mRNA_P-littoralis_Contig194.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.31.1
Unique NamemRNA_P-littoralis_Contig194.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: D7FZ00_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ00_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.710e-34
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 MAQEGAAGEDGTAASSSGCSYVTLTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLMLG 228
            MA EG  GED +  +SSGCSYVTLTPGDATHFPGKGYTVSVHYVGKLE DHSVFDSS ARH PLQCKIGLGQL+ G
Sbjct:    1 MADEGQ-GEDDS--NSSGCSYVTLTPGDATHFPGKGYTVSVHYVGKLETDHSVFDSSHARHAPLQCKIGLGQLIRG 73
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: A0A8I2YRW9_9AGAM (Peptidylprolyl isomerase n=1 Tax=Boletus reticuloceps TaxID=495285 RepID=A0A8I2YRW9_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 4.600e-10
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   70 LTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLMLG 228
            LTPGD  HFP KG TV++HYVG L +D  VFDSS  R  P + +IG+G+++ G
Sbjct:    8 LTPGDGVHFPKKGDTVTIHYVGTL-SDGKVFDSSRDRGDPFKTQIGIGKVIKG 59
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: A0A2A9NCD4_9AGAR (Peptidylprolyl isomerase n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NCD4_9AGAR)

HSP 1 Score: 57.8 bits (138), Expect = 5.220e-9
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   52 GCSYVTLTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLMLG 228
            G +  T+T GD  HFP KG TV++HYVG L  D   FDSS  R+ P + KIG+G+++ G
Sbjct:    2 GVTVETITAGDGKHFPKKGDTVTIHYVGTL-LDGKKFDSSRDRNEPFKTKIGVGKVIRG 59
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: A0A409Y501_9AGAR (Peptidylprolyl isomerase n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409Y501_9AGAR)

HSP 1 Score: 57.0 bits (136), Expect = 1.540e-8
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   52 GCSYVTLTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLMLG 228
            G +  T+ PGD  HFP KG TV++HYVG L  D   FDSS  R  P Q +IG G+++ G
Sbjct:   20 GVTVETIIPGDGVHFPKKGGTVTIHYVGTL-TDGRKFDSSRDRGMPFQTEIGTGKVIKG 77
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: A0A371D1P8_9APHY (Peptidylprolyl isomerase n=2 Tax=Polyporus TaxID=5637 RepID=A0A371D1P8_9APHY)

HSP 1 Score: 55.8 bits (133), Expect = 2.950e-8
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   52 GCSYVTLTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLMLG 228
            G +  T+TPGD  HFP +G TV +HYVG L  D   FDSS  R  P   +IG+G+++ G
Sbjct:    2 GVTVETITPGDGVHFPQRGDTVQIHYVGTL-LDGKKFDSSRDRGEPFVTEIGVGKVIKG 59
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: A0A812SJB8_SYMMI (Peptidylprolyl isomerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SJB8_SYMMI)

HSP 1 Score: 55.5 bits (132), Expect = 5.630e-8
Identity = 29/54 (53.70%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   67 TLTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLMLG 228
            TL PGDA HFP KG +  VHY+G LE +  VFD S AR  P+   IGL Q++ G
Sbjct:    5 TLIPGDAVHFPVKGDSCLVHYIGMLE-NGEVFDDSYARDRPICVIIGLDQVIAG 57
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: X8JDB3_9AGAM (Peptidylprolyl isomerase n=4 Tax=Rhizoctonia solani TaxID=456999 RepID=X8JDB3_9AGAM)

HSP 1 Score: 55.1 bits (131), Expect = 5.910e-8
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   70 LTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLMLG 228
            L PGD  HFP KG TV++HYVG L  D S FDSS  R  P   +IG+G+++ G
Sbjct:    8 LKPGDGVHFPRKGDTVTIHYVGTL-LDGSKFDSSHDRGAPFITRIGVGKVIKG 59
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: A0A3B5ALI8_9TELE (Peptidylprolyl isomerase n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B5ALI8_9TELE)

HSP 1 Score: 55.1 bits (131), Expect = 5.910e-8
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   70 LTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLMLG 228
            + PGD T +PGKG TV+VHYVG L  +   FDSS  R  P + K+G GQ++ G
Sbjct:    8 IKPGDGTSYPGKGQTVTVHYVGTL-TNGKKFDSSRDRGDPFEFKLGKGQVIRG 59
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: UPI001BB28BB5 (peptidyl-prolyl cis-trans isomerase FKBP1B-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB28BB5)

