATACTGCTGTATACGGATTA
TATGATATGTGCTTCGTTTATGATACGAAGTACTTCGAATGTGATATTTT
GATGTACAGAAGTAACCGACGGAGTTTCGAAGTACATATATATGATACTC
GAAGGTATGTTATAAGAGGAGAGATGAGCGGCCAGCCCCCTCACTTCTGT
GTTCCACAAGTACGTACTGCTGCATCCGAGTACTGTATACCACAGGTAAA
TTCTGCCTCCCTCTGTTTTAATTCGTGTGGAGACAACACGCATGACCTGT
GCTAATTGCTGCATTTTGTCTTTTTATCTATTGACTGCTGTACGCGACGG
CAGTTTGTTACCACGCCGCGTTGAACGAGAGCATAGCAAGAAGCTCGAGG
AGTGGGTTTCACAGTACAGCGGCAGTGCTCCGCATGCAAATACACCGGAG
GTCAAGTAACTCGAGTTCGATTCCCCGTGTCGTGAACGGAGTATTTTTCT
CGGCCCATGAGACCCCCGTACGGCAGTGCATGTCATGCACCTCCAAGTAC
ACTTGATGCACCATGTACTTCGTATGTGTTTCGTCGTCCCGTCTGTTCTG
AACGCCAGCCTGCAGTCTACCAACATCTTTTCAAACAGACCCAGGCCTAA
ACAGATAGGTATCCCACACATTCAAAAATATATGTGCTGCACTTCATACA
GTAGCGTACACGGCACACCGCAGTGCTAAGGCCCCTTCTTAACCGAAATA
AGCTCTGGAGTCCGAACCCTGAGGCTGAGAGTTAGAGCCAGAAGATCCAA
TGAAGTGTCGGAGCAAAAGGAAGTGTGTTCTGTCTTGTAACCGAATTTGC
CAAAACGAGACCGAGACACGAAGTTCCAAGTTCAGTTCGCGGCAACATTC
ACGAACAGCCCACACGGCGACAGAAAGAGAACGGAGGAGCTAGCTGTTGT
TTCTGATATGATAGGTCCGGCGTGGGACTTCCTGTGCTGCGGCGTGTCCA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGTAGCACGGTGCCACGTA
TATACGGGAGCCGGGCACCACCCTTCCTTTGGACAAAGTCTTTAGAACAG
AGCGGTGGACAAGCTTTCTCAGGCCGGGAGCGAAACTGCTGTGTACCAGT
ACAAAAGTATACTTCGTGTGTATGTAGGTGGTATGGGTGTAGATCGACAC
ACTCGCGGCGCCAGCCAGTGGATGTTGTGATGCTGGGGCTGATGAAGCTG
CTGCTACTGCTATGCTACTGCTGCTGGACCCACTGGTGGCGGTACTGCTA
CTAGCTGCGCTCCTCTCTCCCTGTCATACTGCTGTTGTTTTTGTTTGGCA
CTCGAAGAGTCGAAGAGGACATCCTTGTCTTTGCAGATGGGCTGTTCGGT
TCGCAAGTTAATGCCCTCCTCCTGTGGGTTCGTGCTGACGTGGCCACCTT
CCGAAGCAAGCCGGAGTCATATTTTGTGGTCTAATGTTCCCATTCGCCAT
CTCTCAGAGCAACTCTCAGCCAAAAAAAATGTTTGATGAAAGTAAGTCCG
CGATTGAGTCTGAGAGGTCCGGTCCGAATAGCGAACGCTGAAAAAACAAA
AGAAATAATGGATGTCTTCACTTCACCCAATCACATCAAGTGTTCTTGGA
ATCTTGAAATCTTAATATTCTAGCTCTTAACTCTCAGACTCAGGACTCAG
ACTCAGCAGAGCTGACTTTCGGTTAAGAGCGGGCCTGAAATGTATAGAAT
GATTCCCAGAGGAAATGGGATGGTGGGAAACACACACACATTTTGTGACA
GTAGTACTCACAGAGACGAAACGTAACCCCTCAGTCACATGATGATCTTT
CACAACAAGAAAGGATTTTCATATTTTCGCATGATATGATAGATATGAAT
TGTCCACTGGTCTCTGATGAGCCTGATAACTTCACCTACAATAATACGTG
ATACGCTGTGAGTATGCTGCAGAAGAGAACACGCAAAAACACATTTCTTG
CCGAATTCTTCGGCTATCGACCCCAAATAAAGTACTGTCCACGCGCCTGA
GTCAGGCCGACGTGGGGCACTATAGTGTACTGCTAGAGGCACGGTAGCTA
CCGCACCGGGTCTTGGGAATCGCCACAGCATACAGCATGCGTTACACGAC
CGTCTTGTCCTCCGACGTGCTGGTCGTTCCTCCTCCATTTTTTTTATTCT
