mRNA_P-littoralis_Contig194.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.61.1
Unique NamemRNA_P-littoralis_Contig194.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: A0A6H5KTI0_9PHAE (UMP-CMP kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI0_9PHAE)

HSP 1 Score: 358 bits (918), Expect = 1.710e-118
Identity = 190/233 (81.55%), Postives = 204/233 (87.55%), Query Frame = 3 
Query:   21 RKGTVLFTALVTGVVGIAALLAIRRRQQKKG-----GAPSDSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERNSKSELAGMINEFIQEGKIVPAEVTVGLLRKAMKASGKSRFLIDGFPRSPDNLAAWEASAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRYISSI 704
            +KG VL   +V+GVVGIAALLA+R RQQKK      G    +T  VVFVLGGPGSGKGTQC LIA E+ALGYAHLSAGDLLRAERNS SELAGMINEFI+EGKIVPAEVTVGLLRKAM+ SGKSRFLIDGFPR+PDNLAAWEAS AG AVV D ALFLDCPEE+MT RI+ERG SSGRIDDNEEAIRKRL TY ESTMPIIKEFEARGKLREVNSDQTIEEVA+EVRR+IS+I
Sbjct:    7 QKGAVLSAIIVSGVVGIAALLALRNRQQKKSRGARNGGAVGATPHVVFVLGGPGSGKGTQCALIAEEEALGYAHLSAGDLLRAERNSGSELAGMINEFIREGKIVPAEVTVGLLRKAMEKSGKSRFLIDGFPRNPDNLAAWEASTAGGAVVVDFALFLDCPEEIMTERIMERGRSSGRIDDNEEAIRKRLMTYRESTMPIIKEFEARGKLREVNSDQTIEEVAIEVRRHISAI 239
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: D8LRC1_ECTSI (UMP-CMP kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC1_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 7.130e-108
Identity = 176/215 (81.86%), Postives = 187/215 (86.98%), Query Frame = 3 
Query:   75 ALLAIRRRQQKKG-----GAPSDSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERNSKSELAGMINEFIQEGKIVPAEVTVGLLRKAMKASGKSRFLIDGFPRSPDNLAAWEASAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRYISSI 704
            A  ++R  QQKK      G    +T  VVFVLGGPGSGKGTQC LIA E+ALGYAHLSAGDLLRAERNS SELAGMINEFI+EGKIVPAEVTVGLLRKAM+ SGKSRFLIDGFPR+PDNLAAWEAS AG AVV D ALFLDCPEE+MT RI+ERG SSGRIDDNEEAIRKRL TY ESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRR+IS+I
Sbjct:   29 AWFSLRFSQQKKSRGVSNGGSVGATPHVVFVLGGPGSGKGTQCALIAEEEALGYAHLSAGDLLRAERNSGSELAGMINEFIREGKIVPAEVTVGLLRKAMEKSGKSRFLIDGFPRNPDNLAAWEASTAGGAVVVDFALFLDCPEEIMTERIMERGRSSGRIDDNEEAIRKRLVTYRESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRHISAI 243
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: A0A7S3H2J5_9STRA (UMP-CMP kinase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2J5_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.510e-66
Identity = 126/224 (56.25%), Postives = 153/224 (68.30%), Query Frame = 3 
Query:   30 TVLFTALVTGVVGIAALLAIRRRQQKKGGAPSDSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERNSKSELAGMINEFIQEGKIVPAEVTVGLLRKAMKASGKSRFLIDGFPRSPDNLAAWEASAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRYISS 701
