mRNA_P-littoralis_Contig194.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.38.1
Unique NamemRNA_P-littoralis_Contig194.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig194.38.1 vs. uniprot
Match: D8LRC5_ECTSI (Cyclin_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC5_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 6.070e-118
Identity = 359/687 (52.26%), Postives = 390/687 (56.77%), Query Frame = 2 
Query:  572 MEPFDAERFVDRLVEE---SPWRRQV----NGTKWSPLASGXXXXXXXXX--AKLFLHLPPQXXXXXXQLQQPFPLGGPPG--CDAGHHXXXXXXXXXXXXXXMPMIIPHDPILDALFTPCRVM--------------PAAVTLGLVKVEQNFGYHGANGAGGGGAITNNKNGIMGFEPARVYNIPPPVE---AYTTSLQVPMAPLRQPSGGRFGVGIYPPGSSSNIQSAHEQSPTGLNT------TYLNTTAQNNSNNFPGNFSAXXXXXXXXXXXXXXXIVPLTGADSHSSLEYDDERHDFLRRQEVALYVGPEYLASASAFPGNGRLAAGTSAVTPAERAALVDWLSGLHATAPAASGGGGEPLSLDTLFLAVNLMDRFLSTAEGARTVQYTDGRGSGGGPRPALKLAGAGCLALSSKYHDTQAVSLWGVAAASLSTSRAAESLHVGGXXXXXXXXXXXXXXX----FFGVLGASGGX----LXXXXXXXXXXXXXXVSAARKELAAMEMRVASALTFRLTVPTALTFLGVYLRRAGALGYLQAGAPSSERVREEAQQILLCVMRDASSLEHPPSALAASALYWASCVTSPAAAPPASFAFSAVTGYELEQLCRCLRDMEGVRTGGGGVRHGSGSLSSPSGVGGGGGDF--------WAGAAFPEHAGKSLFGAGGGHPAIAAL 2482
            MEPFDAERFVDRLVE+   + W R       G  W      XXXXXXXXX  AKLF  +            QP+ +G   G        XXXXXXXXXXX   MPMI+PHDPILDA+FTPCR +              P AVT GLV+V       G  GAG        KN I  F P  +YNIPP      +Y  SLQVPMAPLRQPSGGR      PP     IQSA E+SP           TYLN   + NSNN P  FS  XXXXXXXXXXXXX   PLTGAD+HSS EYDDERH FLRRQE AL  G  Y+              G   V PA R+A VDWLS LH        GGG  L L                                    PA+KLAGA CL L+SKY D                           XXXXXXXXXXXXXXX    FFGVLGA         XXXXXXXXXXX   V AARKELAA EM+VASAL FRLTVPT+L+FLGV+LRRA  LGY+ A  P  ERVR EA+QILLC++R++ SLEHPPSALAASALYWASCVT+P AAPP SFAF AVTGYELEQLC CLRDME VRTGGG    G+GS +S S                 WAGAAFPEHA  SLFGAGGGHPAIAAL
Sbjct:    1 MEPFDAERFVDRLVEDPAPTAWGRGGLVGGGGRVWEXXXXXXXXXXXXXXXAAKLFQPV------FNFDEHQPYLVGDGGGYXXXXXXXXXXXXXXXXXXSQDMPMIVPHDPILDAIFTPCRAVLPSTHHYHHPAEAAPVAVTCGLVRVPSG----GRFGAG-------KKNEIAAFRPELLYNIPPXXXXEVSYAASLQVPMAPLRQPSGGRRLYSSSPPRGRVMIQSA-ERSPAAAAARLVAVATYLN--KEENSNNIPVEFSPSXXXXXXXXXXXXX-XXPLTGADAHSSREYDDERHAFLRRQEAALAAGARYIT-------------GGVVVDPAARSAAVDWLSRLHGAKTVWGDGGGGVLLLG-----------------------------------PAVKLAGAACLVLASKYQDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFFGVLGAGDSLGLXXXXXXXXXXXXXXNADVRAARKELAATEMQVASALGFRLTVPTSLSFLGVFLRRAEGLGYVLADGPGRERVRREAEQILLCMLRESCSLEHPPSALAASALYWASCVTTPGAAPPTSFAFLAVTGYELEQLCCCLRDMEAVRTGGGRRYDGAGSFASCSSPAAXXXXXXXXXXXXDWAGAAFPEHADNSLFGAGGGHPAIAAL 618
