mRNA_P-littoralis_Contig194.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.30.1
Unique NamemRNA_P-littoralis_Contig194.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: D7FZ00_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ00_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.080e-17
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 2 
Query:  548 QMSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELLAFAAP 682
            +MSVHQKI+LTVPP+ GYGM+GYPPIVPANATL+YE+ELL FAAP
Sbjct:   80 KMSVHQKIRLTVPPDYGYGMNGYPPIVPANATLIYELELLGFAAP 124
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: A0A8H3AHM7_9AGAM (Peptidylprolyl isomerase n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3AHM7_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 5.990e-8
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  548 QMSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELL 667
            Q+   QK +LT+PPE+GYG  GYPP++P N+TL++E+ELL
Sbjct:   82 QLCKGQKAKLTIPPEEGYGARGYPPVIPGNSTLVFEVELL 121
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: A0A1V9YC13_9STRA (Peptidylprolyl isomerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC13_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.880e-8
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 2 
Query:  548 QMSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELLAFAAP 682
            +MS  Q  +L +PP   YG HGYPP+VP N TL YE+ELL F +P
Sbjct:   73 RMSKGQIARLRIPPAYAYGEHGYPPVVPPNTTLFYEVELLVFTSP 117
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: A0A0N7L8W4_9BASI (Peptidylprolyl isomerase n=1 Tax=Ceraceosorus bombacis TaxID=401625 RepID=A0A0N7L8W4_9BASI)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-7
Identity = 22/41 (53.66%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:  548 QMSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELLA 670
            Q+SV ++ +LT+ P+ GYG  GYPP++PAN+TL++++ELLA
Sbjct:   66 QLSVGERAKLTITPDYGYGAQGYPPVIPANSTLIFDVELLA 106
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: A0A292PPU4_9PEZI (Peptidylprolyl isomerase n=1 Tax=Tuber aestivum TaxID=59557 RepID=A0A292PPU4_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-7
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  548 QMSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELL 667
            QMS+ +K  LT+ P+ GYG  G+PP++PANATL++E+ELL
Sbjct:   66 QMSLREKATLTITPDYGYGASGFPPVIPANATLIFEVELL 105
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: A0A6I2H126_9DELT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aggregicoccus sp. 17bor-14 TaxID=2583808 RepID=A0A6I2H126_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 1.450e-7
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  551 MSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELLA 670
            M V    +LT+PPE GYG+ GYPP++P N+TLL+E+ELLA
Sbjct:   66 MKVGGVRKLTIPPEMGYGVRGYPPVIPGNSTLLFEVELLA 105
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: A0A1G2BS03_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Komeilibacteria bacterium RIFCSPLOWO2_01_FULL_53_11 TaxID=1798552 RepID=A0A1G2BS03_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 2.010e-7
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  551 MSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELLA 670
            M V +K  LTVPPE GYG  GYPP++P NATL++++EL++
Sbjct:   52 MEVGEKKTLTVPPELGYGASGYPPVIPPNATLIFDVELIS 91
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: UPI0019BF62CF (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019BF62CF)

HSP 1 Score: 57.8 bits (138), Expect = 2.010e-7
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  551 MSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELLA 670
            M V  K++LT+PPE GYG  GYP ++P NATL++E+ELLA
Sbjct:   66 MVVGDKVKLTIPPELGYGRSGYPGVIPPNATLVFEVELLA 105
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: A0A5E3X3G6_9AGAM (Peptidylprolyl isomerase n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3X3G6_9AGAM)

HSP 1 Score: 57.8 bits (138), Expect = 2.060e-7
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  548 QMSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELL 667
            Q+S+  K  LTVPPE GYG  G+PP++P NATL++EIELL
Sbjct:   66 QLSLGTKAILTVPPELGYGSRGFPPLIPPNATLIFEIELL 105
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BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Match: A0A316VXG7_9BASI (Peptidylprolyl isomerase n=1 Tax=Ceraceosorus guamensis TaxID=1522189 RepID=A0A316VXG7_9BASI)