            T++ TA+  G  G+A   A            +D   ++VFVLGGPGSGKGT C  I      GY HLSAGDLLRAER S SELA MIN +I+EGKIVPAEVTV LLR A+++SG  +FL+DGFPR   NL  W+A+ +  A V    LFLDCP EVMTAR+LERG +SGR DDNEE++RKRL TY +ST PII  F A GK+REVNS++  EEV  EV  + S+
Sbjct:    8 TIVATAVAIGA-GLALTYATYNYFSSTASGKNDKY-KIVFVLGGPGSGKGTNCTRIVER--FGYVHLSAGDLLRAERESGSELADMINTYIKEGKIVPAEVTVRLLRNAIESSGNHKFLVDGFPRDLQNLECWKANMSAIADV-QFLLFLDCPHEVMTARLLERGKTSGRADDNEESVRKRLLTYEQSTRPIIDSFRAEGKVREVNSNRPFEEVFAEVSLHFSA 226
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: A0A7J7K2I1_BUGNE (UMP-CMP kinase n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7K2I1_BUGNE)

HSP 1 Score: 199 bits (507), Expect = 1.500e-57
Identity = 110/202 (54.46%), Postives = 135/202 (66.83%), Query Frame = 3 
Query:   96 RQQKKGGAPSDSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERNSKSELAGMINEFIQEGKIVPAEVTVGLLRKAMKASGKSRFLIDGFPRSPDNLAAWEASAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRYISS 701
            R+   GG    S   VVFVLGGPG+GKGTQC  I  E   GY HLSAGDLLRAER    +LA MI   I  G IVP EVT  LL KAM+ SGK  FLIDGFPR+ +NL  W+  A  D       LF DCPEE    R LERGL+SGR DDNEE++RKR+ TY +STMPIIK +E++G +R++ +++ I+EV  +V++  SS
Sbjct:    3 RRAISGGKFIMSKFNVVFVLGGPGAGKGTQCEKIVKE--FGYVHLSAGDLLRAERAKGGKLADMIEHHITNGSIVPVEVTCSLLDKAMEDSGKQDFLIDGFPRNENNLQGWQ-KAMDDKTTVKFVLFFDCPEEDCVQRCLERGLTSGRTDDNEESMRKRIVTYTQSTMPIIKYYESQGLVRQIKANRPIDEVFEQVKQAFSS 201
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: B8BVT3_THAPS (UMP-CMP kinase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVT3_THAPS)

HSP 1 Score: 199 bits (505), Expect = 1.140e-56
Identity = 109/197 (55.33%), Postives = 145/197 (73.60%), Query Frame = 3 
Query:  123 SDSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERNSK-SELAGMINEFIQEGKIVPAEVTVGLLRKAM----KASGKSRFLIDGFPRSPDNLAAWEASAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRYIS 698
            SD   RVVFVLGGPG+GKGTQC L++    L +AHLSAGDLLRAER  + SELA +IN  I  GKIVP+E+TV L++ AM    K SG+++FLIDGFPRS  N+ AW+    G A V +L LF +CPE+V+T+R+LERG +SGR DD+ + IRKR ATY E +MPII+ +E  GK+R++ +D++IE+V  EV   ++
Sbjct:   50 SDEPFRVVFVLGGPGAGKGTQCQLLSDN--LHWAHLSAGDLLRAERQKEGSELADIINSNISAGKIVPSEITVQLIKNAMVDLRKTSGQTKFLIDGFPRSEGNVNAWKEVVGGAADV-ELVLFFECPEDVLTSRLLERGKTSGRSDDSIDVIRKRFATYREESMPIIEMYEKEGKVRQIVADRSIEDVYKEVEAILN 243
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: A0A7S2HN02_9STRA (UMP-CMP kinase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HN02_9STRA)

HSP 1 Score: 198 bits (504), Expect = 2.230e-56
Identity = 108/203 (53.20%), Postives = 148/203 (72.91%), Query Frame = 3 
Query:  117 APSDSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERN-SKSELAGMINEFIQEGKIVPAEVTVGLLRKAMKA----SGKSRFLIDGFPRSPDNLAAWEA--SAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRYISSI 704