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRC5_ECTSI6.070e-11852.26Cyclin_C domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:126024..128961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog9361.ENSDNOP00000005063
Preferred nameCCNA1
PFAMsCyclin_C,Cyclin_N,Cyclin_N2
Model size2938
Max annot lvl33208|Metazoa
KEGG koko:K06627
KEGG Pathwayko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000278,GO:0000280,GO:0000307,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015630,GO:0016043,GO:0016579,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0048232,GO:0048285,GO:0048609,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051321,GO:0051704,GO:0060255,GO:0061695,GO:0061982,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0097123,GO:0140013,GO:1901564,GO:1902494,GO:1902554,GO:1902911,GO:1903046,GO:1903047,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Exons1
Evalue0.000382
EggNOG OGsCOG5024@1|root,KOG0654@2759|Eukaryota,38E7Y@33154|Opisthokonta,3BCMY@33208|Metazoa,3CXZH@33213|Bilateria,484RJ@7711|Chordata,49554@7742|Vertebrata,3J2AG@40674|Mammalia
Ec32 ortholog descriptionCyclin, C-terminal domain
Ec32 orthologEc-06_003040.1
DescriptionBelongs to the cyclin family
Cds size2229
COG categoryD
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789933.0450702-UTR-P-littoralis_Contig194:126023..1262791680789933.0450702-UTR-P-littoralis_Contig194:126023..126279Pylaiella littoralis U1_48UTRP-littoralis_Contig194 126024..126279 +
1680789933.067197-UTR-P-littoralis_Contig194:128508..1289611680789933.067197-UTR-P-littoralis_Contig194:128508..128961Pylaiella littoralis U1_48UTRP-littoralis_Contig194 128509..128961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789933.0565038-CDS-P-littoralis_Contig194:126279..1285081680789933.0565038-CDS-P-littoralis_Contig194:126279..128508Pylaiella littoralis U1_48CDSP-littoralis_Contig194 126280..128508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.38.1prot_P-littoralis_Contig194.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 126280..128508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.38.1

