mRNA_P-littoralis_Contig194.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.82.1
Unique NamemRNA_P-littoralis_Contig194.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig194.82.1 vs. uniprot
Match: A0A6H5JIZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ9_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.170e-29
Identity = 63/107 (58.88%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:   28 LLPAYGENVRRRRVLLRAVQKVACCCHAAGVRTAPTLAKTLKFFDFGSAEDGRYKAGRMRTVDVWHWLRLLTAPTDP--SSFKGKRSTDGGKQQAEGAKGRRRGADL 342
            LLPAYG N++RRRVLL+AV+KVA CC  AGVRTAP L  TL  FDFG  ++ R KAGRMR VD+WHWLRLL+APTD    SF G    D   +  +G  G+RR  D+
Sbjct: 1080 LLPAYGPNIQRRRVLLKAVRKVANCCQTAGVRTAPALLATLAHFDFGPVDEARRKAGRMRAVDLWHWLRLLSAPTDDPGGSFMGGSFNDNANR-TKGVHGQRRKKDV 1185
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BLAST of mRNA_P-littoralis_Contig194.82.1 vs. uniprot
Match: D8LRB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB6_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 8.420e-28
Identity = 62/107 (57.94%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:   28 LLPAYGENVRRRRVLLRAVQKVACCCHAAGVRTAPTLAKTLKFFDFGSAEDGRYKAGRMRTVDVWHWLRLLTAPTDPS--SFKGKRSTDGGKQQAEGAKGRRRGADL 342
            LLPA+G NV+RRRVLLRAV+KVA CC  AGVRTAP L  TL +FDFG  ++ R KAGRMR VD+WHWLRLL+AP + S  S  G  S +    + +G  G+RR  D+
Sbjct:  931 LLPAHGPNVQRRRVLLRAVRKVAHCCQTAGVRTAPALLATLAYFDFGPVDEARRKAGRMRAVDLWHWLRLLSAPAEDSGGSVVGG-SCNNNANRTKGVHGQRRKKDV 1036
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIZ9_9PHAE5.170e-2958.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB6_ECTSI8.420e-2857.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:217267..217617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size353
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789934.1286273-CDS-P-littoralis_Contig194:217266..2176171680789934.1286273-CDS-P-littoralis_Contig194:217266..217617Pylaiella littoralis U1_48CDSP-littoralis_Contig194 217267..217617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.82.1prot_P-littoralis_Contig194.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 217267..217617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.82.1

>prot_P-littoralis_Contig194.82.1 ID=prot_P-littoralis_Contig194.82.1|Name=mRNA_P-littoralis_Contig194.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
GKGGGKRKLLLPAYGENVRRRRVLLRAVQKVACCCHAAGVRTAPTLAKTL
KFFDFGSAEDGRYKAGRMRTVDVWHWLRLLTAPTDPSSFKGKRSTDGGKQ
QAEGAKGRRRGADLGDC
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mRNA from alignment at P-littoralis_Contig194:217267..217617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.82.1 ID=mRNA_P-littoralis_Contig194.82.1|Name=mRNA_P-littoralis_Contig194.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig194:217267..217617+ (Pylaiella littoralis U1_48)
GGGAAAGGCGGCGGGAAGAGGAAGCTTCTGCTGCCGGCGTACGGCGAGAA
CGTTCGCCGGCGGCGAGTCCTCCTGAGAGCGGTCCAGAAGGTCGCGTGCT
GCTGCCACGCGGCGGGCGTGAGGACCGCGCCGACGCTGGCAAAGACTCTG
AAGTTCTTCGATTTCGGTTCGGCGGAAGACGGGAGGTACAAAGCGGGTCG
CATGCGCACGGTCGACGTGTGGCACTGGCTCCGACTGCTGACCGCGCCGA
CAGATCCAAGCAGCTTCAAAGGTAAACGGAGCACCGACGGGGGGAAGCAA
CAAGCAGAAGGTGCGAAAGGTCGCCGTAGAGGTGCCGACCTTGGGGACTG
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:217267..217617+

>mRNA_P-littoralis_Contig194.82.1 ID=mRNA_P-littoralis_Contig194.82.1|Name=mRNA_P-littoralis_Contig194.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig194:217267..217617+ (Pylaiella littoralis U1_48)
GGGAAAGGCGGCGGGAAGAGGAAGCTTCTGCTGCCGGCGTACGGCGAGAA
CGTTCGCCGGCGGCGAGTCCTCCTGAGAGCGGTCCAGAAGGTCGCGTGCT
GCTGCCACGCGGCGGGCGTGAGGACCGCGCCGACGCTGGCAAAGACTCTG
AAGTTCTTCGATTTCGGTTCGGCGGAAGACGGGAGGTACAAAGCGGGTCG
CATGCGCACGGTCGACGTGTGGCACTGGCTCCGACTGCTGACCGCGCCGA
CAGATCCAAGCAGCTTCAAAGGTAAACGGAGCACCGACGGGGGGAAGCAA
CAAGCAGAAGGTGCGAAAGGTCGCCGTAGAGGTGCCGACCTTGGGGACTG
C
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