            A + S  +VVFVLGGPG+GKGTQC L++  K LG+AHLSAGDLLRAER  + SELA +IN  I  G+IVPA +TV LLR+AM++    SG ++FLIDGFPRS  N+  W+   +  G A+V +  LFLDCPE+VMT+R+LERG +SGR+DDN + IRKR  T+   +MPI+  +E +GK+R+V +D+T+E++  EV    + +
Sbjct:   56 AATTSPFKVVFVLGGPGAGKGTQCELLS--KNLGWAHLSAGDLLRAERKKTDSELADLINSKIAAGQIVPASITVRLLREAMESIKSKSGNTKFLIDGFPRSDGNVTVWDEVMTDTGLAIV-EFVLFLDCPEDVMTSRLLERGQTSGRVDDNLDVIRKRFETFRNESMPIVGRYEKKGKVRKVQADRTVEDIYNEVEALFAGL 255
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: R1DM52_EMIHU (UMP-CMP kinase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DM52_EMIHU)

HSP 1 Score: 198 bits (503), Expect = 8.870e-56
Identity = 104/205 (50.73%), Postives = 137/205 (66.83%), Query Frame = 3 
Query:  120 PSDSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERNSKSELAGMINEFIQEGKIVPAEVTVGLLRKAMKASGKSRFLIDGFPRSPDNLAAWEASAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRYISSIM*NWQVDESA 734
            P+D    VVFVLGGPG+GKGTQC  I  +   GY HLSAGDLLRAER S S    MI+E+I+EGKIVP EVTV LL  A++A G  RFL+DGFPR+ +NL+ W+  A G A+     L  DCPEEVM  R+LERG +SGR DDN  +IRKR AT+ + T P++K +E +G +  ++  + ++EV  +   +I S+   W+  E A
Sbjct:   89 PADEAPAVVFVLGGPGAGKGTQCARIVEKH--GYVHLSAGDLLRAERTSGSAQGQMIDEYIREGKIVPVEVTVKLLLDAIRADGGRRFLVDGFPRNTNNLSGWQGQA-GSAMRVAAVLVFDCPEEVMEERLLERGKTSGRSDDNAASIRKRFATFRDETTPVLKYYEHQGLVTTIDGTRPVDEVWADTTAFIDSLEAGWRRREEA 290
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: A0A6U4G9K0_9STRA (UMP-CMP kinase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G9K0_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.770e-55
Identity = 104/183 (56.83%), Postives = 128/183 (69.95%), Query Frame = 3 
Query:  126 DSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERNSKSELAGMINEFIQEGKIVPAEVTVGLLRKAMKASGKSRFLIDGFPRSPDNLAAWEASAAGDAVVFDLALFLDCPEEVMTARILERGLS-SGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEV 671
            +S    +FVLGGPGSGKGTQC L+  ++  GY H+SAGDLLRAER     +  +I ++I+EGKIVP+ +TV LLR AM +SGK RFLIDGFPRS +NL AW+    G  +     LFLDCPEE M  R+L RG   SGR DDNE A+RKRL TY +STMPII  F  +GK  +VN +Q +EEV
Sbjct:   79 ESGIECIFVLGGPGSGKGTQCALL--QERFGYVHISAGDLLRAERRKGGPVGTLIEDYIKEGKIVPSSITVQLLRNAMVSSGKQRFLIDGFPRSEENLHAWQEELDG-VIDVKYLLFLDCPEETMVERVLSRGAQGSGRSDDNEVAVRKRLQTYADSTMPIINYFSKQGKTLKVNGNQPVEEV 258
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: A0A7S0MPR2_9CRYP (UMP-CMP kinase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MPR2_9CRYP)

HSP 1 Score: 193 bits (491), Expect = 2.720e-55
Identity = 102/189 (53.97%), Postives = 130/189 (68.78%), Query Frame = 3 
Query:  123 SDSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERNSKSELAGMINEFIQEGKIVPAEVTVGLLRKAMKASGKSRFLIDGFPRSPDNLAAWEASAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRR 689