>prot_P-littoralis_Contig194.38.1 ID=prot_P-littoralis_Contig194.38.1|Name=mRNA_P-littoralis_Contig194.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=743bp
MMMQEQPPRFIAGPPGHQANNEETTVSTATWVPVSRGCSGHQGLVPPSTC
CVVDETAAAVFYEGGSASDGSAATTGGSDETMQSGGHPGRLRALVDSAIE
DSDEEMEPFDAERFVDRLVEESPWRRQVNGTKWSPLASGGGGGGGGGAAK
LFLHLPPQPPQQLQQLQQPFPLGGPPGCDAGHHHHHHHHQKQKQGQGMPM
IIPHDPILDALFTPCRVMPAAVTLGLVKVEQNFGYHGANGAGGGGAITNN
KNGIMGFEPARVYNIPPPVEAYTTSLQVPMAPLRQPSGGRFGVGIYPPGS
SSNIQSAHEQSPTGLNTTYLNTTAQNNSNNFPGNFSAAAVTTAAAAAATT
TTIVPLTGADSHSSLEYDDERHDFLRRQEVALYVGPEYLASASAFPGNGR
LAAGTSAVTPAERAALVDWLSGLHATAPAASGGGGEPLSLDTLFLAVNLM
DRFLSTAEGARTVQYTDGRGSGGGPRPALKLAGAGCLALSSKYHDTQAVS
LWGVAAASLSTSRAAESLHVGGGAGGGGGGGGGGGGGFFGVLGASGGGLG
LGDGSSNGNGDIDVSAARKELAAMEMRVASALTFRLTVPTALTFLGVYLR
RAGALGYLQAGAPSSERVREEAQQILLCVMRDASSLEHPPSALAASALYW
ASCVTSPAAAPPASFAFSAVTGYELEQLCRCLRDMEGVRTGGGGVRHGSG
SLSSPSGVGGGGGDFWAGAAFPEHAGKSLFGAGGGHPAIAAL*
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mRNA from alignment at P-littoralis_Contig194:126024..128961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.38.1 ID=mRNA_P-littoralis_Contig194.38.1|Name=mRNA_P-littoralis_Contig194.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2938bp|location=Sequence derived from alignment at P-littoralis_Contig194:126024..128961+ (Pylaiella littoralis U1_48)
CACCAAACACACAACTCATCTTCCCCCGCCTGTTTTTCCCGCCAACCCCA
ACCAAACGCCGGTGGGTCCCTCTTTCCCTTTAACTCAACCCAAGTCCCTC
TCACTGGGCTTGTCGGTCTCTCCCGCGCCATGTGCTGAGTCGAACAACCT
GGGGTGGGCCCCCATCGGCTCGGTTTCGCCGAACGAAGCCGGGCGTCGTG
TAACCATCACATCGGCGGGTTGAGGTGTTGTTAAAAAAGGTTCGGATATT
TTCAAGATGATGATGCAGGAGCAGCCACCTCGCTTCATCGCGGGCCCTCC
AGGCCACCAAGCCAACAACGAGGAGACGACCGTTTCTACGGCGACGTGGG
TGCCAGTATCGCGGGGCTGCAGCGGGCATCAGGGCCTGGTGCCGCCCTCG
ACCTGCTGCGTCGTAGATGAAACTGCAGCAGCAGTATTCTATGAGGGCGG
GAGTGCGTCCGACGGCTCTGCTGCTACGACTGGTGGCAGCGATGAGACGA
TGCAGTCTGGGGGACACCCAGGAAGACTCCGCGCACTCGTGGACAGCGCG
ATAGAAGACTCTGACGAGGAGATGGAGCCCTTCGACGCGGAGCGCTTCGT
CGACCGCCTCGTGGAGGAATCGCCGTGGCGGCGCCAAGTAAATGGTACTA
AATGGTCTCCGCTAGCGTCAGGAGGAGGAGGAGGAGGAGGAGGAGGTGCG
GCGAAACTGTTCCTGCATCTACCACCTCAGCCTCCCCAGCAACTGCAGCA
ACTGCAGCAACCTTTCCCGCTTGGCGGCCCTCCTGGGTGTGATGCTGGTC
ACCACCACCACCACCACCACCACCAGAAGCAGAAGCAGGGTCAAGGTATG
CCGATGATCATACCCCACGACCCCATTCTCGATGCGCTGTTCACGCCCTG
TCGAGTTATGCCAGCAGCGGTTACGTTAGGGCTGGTGAAGGTCGAGCAGA
ATTTCGGGTACCACGGGGCGAATGGTGCTGGTGGCGGCGGCGCCATCACG