HSP 1 Score: 52.8 bits (125), Expect = 4.810e-7
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   67 TLTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLM 222
            TL  GDAT++P KG TV+VHY G L  +   FDSS  R  P Q KIG GQ++
Sbjct:    8 TLKDGDATNYPKKGQTVTVHYTGTL-TNGKKFDSSRDRGKPFQFKIGKGQVI 58
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BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Match: A0A8C6LBU2_NOTFU (Peptidylprolyl isomerase n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6LBU2_NOTFU)

HSP 1 Score: 54.7 bits (130), Expect = 5.090e-7
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   67 TLTPGDATHFPGKGYTVSVHYVGKLEADHSVFDSSLARHTPLQCKIGLGQLMLG 228
            TL PGD  HFP +G TV VHYVG L  +   FDSS  R  P Q K+G G+++ G
Sbjct:    7 TLRPGDGQHFPPRGRTVVVHYVGTL-TNGKKFDSSRDRGEPFQFKLGAGEVIRG 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FZ00_ECTSI3.710e-3482.89Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A8I2YRW9_9AGAM4.600e-1054.72Peptidylprolyl isomerase n=1 Tax=Boletus reticuloc... [more]
A0A2A9NCD4_9AGAR5.220e-949.15Peptidylprolyl isomerase n=1 Tax=Amanita thiersii ... [more]
A0A409Y501_9AGAR1.540e-849.15Peptidylprolyl isomerase n=1 Tax=Gymnopilus dilepi... [more]
A0A371D1P8_9APHY2.950e-847.46Peptidylprolyl isomerase n=2 Tax=Polyporus TaxID=5... [more]
A0A812SJB8_SYMMI5.630e-853.70Peptidylprolyl isomerase n=1 Tax=Symbiodinium micr... [more]
X8JDB3_9AGAM5.910e-852.83Peptidylprolyl isomerase n=4 Tax=Rhizoctonia solan... [more]
A0A3B5ALI8_9TELE5.910e-850.94Peptidylprolyl isomerase n=1 Tax=Stegastes partitu... [more]
UPI001BB28BB54.810e-753.85peptidyl-prolyl cis-trans isomerase FKBP1B-like n=... [more]
A0A8C6LBU2_NOTFU5.090e-751.85Peptidylprolyl isomerase n=1 Tax=Nothobranchius fu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:95941..97759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZ00
PFAMsFKBP_C
Model size237
Max annot lvl2759|Eukaryota
KEGG koko:K09568
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.08e-35
EggNOG OGsCOG0545@1|root,KOG0544@2759|Eukaryota
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
Cds size237
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789932.6853294-CDS-P-littoralis_Contig194:95940..960391680789932.6853294-CDS-P-littoralis_Contig194:95940..96039Pylaiella littoralis U1_48CDSP-littoralis_Contig194 95941..96039 -
1680789932.7109826-CDS-P-littoralis_Contig194:96405..964631680789932.7109826-CDS-P-littoralis_Contig194:96405..96463Pylaiella littoralis U1_48CDSP-littoralis_Contig194 96406..96463 -
1680789932.7242384-CDS-P-littoralis_Contig194:97679..977591680789932.7242384-CDS-P-littoralis_Contig194:97679..97759Pylaiella littoralis U1_48CDSP-littoralis_Contig194 97680..97759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.31.1prot_P-littoralis_Contig194.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 95941..97759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.31.1