            SD+  RVVFVLGGPG+GKGTQC  I   +  G+ HLSAGDLLR ER S S  A +IN +I+EGKIVP E+TV LL+ AM+ S   +FL+DGFPRS DN   WE    GD+   D  LF +CPE+ +  R+L RG SSGR DDN E+IRKR  T+ + TMP+ + FEA G+LR ++S Q +E V  E ++
Sbjct:    6 SDAKPRVVFVLGGPGAGKGTQCAKIV--ETFGWCHLSAGDLLREERKSGSADADLINTYIKEGKIVPVEITVKLLKNAMQKSEIKKFLVDGFPRSVDNYEGWER-VVGDSADVDFCLFYECPEDELEKRLLHRGQSSGRDDDNIESIRKRFKTFVDETMPVTRIFEASGRLRHISSAQPVEAVWEETKK 191
[Close]
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Match: A0A7S2C1B9_9STRA (UMP-CMP kinase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1B9_9STRA)

HSP 1 Score: 194 bits (494), Expect = 4.280e-55
Identity = 116/220 (52.73%), Postives = 139/220 (63.18%), Query Frame = 3 
Query:   45 ALVTGVVGIAALLAIRRRQQKKGGAPSDSTSRVVFVLGGPGSGKGTQCGLIAAEKALGYAHLSAGDLLRAERNSKSELAGMINEFIQEGKIVPAEVTVGLLRKAMKASGKSRFLIDGFPRSPDNLAAWEASAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATYHESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRYISSI 704
            A V G+VG   ++      Q++     D   +VVFVLGGPGSGKGT C  I  E   G+ HLSAGDLLRAER S SEL  MI   IQ G IVPAEVTV LL +AMK S  + FL+DGFPR+ DNL  W        V F   L L+CPEEVM  R+L+RG +SGR DDN E+IRKR  TY ESTMP+++ F    K+REV SD+  EEV  +VR  I  +
Sbjct:   15 ASVFGLVGGRVMMRRINNLQEE----LDDRPKVVFVLGGPGSGKGTMCARIVEE--FGFMHLSAGDLLRAERKSGSELGDMIEGHIQAGSIVPAEVTVRLLDEAMKKSEATCFLVDGFPRNADNLECWVKLMTHCKVEF--VLMLECPEEVMEQRLLKRGETSGRSDDNIESIRKRFKTYKESTMPVVQVFAKENKVREVVSDRAPEEVYADVRTAICEV 226
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI0_9PHAE1.710e-11881.55UMP-CMP kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D8LRC1_ECTSI7.130e-10881.86UMP-CMP kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S3H2J5_9STRA2.510e-6656.25UMP-CMP kinase n=1 Tax=Spumella elongata TaxID=890... [more]
A0A7J7K2I1_BUGNE1.500e-5754.46UMP-CMP kinase n=1 Tax=Bugula neritina TaxID=10212... [more]
B8BVT3_THAPS1.140e-5655.33UMP-CMP kinase n=1 Tax=Thalassiosira pseudonana Ta... [more]
A0A7S2HN02_9STRA2.230e-5653.20UMP-CMP kinase n=1 Tax=Helicotheca tamesis TaxID=3... [more]
R1DM52_EMIHU8.870e-5650.73UMP-CMP kinase n=1 Tax=Emiliania huxleyi TaxID=290... [more]
A0A6U4G9K0_9STRA1.770e-5556.83UMP-CMP kinase n=1 Tax=Phaeomonas parva TaxID=1244... [more]
A0A7S0MPR2_9CRYP2.720e-5553.97UMP-CMP kinase n=1 Tax=Cryptomonas curvata TaxID=2... [more]
A0A7S2C1B9_9STRA4.280e-5552.73UMP-CMP kinase n=1 Tax=Florenciella parvula TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:168435..174996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRC1
Preferred nameCMPK1
PFAMsADK
Model size1602
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K13800