AACAATAAAAACGGAATCATGGGGTTCGAGCCGGCGCGGGTGTACAATAT
CCCGCCGCCGGTGGAAGCGTACACGACTTCCCTTCAGGTACCGATGGCGC
CGCTCCGGCAGCCCTCGGGCGGCCGCTTCGGCGTCGGGATATACCCTCCC
GGCAGCTCAAGCAACATCCAGTCAGCACACGAACAATCTCCTACGGGGCT
CAACACCACGTACTTGAACACGACGGCGCAGAACAATTCGAATAATTTTC
CTGGGAATTTTTCTGCTGCTGCCGTGACCACCGCCGCCGCCGCCGCTGCC
ACCACCACCACGATTGTCCCACTGACCGGAGCGGACTCGCACTCCTCTCT
AGAGTATGACGATGAGCGCCATGATTTTCTTCGCAGGCAAGAGGTGGCGC
TGTACGTGGGGCCGGAGTACCTCGCGAGCGCCAGCGCTTTTCCTGGGAAT
GGGAGGTTGGCGGCGGGGACTTCTGCTGTTACGCCCGCCGAGCGAGCGGC
GCTGGTGGACTGGCTCTCGGGTTTGCACGCGACTGCACCTGCCGCTTCGG
GCGGCGGGGGCGAACCTCTGTCTCTCGACACGCTCTTCCTGGCTGTTAAT
CTGATGGACCGCTTCTTGTCGACGGCCGAGGGTGCGAGGACCGTTCAGTA
CACCGACGGCCGCGGTAGCGGCGGCGGGCCGCGACCGGCGCTCAAACTTG
CGGGAGCGGGGTGTCTGGCCCTGTCCTCCAAGTACCACGACACCCAGGCG
GTGTCTCTCTGGGGCGTGGCAGCGGCATCGTTGTCAACGTCCAGAGCTGC
GGAGTCGCTCCACGTTGGTGGAGGTGCCGGCGGCGGCGGCGGTGGTGGTG
GTGGCGGTGGCGGTGGCTTTTTTGGCGTCCTCGGCGCATCGGGAGGCGGT
CTCGGCCTGGGTGACGGCAGTAGCAACGGCAACGGCGACATCGACGTGAG
CGCGGCACGGAAGGAGCTGGCGGCGATGGAGATGCGGGTTGCCTCCGCTC
TGACGTTCCGCCTGACCGTGCCGACCGCACTGACGTTCCTCGGCGTGTAC
CTGCGGCGGGCGGGGGCCCTGGGGTACCTTCAAGCAGGCGCCCCCAGTTC
TGAGCGGGTGCGCGAGGAGGCTCAACAGATCCTGCTCTGCGTGATGCGGG
ACGCCTCCTCCCTGGAGCATCCCCCGTCCGCGCTCGCGGCGTCCGCGTTG
TACTGGGCTTCTTGCGTAACCTCTCCGGCGGCGGCCCCGCCGGCGTCGTT
TGCGTTTTCGGCAGTCACGGGATACGAGCTGGAGCAGCTCTGCCGCTGCC
TCAGGGACATGGAGGGCGTGAGGACGGGAGGCGGCGGAGTACGGCACGGG
TCGGGTTCGCTGTCTTCTCCAAGTGGGGTAGGCGGCGGCGGCGGCGATTT
TTGGGCTGGCGCGGCTTTCCCGGAACACGCCGGAAAGTCCCTGTTCGGTG
CCGGAGGTGGCCACCCGGCTATCGCGGCGCTGTAGTAGGACACGTGGCGG
GAAGAGGTGGGGAAGGGATATCGCGAACGGGTTATATGATTCGGTGGCAG
GGGACTTTGCGGCTGGACCAGCGAGATTGAGGGAAGGGGGGAGGAAGGGA
CGCGGGCGCTGAGCATGACGCCGACAAATTGACGGGCGATGCGGGGAAAT
AAAGCGGCTCGAGCCGGCGAGCGAGGAGCGCATGGACGGGCTGTCGGAAG
GGACAAAACGAATGCACGCAAACAGAGATCAGGGCGGGGAGCAACTGACA
GTGCAAGGAGTGTCGCCCGCCGCAGAAGGACGGGAACACGGACAAAATTG
GAGGCAGGAGTGCTGCATGGTGGTGTGTGGTAGCACGGATAGAGCGAAGG
AGCGAGGTGAAAGGGTGGGTGTTGGGTTTTGTGTGTGTGGGGTTGTGTAC
ATGATGAGAGAGGGCCGGGTGAGATCGGGACTGAAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:126024..128961+

>mRNA_P-littoralis_Contig194.38.1 ID=mRNA_P-littoralis_Contig194.38.1|Name=mRNA_P-littoralis_Contig194.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2229bp|location=Sequence derived from alignment at P-littoralis_Contig194:126024..128961+ (Pylaiella littoralis U1_48)