TTTTGTTCCTCCGCCCTTTTGAATTTTTAAGAGTGAAAAACAAGGACGCA
GCTGCGGCACATCGGACACAAGCCGCTTTTATTTTTTATTTTTTTCGAGC
TTTGTAAAATCTAAATCTAAATCTCAATTCAGTGCTCGACTACGAGTTTA
CCGGTACCTACGGGTATAAATGCGGACATTTTCTGTTTTTCTGTTACGAT
CGACCCCGACCCTTACCGCTCTAAACGTACAATGGCATGCTTCGGGTACA
ACGGCACAGCTACAAAGCAGGGAGTAGTTGGCCTTTTCCAACCAACACTA
GCCAACTGAAACCAACTCGTAAAAGTAAGAATTAACGAAATAACTATTAA
TAGGCTTCTTTGTACAGCACCAGTTCGTAGGTGGAATTGTTTTCGTTGTG
GGGTGTGTGTTTTGTCACCCTTGATTTGGACGCCACTCTACTCCTTTCGG
GTAGGTGTACAGTAGAGACCTACACAATAAAGAGAAAATTCTGTACGTGG
TAATCGTCGATGCGTCGACACACAAAGCGACGCGAAACAAGACGATCCGA
GGCCCTCAAGGAAGGCCATCCTCAGCGTGTGTGCTGCTGCTCTCAGCGCA
CTTGACATGCGACGCGAGGCACAAATAGAGCACAGTACGGAAATAGGGCC
AGAGCGCCCCACAACGGAATGATCGGCACACAGAGAATACGACGAGCGGT
GCCAGGGCGATGATTTCGGCTGGGCGAGGGTGACACATCCATCTACCGGT
ACTGCTGTACCTGTTATGGATCGTATCATAGGATAGGGAGATCGACGTAT
CATATTGTACGACAAGGGTCTCTTCGGAAGACGACGACGATCAGCGGAAG
CGGTGACAAACCGGTAGGTCGTATTATACGCCCGCATGAACGCCAATACA
ACAACAAAAAACAAAACAACTCCAGACGCAACGAACAACACCACAACCCC
CGCCATCATCCATTCGCCCCCCACAACCGCGTCCGCCATCACCAGGAGCA
GGAGCAGGAGCTGGAGCGACTGCAGATGCAGATGCAGGAGCACGCGAACA
CGCACATGCTTTCGGCGGACGTTTCTCTTCCTCCTCCTCTTCCTCTCCCT
CCTCCGCTGCCTCGGGGTGGTCCTCGTCCAACACAACGTTTGGGTCGCCG
CCGGGGGTATCCACGGCGGCGGCGGCGGCGGCAATAGCTGCGGTCTCGAG
AGCCCCCCCCTTCTCTCGGACGGCCGCAAACACCGGCACGGGCACGGGGC
GCAGAATCAGCGGTTCTGGTGGCGGTTCTGGAGGCGGTGGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:91496..98239-

>mRNA_P-littoralis_Contig195.21.1 ID=mRNA_P-littoralis_Contig195.21.1|Name=mRNA_P-littoralis_Contig195.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig195:91496..98239- (Pylaiella littoralis U1_48)
ATGTCTGAGGTTGGCAAAGAGAAAGACGACGGGAAGCGGGAGGAGGGAGA
TGGACAGCAGCAGCAAGGCAAAGCTCCTTCTGCTGTCGATTCTTCTGCTG
GTGCTGGTGCTGGTACTGGTGCGGATGGTGGTGCTGGTGCTGGTGCTGAT
GCTGCAACAGCCGCAGCAACGGCAGCGACGCTGCACGAGCCTAAACATCG
CATTATCCGCACGCCTCAGTCGCCGGCGCCTAAGCGAGCCACGAGGGCAT
CGACAGGTGCCCCAATCGCCCTGACCGCGAAGGGGTCCCTCTACAAGGCA
AACAAGGACACGGGAGCAGGAGCAGGAGCTGGAGCGACTGCAGATGCAGA
TGCAGGAGCACGCGAACACGCACATGCTTTCGGCGGACGTTTCTCTTCCT
CCTCCTCTTCCTCTCCCTCCTCCGCTGCCTCGGGGTGGTCCTCGTCCAAC
ACAACGTTTGGGTCGCCGCCGGGGGTATCCACGGCGGCGGCGGCGGCGGC
AATAGCTGCGGTCTCGAGAGCCCCCCCCTTCTCTCGGACGGCCGCAAACA
CCGGCACGGGCACGGGGCGCAGAATCAGCGGTTCTGGTGGCGGTTCTGGA
GGCGGTGGTGGG
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