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00052
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004127,GO:0004550,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006165,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006225,GO:0006227,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009185,GO:0009186,GO:0009188,GO:0009189,GO:0009193,GO:0009194,GO:0009196,GO:0009197,GO:0009218,GO:0009219,GO:0009220,GO:0009221,GO:0009259,GO:0009260,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0018963,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0019752,GO:0019856,GO:0022414,GO:0022602,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033862,GO:0034404,GO:0034641,GO:0034654,GO:0036430,GO:0042455,GO:0042537,GO:0042698,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046048,GO:0046049,GO:0046062,GO:0046077,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046385,GO:0046390,GO:0046483,GO:0046704,GO:0046705,GO:0046939,GO:0046940,GO:0048511,GO:0048609,GO:0050145,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Exons4
Evalue6.02e-80
EggNOG OGsCOG0563@1|root,KOG3079@2759|Eukaryota
EC2.7.4.14
Descriptioncytidylate kinase activity
Cds size426
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.61.1prot_P-littoralis_Contig194.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 169327..174712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789933.4815204-UTR-P-littoralis_Contig194:168434..1693261680789933.4815204-UTR-P-littoralis_Contig194:168434..169326Pylaiella littoralis U1_48UTRP-littoralis_Contig194 168435..169326 -
1680789933.542916-UTR-P-littoralis_Contig194:174712..1749961680789933.542916-UTR-P-littoralis_Contig194:174712..174996Pylaiella littoralis U1_48UTRP-littoralis_Contig194 174713..174996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789933.495841-CDS-P-littoralis_Contig194:169326..1693731680789933.495841-CDS-P-littoralis_Contig194:169326..169373Pylaiella littoralis U1_48CDSP-littoralis_Contig194 169327..169373 -
1680789933.5101748-CDS-P-littoralis_Contig194:170503..1706721680789933.5101748-CDS-P-littoralis_Contig194:170503..170672Pylaiella littoralis U1_48CDSP-littoralis_Contig194 170504..170672 -
1680789933.5216124-CDS-P-littoralis_Contig194:171872..1720621680789933.5216124-CDS-P-littoralis_Contig194:171872..172062Pylaiella littoralis U1_48CDSP-littoralis_Contig194 171873..172062 -
1680789933.5326605-CDS-P-littoralis_Contig194:174692..1747121680789933.5326605-CDS-P-littoralis_Contig194:174692..174712Pylaiella littoralis U1_48CDSP-littoralis_Contig194 174693..174712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.61.1