ATGATGATGCAGGAGCAGCCACCTCGCTTCATCGCGGGCCCTCCAGGCCA
CCAAGCCAACAACGAGGAGACGACCGTTTCTACGGCGACGTGGGTGCCAG
TATCGCGGGGCTGCAGCGGGCATCAGGGCCTGGTGCCGCCCTCGACCTGC
TGCGTCGTAGATGAAACTGCAGCAGCAGTATTCTATGAGGGCGGGAGTGC
GTCCGACGGCTCTGCTGCTACGACTGGTGGCAGCGATGAGACGATGCAGT
CTGGGGGACACCCAGGAAGACTCCGCGCACTCGTGGACAGCGCGATAGAA
GACTCTGACGAGGAGATGGAGCCCTTCGACGCGGAGCGCTTCGTCGACCG
CCTCGTGGAGGAATCGCCGTGGCGGCGCCAAGTAAATGGTACTAAATGGT
CTCCGCTAGCGTCAGGAGGAGGAGGAGGAGGAGGAGGAGGTGCGGCGAAA
CTGTTCCTGCATCTACCACCTCAGCCTCCCCAGCAACTGCAGCAACTGCA
GCAACCTTTCCCGCTTGGCGGCCCTCCTGGGTGTGATGCTGGTCACCACC
ACCACCACCACCACCACCAGAAGCAGAAGCAGGGTCAAGGTATGCCGATG
ATCATACCCCACGACCCCATTCTCGATGCGCTGTTCACGCCCTGTCGAGT
TATGCCAGCAGCGGTTACGTTAGGGCTGGTGAAGGTCGAGCAGAATTTCG
GGTACCACGGGGCGAATGGTGCTGGTGGCGGCGGCGCCATCACGAACAAT
AAAAACGGAATCATGGGGTTCGAGCCGGCGCGGGTGTACAATATCCCGCC
GCCGGTGGAAGCGTACACGACTTCCCTTCAGGTACCGATGGCGCCGCTCC
GGCAGCCCTCGGGCGGCCGCTTCGGCGTCGGGATATACCCTCCCGGCAGC
TCAAGCAACATCCAGTCAGCACACGAACAATCTCCTACGGGGCTCAACAC
CACGTACTTGAACACGACGGCGCAGAACAATTCGAATAATTTTCCTGGGA
ATTTTTCTGCTGCTGCCGTGACCACCGCCGCCGCCGCCGCTGCCACCACC
ACCACGATTGTCCCACTGACCGGAGCGGACTCGCACTCCTCTCTAGAGTA
TGACGATGAGCGCCATGATTTTCTTCGCAGGCAAGAGGTGGCGCTGTACG
TGGGGCCGGAGTACCTCGCGAGCGCCAGCGCTTTTCCTGGGAATGGGAGG
TTGGCGGCGGGGACTTCTGCTGTTACGCCCGCCGAGCGAGCGGCGCTGGT
GGACTGGCTCTCGGGTTTGCACGCGACTGCACCTGCCGCTTCGGGCGGCG
GGGGCGAACCTCTGTCTCTCGACACGCTCTTCCTGGCTGTTAATCTGATG
GACCGCTTCTTGTCGACGGCCGAGGGTGCGAGGACCGTTCAGTACACCGA
CGGCCGCGGTAGCGGCGGCGGGCCGCGACCGGCGCTCAAACTTGCGGGAG
CGGGGTGTCTGGCCCTGTCCTCCAAGTACCACGACACCCAGGCGGTGTCT
CTCTGGGGCGTGGCAGCGGCATCGTTGTCAACGTCCAGAGCTGCGGAGTC
GCTCCACGTTGGTGGAGGTGCCGGCGGCGGCGGCGGTGGTGGTGGTGGCG
GTGGCGGTGGCTTTTTTGGCGTCCTCGGCGCATCGGGAGGCGGTCTCGGC
CTGGGTGACGGCAGTAGCAACGGCAACGGCGACATCGACGTGAGCGCGGC
ACGGAAGGAGCTGGCGGCGATGGAGATGCGGGTTGCCTCCGCTCTGACGT
TCCGCCTGACCGTGCCGACCGCACTGACGTTCCTCGGCGTGTACCTGCGG
CGGGCGGGGGCCCTGGGGTACCTTCAAGCAGGCGCCCCCAGTTCTGAGCG
GGTGCGCGAGGAGGCTCAACAGATCCTGCTCTGCGTGATGCGGGACGCCT
CCTCCCTGGAGCATCCCCCGTCCGCGCTCGCGGCGTCCGCGTTGTACTGG
GCTTCTTGCGTAACCTCTCCGGCGGCGGCCCCGCCGGCGTCGTTTGCGTT
TTCGGCAGTCACGGGATACGAGCTGGAGCAGCTCTGCCGCTGCCTCAGGG
ACATGGAGGGCGTGAGGACGGGAGGCGGCGGAGTACGGCACGGGTCGGGT
TCGCTGTCTTCTCCAAGTGGGGTAGGCGGCGGCGGCGGCGATTTTTGGGC
TGGCGCGGCTTTCCCGGAACACGCCGGAAAGTCCCTGTTCGGTGCCGGAG
GTGGCCACCCGGCTATCGCGGCGCTGTAG
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