>prot_P-littoralis_Contig194.31.1 ID=prot_P-littoralis_Contig194.31.1|Name=mRNA_P-littoralis_Contig194.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp
MAQEGAAGEDGTAASSSGCSYVTLTPGDATHFPGKGYTVSVHYVGKLEAD
HSVFDSSLARHTPLQCKIGLGQLMLGKF*
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mRNA from alignment at P-littoralis_Contig194:95941..97759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.31.1 ID=mRNA_P-littoralis_Contig194.31.1|Name=mRNA_P-littoralis_Contig194.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1819bp|location=Sequence derived from alignment at P-littoralis_Contig194:95941..97759- (Pylaiella littoralis U1_48)
ATGGCGCAAGAGGGCGCGGCGGGGGAAGACGGCACGGCGGCGTCCTCATC
TGGGTGCTCCTACGTGACGTTGACACCTGGGTAAGAGGCGTGATTATTGA
GAGCTCTCGCTTCACATGCCCAGAATCTTGTTGATTTTTGGATCGGACCA
AGTACTTCGTATATCCACAGAGAAACATATTTTTTGAACCTGGTATCAAG
CTACGATTGTTAGACGTTCCTAATGCTGCAGAACCTATAATACAGGACAA
CACTAGTTTGGATACCTGTCCCGACGATAGTACATTGCAAGCAGTATCTC
CAGCGCCGAAGGGGTACTCCGTTGTGCCGTTCGTTGGAAGGACCACGGGG
TGTGTTTCTCTGTCTCTCGGATCAGCACGGGATGATTTTTATACGGCGGG
AGGCTGATGATTGAGCATTATATACAAACGTGATATGCAGCGTTTTTCTA
TAAAACGCTCCAGAGGTTGCAACCGAGATCATAGGCCGTAGTCTATCGTG
TAAGGCTCTTGCGGGATCCTAACCCGTTTGTTTTGGTCAGCGCTGTCACG
GTCAACATAGGTTAACCTATGACGGTAGTTTTTGTTTTGTGAAGTAACTG
GCAAAATAGAGTTACAGGTCGCAGGTCGCACATCCGGAGATCGTACTGTT
GTACAATCCCATCAATCATAGATGCATCAGGTGTCGGTTCAGAAAGCGGC
GGAAATACGTTCCCCCGAGATACTGATTGCGCCGCACATCGGCACGCCGG
GCATCAGGCATCAGGAATCATCAGGCATCCGGGCATCTGATGCCTGATAC
ATACCTGATTTCACCTGCTGATGCCTCTCTACTACCGCCCATCCTTGTTC
CCAGCGTTACGATACTGACTCTGAATATTAATTGCCACCGAGATCACCAG
TGCGGTAGCCCCACGAGAAGCACAGCGTATGCCACGACGGTTGACTCATC
GATGTGACGGTCCAGTCTATTCCTTCATCAGTGACTTTGATAACTATAGC
ACCAACACCAACTGCTTGCTGTGTAGGCAGTCCCTCTCTCTTTCAAGCCT
CTCTGATACAGTACGTACACGGGAGTCACCCTTCTCCAATGCACGTGTGT
ATGAGTCCATTCCAGATTTTATCTGCCTCAAACGCAGAAAAAAATAGTGA
TGGTTGGCCGAGGCTGAGGGAGAGAGACTCTCCACTCCTCTTCTGCTCTC
TCTTCTTGTTCTAGCTCGCGTCATGCGCCGCTTACTTTGCTGCCTTTTCC
CACCGATAACGCCCGGTTTGCTACGTGCTGTGCGGCGGGCACCCAGCGAT
GCCACTCACTTTCCGGGAAAAGGGTACACTGTGAGCGTCCACTACGTCGG
AAAGGTAAGTCTGAAGAGCAAATGCGCGCGCTCGCGTGTGTGTGTATGTG
GCATGGCTATGAACAGCACGAGGGTGTATTTTTTCTGGCAGCGACCACCC
AAAACTTTCGCGCGATAAACAAAATACCGACATCCTTATGGTACTCTGCT
GCTGGATGTACACAATAGCGGATCGAAGAGACCCGAAAACTTTATTTTGA
ATGTATCACATGCAGCATTTTTGACATTGATGGACCGCGCTGCTAGGGAA
GCCGGTTGACTATCCCGTCCCCGTAGACGCAAGTTTTGAGAAGATCAACG
GCTGAGTTATCATGTTGTAGCAACGCTACGGACTGACCAGGGCAACCCCC
TACCTCCCAATCCTCGGAAGCTGGAAGCAGATCACTCAGTTTTCGATTCA
AGTCTCGCGAGGCACACGCCCCTCCAGTGCAAGATTGGTCTCGGACAACT
CATGTTAGGCAAGTTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:95941..97759-

>mRNA_P-littoralis_Contig194.31.1 ID=mRNA_P-littoralis_Contig194.31.1|Name=mRNA_P-littoralis_Contig194.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig194:95941..97759- (Pylaiella littoralis U1_48)
ATGGCGCAAGAGGGCGCGGCGGGGGAAGACGGCACGGCGGCGTCCTCATC
TGGGTGCTCCTACGTGACGTTGACACCTGGCGATGCCACTCACTTTCCGG
GAAAAGGGTACACTGTGAGCGTCCACTACGTCGGAAAGCTGGAAGCAGAT
CACTCAGTTTTCGATTCAAGTCTCGCGAGGCACACGCCCCTCCAGTGCAA
GATTGGTCTCGGACAACTCATGTTAGGCAAGTTTTGA
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