>prot_P-littoralis_Contig194.61.1 ID=prot_P-littoralis_Contig194.61.1|Name=mRNA_P-littoralis_Contig194.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
MINEFIQEGKIVPAEVTVGLLRKAMKASGKSRFLIDGFPRSPDNLAAWEA
SAAGDAVVFDLALFLDCPEEVMTARILERGLSSGRIDDNEEAIRKRLATY
HESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRYISSIM*
back to top

mRNA from alignment at P-littoralis_Contig194:168435..174996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.61.1 ID=mRNA_P-littoralis_Contig194.61.1|Name=mRNA_P-littoralis_Contig194.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6562bp|location=Sequence derived from alignment at P-littoralis_Contig194:168435..174996- (Pylaiella littoralis U1_48)
TGCCAACGCTCAGAGAGACCCGCAAGGGCACAGTGCTTTTCACCGCGCTT
GTGACTGGTGTTGTGGGAATCGCCGCGCTTCTAGCGATCCGGCGCCGGCA
GCAGAAGAAAGGCGGGGCACCATCCGATTCGACGTCGCGCGTTGTGTTTG
TTCTAGGAGGGCCTGGGTCCGGGAAAGGCACCCAGTGCGGGCTCATAGCC
GCCGAAAAGGCCCTCGGTTACGCTCACTTATCCGCCGGAGACCTGCTGAG
GGCGGAGAGAAACTCTAAGTCGGAGCTCGCGGGCATGATCAACGAGTTCA
TCCAGTGAGAAGAAAGAGTTGCCCATCATGTAATATAACACAGCAGCACG
TAATCGGTCGGTTTGGATGTTTGACTTGTTCTGTCTTATAATCTACGGCG
GTATCGGAGATGATGGCATACTGCTGTAATTCAGTTGATTGCGTTCCGCA
CACCAGCTGCTATGATACTCTGTACTGGTCAAGCTACATGATCCCGACGT
CGTCTTCTGCTCGGTTGTTATGCACCATCGTTAGAACAACAGCAGTGAAG
CTAGCAGTCTCGAGTCGCCCCAGGATGGCATATGCTGCTGTACCTGGTAC
TTATCTAGAGTACAGCAGTACCTTCATCTGCCTGGTGTGAGGCTGCAGGC
AGGTTCCATGATCGTTGTACAGCAGCGTGTACAGCAGCAGCAGCAGTAGT
GGTGTTCTTTGTGATGTTTCGAACTGTTTTTATTTTGCGCAGGCGCCAGC
GAGCGGTACACCGCCTGGTTTCCGCGCCACAAAGCCTTACCCCAAAATAC
ACCTTGGCATTTGAGCCCCGTTTGCGTCGGTGTTTGGCCAATTAACCCTT
TGAACCCCCCAACCCCGATTGGGGACAATTTGGGGACACCTGTTCTTTTT
TTTGTGACTTGGGTTTTGAAGACTCCTATCTACAGGTATTTTGGTTGTGG
TTCCGTGCGCTCGATGGAATGTGTGTGGATCTACCAATCGTTGGCTGCCT
CGGTGACACATTTAGGTTTTTATTATTATTATTCGAGAGCAAGCGCTCCC
GACCGTTATAGGTTTGTTGTGTGTTATTGTGTCTTCCCTCTACAGCGTAG
ACACAACTAACTGCGATCGTCTTGTATCACACAAACATAATACATTGTAC
ATATGTTAGACTATACAGCTGCGATGAAACGCTGATTGACGATGACGTTC
TGCTGCTGCACTTATAACACATACACCCTGATTTCTGGGACTGACTGCTG
CTGTGCATGCTGCAGCAGCTGATTGATGTGTCGTGCGATTGGTTGGTGAG
ACACACACCACGCGCACGCGGGCCGACACTATAAACAGACACATCGTGCC
ACGCACGTTTGAAAGCTCACAAACATACCTGATGATCTCCCACGAGTATC
ATTTATCCGACGATCTCGTACGAGTATCATCACATGGGTACCATCACATG
CCGACACCCTTTGGTTGATCATGCAACACATGATATACTTCGAAGTATGT
GTTTGTCATGGGACTGCTGTATCGTAGTGAAGTTGCTGCTGCTGATGATG
ATGATGATGCTGTAGACCCTGAGTGAATGTCGTGCGCGGGTATAACCTTG
CGGAGTGGAACCCTTCTGCTGTGTGGTTGTCGAGCGTGGTACCCTGATCT
GCCATGCTAAGTGGCGGTGTTGCTGCTTGCGTGCTATTTGCATACAGCAG
TATCCCTTTGTTTGAAGCAACATCCTGTAAAATAAAAACTAAACAAACAA
CTTTTGTGTAGGTGACCCCCCCCAAAAAGTTTGGTGTAGCTTTAGACTGG
AATCTGTCCCCATTTTTTTCAGGGCAAATTGGGGACAGATTTCTGTGTAT
AACCAAGTCACACCCTTTTTTCACCGGACAGAGCCAGCGAGACGTCAGTC
CTTTTTTTTTTGTTACTGTTCACCATTCTCCTATCATCGGCGCACCGGAA
TCAGTTAATTTTTTGCTCCATGATTATTTTTTTCAGACCCCTGGGGGGTC