HSP 1 Score: 58.5 bits (140), Expect = 2.700e-7
Identity = 22/41 (53.66%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:  548 QMSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELLA 670
            Q+SV ++ +LT+ P+ GYG  GYPP++PAN+TL++++ELLA
Sbjct:  110 QLSVGERAKLTITPDYGYGAQGYPPVIPANSTLIFDVELLA 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ00_ECTSI8.080e-1782.22Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A8H3AHM7_9AGAM5.990e-857.50Peptidylprolyl isomerase n=2 Tax=Rhizoctonia solan... [more]
A0A1V9YC13_9STRA9.880e-855.56Peptidylprolyl isomerase n=1 Tax=Achlya hypogyna T... [more]
A0A0N7L8W4_9BASI1.070e-753.66Peptidylprolyl isomerase n=1 Tax=Ceraceosorus bomb... [more]
A0A292PPU4_9PEZI1.070e-757.50Peptidylprolyl isomerase n=1 Tax=Tuber aestivum Ta... [more]
A0A6I2H126_9DELT1.450e-760.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aggreg... [more]
A0A1G2BS03_9BACT2.010e-757.50Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candid... [more]
UPI0019BF62CF2.010e-760.00FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]
A0A5E3X3G6_9AGAM2.060e-762.50Peptidylprolyl isomerase n=1 Tax=Peniophora sp. CB... [more]
A0A316VXG7_9BASI2.700e-753.66Peptidylprolyl isomerase n=1 Tax=Ceraceosorus guam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:94395..95079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZ00
PFAMsFKBP_C
Model size158
Max annot lvl2759|Eukaryota
KEGG koko:K09568
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue4.63e-20
EggNOG OGsCOG0545@1|root,KOG0544@2759|Eukaryota
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
Cds size135
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789932.63508-CDS-P-littoralis_Contig194:94394..945291680789932.63508-CDS-P-littoralis_Contig194:94394..94529Pylaiella littoralis U1_48CDSP-littoralis_Contig194 94395..94529 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789932.6477475-UTR-P-littoralis_Contig194:95056..950791680789932.6477475-UTR-P-littoralis_Contig194:95056..95079Pylaiella littoralis U1_48UTRP-littoralis_Contig194 95057..95079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.30.1prot_P-littoralis_Contig194.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 94395..94529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.30.1

>prot_P-littoralis_Contig194.30.1 ID=prot_P-littoralis_Contig194.30.1|Name=mRNA_P-littoralis_Contig194.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
MSVHQKIQLTVPPEKGYGMHGYPPIVPANATLLYEIELLAFAAP*
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mRNA from alignment at P-littoralis_Contig194:94395..95079-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.30.1 ID=mRNA_P-littoralis_Contig194.30.1|Name=mRNA_P-littoralis_Contig194.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=685bp|location=Sequence derived from alignment at P-littoralis_Contig194:94395..95079- (Pylaiella littoralis U1_48)
CGTGGGAAGAGGTCCTCCCCAAGGTGTGTAAATAATCATTTGATAGAGAG
CGCGCAAGGATAGAAGTAACGTGATGGGCGAGGGAAACCGACCCACCCTT
AATGTGGTCTCACGAGAGAGCCATGTCGACCATTATCCGACGTCTCAAGT
GTGGGCAGTACGACGAACAGAGAGGCAACAGACGGCGCGCGTTTAGCTGC
TATTATTCTATTATTATTACGTGTAGTCTCTTTTCCGGGCGCATCAGCCT
ATGGTTTTTGGTGTACTGAACGTCCATGAATGACAAGAAAAGCGGAAGGG
GCACACAGGTACTTTTTTTAAACATTTGCATTGGTTCGTTCGCCGTCTGC
CTGCTGCCCTTCTCGAAGAAGACATGTACTCTCGGTGTAGAGTGATCGAC
AGTGGGTCGGGTGATGTCTCTCGCGGTTGGTCGTGTTCGCGTGTTGTTTT
TCGCTGGATGAAAAAATTAACACACCCGTTATCATTCCTGCTGGTGGTGC
TCGTGCTGGTGGTGCTGGTGCTGGTGCTGCGGATGATGACAATGATGCAG
ATGAGCGTTCACCAGAAGATTCAGCTCACCGTGCCGCCAGAAAAGGGCTA
CGGCATGCACGGCTACCCTCCCATCGTGCCGGCGAACGCCACCTTGCTCT
ACGAGATAGAGCTCTTGGCTTTCGCCGCGCCATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:94395..95079-

>mRNA_P-littoralis_Contig194.30.1 ID=mRNA_P-littoralis_Contig194.30.1|Name=mRNA_P-littoralis_Contig194.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig194:94395..95079- (Pylaiella littoralis U1_48)
ATGAGCGTTCACCAGAAGATTCAGCTCACCGTGCCGCCAGAAAAGGGCTA
CGGCATGCACGGCTACCCTCCCATCGTGCCGGCGAACGCCACCTTGCTCT
ACGAGATAGAGCTCTTGGCTTTCGCCGCGCCATGA
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