AAAGGGTTAAGCCCTGTACGGCTTGCTGGCATCAGACTGCTGTGGCAGTG
TACCGTTCCGAGGGTTCCCAGATCGATTTGCACCGTTTTTTGGCATGGGT
TGTACCGATTTTTGGCGCGGGTTTGGCGGGGCCACATCACCCCCGGCGGA
GTAGTTCCGAGACCGTTCACGCCGAAAAGAAATTGGAAGAAATTTCGAGA
AGAGACGAGATATTTCACTCCACAACCTGCTTGCAAGGCTCCGCCCTTTC
GGCAAGTTGTATACAAGAGATGGAGCTACACATTGCATGCATTGCACGGC
TATCGTGCACAGATGCGCAAATGGCACGATTTTCTCGGGAAGTGCCTATT
ATGTCACCCATGGGTGAGAAAAAGCGAACCTCACCCAGACATCCATGCGG
TGGAATCCCCGGGAAAACATACTTACCCGCCCCCTTTCTGGAAACACAGG
AACAGAGAGAGACATAAAAAAGTATCGTGACCTGAACAAGAGGCAACGGG
TATATGTGAAGCTCAGCGCTAACGATTGGGGCTTTCACCCAGAGGCAGCA
GCAGCTAGAAAGAAAGGGAAACGGTAATCCAAGTCAGTTACGGCATCCAG
GGAACAAAGTTTCTTCTAGAAGTCAACCGGTCTATCGTATATAGCAGTTG
ACGATTTTGGCAGCGCTCATCCCTCAAAACTCCATCCGAATTTTTTGGGA
AAGACTTTCCATTCACCCATCCGTGTCCGTTGGGGTTTCCAGTTGTCCAT
CCCACGTTCGTTTGCCAAAAACAAATGGAAGATGCTTTGAAAACCTATTT
TCCATCCAAGCCCCCCCCCCCCCCGCTGACTCCAATACCAAAACAAACAC
ATCACCACCCAGCCCGAAAGTCTCATAAACTCAACCCAACCAAGCGGTGT
CGCTCGTGATCCCAAAACAAAAAAAATCCTCCAGGGAGGGCAAGATCGTG
CCGGCCGAGGTTACCGTCGGCCTTCTCCGCAAGGCTATGAAAGCTTCCGG
GAAGTCGCGCTTCCTCATCGACGGCTTCCCCCGTAGCCCCGACAACCTCG
CCGCGTGGGAGGCGTCGGCGGCGGGCGATGCCGTCGTCTTCGACTTGGCC
CTGTTTTTGGACTGCCCTGAGGAGGTAGGTGTTGCACTCGTAATATCATA
TCCGGCGTGAAGAAAGTTGTTTTTTGCGCGGAATGAGAATGCGAGGTAAT
AACCTGTACCTTCCATAGAACCGTGTCATGTACTGGTACAGCACAGTGGC
GTGTTGTTTTTATGGTACTGGGGTTGCAAGAGTGGTGCGGGGTTAGTAAA
AGGTATACGGGGTTCTAAGCTCGGCAAGGTAAGGAGGCTGGAAAGCTGTT
TGTGACGTAAAAAAATCGAATCCTTCGGTGCCGAGCGCAGGCTTGCCCGA
CCGTTTCGGCAAATTGGCCAAAACTTCGAAGCATGTTTTTGTGGTCGGTC
TCCTCGTCATCGGTTACAACTACAGCAGGTGACTTGGAGCGTAGTGTGCC
CGATCGAACTAGTTCGGGTCTTACCCGACTACAAAGCGACTCCCCGTTGA
TGGTCACTACTGTTGATTGGTTGACCTCCGGGAGTGTATTTCGCTGGTAT
GATGGACTGCGCGCTCGTGGATGACACTACGCCGTGTTTGGCTCGGAACT
GTTGTTGACGTGTGGCACGTTCAGCGGTCCCCTTTCCACAACCCGAAGAA
TATTCGATATGTCGGACGTAGTCGGTAGTCGTTGTCGGGCATGTCGCTGA
GAACGTCTACTTCTTGCAAGCTTCTCAACTGGCTTCAGTTCGATGGTGTA
TTTTCATTTTGCACCCCTCCCAACCAAAGACGAGCACCGCAATAGATAAG
TGGAGGAAACAAAAAAGAAATCCTGCTGTGACCTTCCTTCTGTGTGACCC
CGGCTGGTGCACCCACTTCATACCGAAAGGTGTAGACTGGTGCCCAGAAT
ATTAGGAACGAATACACACACACACACACACACACCTCTCGATACCCTTT
CTGACTGGTCCTTCTCGAAAAGGGGGCGCGTGATTGAACGGCCTGTTTTA
ACAACGAAGTCAAACCATCATGAAAACCCCCCCCTGCCGCCACCACCCTG
TCTCGAAAGCAAGGTTTGTGATCACTACTGTACAGCGAACAACGAACATT
CCAAAATTTGAGTATGCCCCCCCCCCCCTTTGTCTGGTATGTATTGCATA
CAGCATGCAAACGACCGTGCATGAGAACTATGAACGAGTAGCACCCCAAC
CCCGCCCCGCGTTCCCTCTCCCGCCAATGGGTGATGACATCCTTTGATGC
CCGTCATCGCTCTCGCTTGTGCAGGTGATGACGGCCCGCATCTTGGAGCG
CGGCCTGAGCAGCGGGCGTATCGACGACAACGAGGAGGCCATCCGAAAGC
GACTCGCGACCTACCACGAGTCTACGATGCCCATCATCAAAGAGTTTGAG
GCCCGGGGGAAGCTACGAGAGGTCAACTCCGATCAAACAATAGGTGTGTG
TGTGTTTTGTGTGAGAGATACCGGATACTTCTTTAAAAGGCCGATCGATT
CGGAAACGACACCCAGTATTAGTATTTTCGACCAGTAGATCGCCTTAGAG
TGTCCCGCATACGGTTACCGTAGTATCATATTCAAAAAATATATTTTCGG
ACCCCGGGGATGACATGATGTCGCCCCCGGGAGTAGTGTGTCCCCGAACC
GGCGTGGCACGATGGACTTCAGGGAAGGAGTGGCATATCATGTGCCCTTT
TAGAACATTTTTTGAACGTTATTTTATTGTTCTTCCGTTAAGGTTCTGGA
GTAGAGCCCGAAACCGGGGTCTTTGCTTAGACCCAATACAGCACCACCTA
CACCCTCCCCTCTGCCTGCTCTGGGTCGGCTAGCTGCTTTTTACGTAATG
AGTGCCGTGCTGGTAGGTTCGGCAAAAACGTCGATTGATGACGGTTCTCC
AAAATGCCTCGAGAACCACAAGAACACTGTTTCAAAACAATTCGATGGAA
AGGCTTCAAATCGGTGAATTTCCATATTTCAGGACAGCCAGCCTCTACTT
GCCGTATATAGGTGTAGGTGGTGCTGTTTTGGGGTTCATTGAAGACCCCG
GTATTGGGCTCTGCTCAAGAAACTCTAGAGAAAAAAAACGTTCTGAACGA
GTCCCAAAAGGCCACATGACATTCCACTACTCCTGTAGTCGACCTTATCT
GGTGGACCAGAGGAATGTTCGGTTTCCTGCGTTGTTTTGGCCTTTATTCC
GATAATGTGCGGGGCCAGAATCATGTGATGTGCCTTTTCGGCCAAACACG
GCGTGTGCGTGTCTGAGATGGGGAGCGCGCGTCATGGTGAAACATGTGTC
CATGGTTGTACGATAGCGGCCTCGAATCCGTTCGATCCTGCCACCACTTC
GTGGTAGAAAGCAAGAGGGACAGAGAGAGACAGAAAAGACAGACAGACAG
ATTGACAGGTGAAGATAGAGAGGGGAAGAGAGAGAGATCGAGAGAGAGCA
ATAGGAAAAGCGAGAGAGGCAGGGATCAAATAGAGTTATGCCTTTTACCA
AGCCATCTGAGCCGCGTTCTTCACCGTCCTTGTCGCGTTGCCCGCATCTT
GCTCCCGCCGTGCCGGAACACAGAGGAGGTCGCCGTCGAAGTACGGAGGT
ACATCTCATCAATTATGTAGAACTGGCAGGTAGATGAGTCAGCCCGCTTT
AAACCTCTCGGCCTGGCGTGTGCGGATTTGGTTCTCCGTGTAGGGGTGGA
GGCGTGTGTTTGTGTGTGTGTGTTTTGTGTGTATGTTTGTGTTTGTCGGT
AGTGCTGAGAGACAGCGTTCATCTTTGAGTTCACTACGCACATCACCCGC
CAAATTTTGTGGTCGTTGTTGTTGTCGTCGTCGTTGTAGTCGTTGTTGTT
GTTTTAAGGACGACGCTGACGAACATGATGCGCCCACCTTTATTGTTCTA
CGGTTGACATTTGGTTCGTAATTGGGGCGCCAACCCGGCACCAACCCGGA
TACATACCTCGTTATATCCGGAGAGCGCACTTGGCAAGTTAGCCGGGTTT
TTTGTCTGCCGCACCGCACTTGTCGGGGAAGCTGGTGTAGTGTAAGCACG
TAGCTGTACCAGTAGAAGTCAACGGCTCGTCACAAGCTGTTGAGATGGTT
TTCGCGCAGGGACCGCGGACTAGTCGACGATCCCGGTCACGCACGCGTGT
CGCTTGGCAAGGTCAGCGTGTCTAGGCTTAGGGGTGGTGAAGCGTTGTGT
AGCTGAAATTTTTGGGGAAACGTGTACAATTTTTTGGTATTGTTGTGGGG
GTGGGATTTCTACACCCGAAACGCACGCAGCAAGTACCGCATTTACAACA
ACCAGGATATCCGGAGCACAGCGTTGTGCCGTTTTTTTATGTTTCAAATT
CTCAGAGATGATGCGACTTCTCCTGCGAAGCAAGTTTGCCCGGTGCAAAT
CGTGTGGGGATGTAGGAATTCCATGATCCTAGCCGTTCCAGACGCGCGTG
TGCAACGGAATCATCGTGGTACGAATGGCGGTGAAACACGAAGGTGATCG
ACCACGCGGCCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig194:168435..174996-

>mRNA_P-littoralis_Contig194.61.1 ID=mRNA_P-littoralis_Contig194.61.1|Name=mRNA_P-littoralis_Contig194.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig194:168435..174996- (Pylaiella littoralis U1_48)
ATGATCAACGAGTTCATCCAGGAGGGCAAGATCGTGCCGGCCGAGGTTAC
CGTCGGCCTTCTCCGCAAGGCTATGAAAGCTTCCGGGAAGTCGCGCTTCC
TCATCGACGGCTTCCCCCGTAGCCCCGACAACCTCGCCGCGTGGGAGGCG
TCGGCGGCGGGCGATGCCGTCGTCTTCGACTTGGCCCTGTTTTTGGACTG
CCCTGAGGAGGTGATGACGGCCCGCATCTTGGAGCGCGGCCTGAGCAGCG
GGCGTATCGACGACAACGAGGAGGCCATCCGAAAGCGACTCGCGACCTAC
CACGAGTCTACGATGCCCATCATCAAAGAGTTTGAGGCCCGGGGGAAGCT
ACGAGAGGTCAACTCCGATCAAACAATAGAGGAGGTCGCCGTCGAAGTAC
GGAGGTACATCTCATCAATTATGTAG
back to top