mRNA_P-littoralis_Contig194.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.47.1
Unique NamemRNA_P-littoralis_Contig194.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:149197..150183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size987
Hectar predicted targeting categoryother localisation
Exons1
Cds size648
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.8387935-UTR-P-littoralis_Contig194:149196..1495161680789931.8387935-UTR-P-littoralis_Contig194:149196..149516Pylaiella littoralis U1_48UTRP-littoralis_Contig194 149197..149516 +
1680789931.8576496-UTR-P-littoralis_Contig194:150164..1501831680789931.8576496-UTR-P-littoralis_Contig194:150164..150183Pylaiella littoralis U1_48UTRP-littoralis_Contig194 150165..150183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.8490098-CDS-P-littoralis_Contig194:149516..1501641680789931.8490098-CDS-P-littoralis_Contig194:149516..150164Pylaiella littoralis U1_48CDSP-littoralis_Contig194 149517..150164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.47.1prot_P-littoralis_Contig194.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 149517..150164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.47.1

>prot_P-littoralis_Contig194.47.1 ID=prot_P-littoralis_Contig194.47.1|Name=mRNA_P-littoralis_Contig194.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp
MSGSVVVERLLTRTPAVSPNISVPFGTRVPAASQTFYVPFGTRVHTRSKP
KILCCVWDPCTCSKSMFLFRLGPLYLQQAKHLCSVWDPRTCSKPNIYVAF
GTRVRAASQCFCSVWDPCTCSKPNIYVPFGTRIQAAAAAVCTVVMRGEGQ
AGALRLSRVFSLKCSGDAYTGLPCAYMNTYKNNRKMGAAVESRRVACALL
PVSGRPALSIACDLS*
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mRNA from alignment at P-littoralis_Contig194:149197..150183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.47.1 ID=mRNA_P-littoralis_Contig194.47.1|Name=mRNA_P-littoralis_Contig194.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig194:149197..150183+ (Pylaiella littoralis U1_48)
GGTGGATGGCCGCTGTTTTCGCTGTAGTTGCTGCTGGTTGGTGTAGGTTG
TTTGGTGGTGGTGGTGATCGTGGTGGTGATCGTTGTGGTGGTGCTGATGT
TGTTGTTGTTGTTGTCGTCGTTGTCGTTGTTGTGTGTCGTTGTCGTTGCT
CCCGCTTGCGCCTTTGCTGCTGCTCCTACTGCCTCGGATGTGTGAAAGGC
ATGCCGAAGTATTGGGGCACCTTGATGTATGTTGACGCGATTTGATGGGA
ATATCTACGGCACCCTCCCCGTTCTACCGCCTTGATGACGACCTCTCAGT
CTTGATGTCTGGCTTCGGGGATGTCCGGTTCTGTCGTCGTCGAGCGCCTC
CTTACACGGACACCGGCTGTGTCGCCAAACATTTCTGTTCCGTTCGGGAC
CCGTGTACCTGCAGCAAGCCAGACATTTTATGTTCCGTTCGGGACCCGTG
TACATACACGCAGCAAACCAAAAATTTTATGTTGCGTTTGGGACCCGTGT
ACGTGCAGCAAGTCAATGTTTCTGTTCCGTTTGGGACCCTTGTATCTGCA
GCAAGCCAAACATTTATGTTCCGTTTGGGACCCGCGTACATGCAGCAAGC
CAAACATTTATGTTGCGTTTGGGACCCGTGTACGTGCAGCAAGTCAATGT
TTCTGTTCCGTTTGGGACCCGTGTACCTGCAGCAAGCCAAACATTTATGT
TCCGTTTGGGACCCGCATACAAGCAGCAGCAGCAGCAGTATGTACAGTAG
TGATGCGCGGAGAAGGCCAGGCAGGCGCCCTTCGCCTGTCCCGCGTCTTT
TCGCTCAAATGTTCCGGTGATGCATACACAGGTCTGCCCTGTGCATACAT
GAATACATACAAAAACAATCGCAAGATGGGGGCGGCAGTCGAGTCGCGTC
GTGTCGCTTGTGCCCTTCTCCCCGTGTCAGGCAGGCCCGCCCTCTCAATC
GCGTGTGATCTCTCGTAATTTTGTTCGTTGTTTAACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:149197..150183+

>mRNA_P-littoralis_Contig194.47.1 ID=mRNA_P-littoralis_Contig194.47.1|Name=mRNA_P-littoralis_Contig194.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig194:149197..150183+ (Pylaiella littoralis U1_48)
ATGTCCGGTTCTGTCGTCGTCGAGCGCCTCCTTACACGGACACCGGCTGT
GTCGCCAAACATTTCTGTTCCGTTCGGGACCCGTGTACCTGCAGCAAGCC
AGACATTTTATGTTCCGTTCGGGACCCGTGTACATACACGCAGCAAACCA
AAAATTTTATGTTGCGTTTGGGACCCGTGTACGTGCAGCAAGTCAATGTT
TCTGTTCCGTTTGGGACCCTTGTATCTGCAGCAAGCCAAACATTTATGTT
CCGTTTGGGACCCGCGTACATGCAGCAAGCCAAACATTTATGTTGCGTTT
GGGACCCGTGTACGTGCAGCAAGTCAATGTTTCTGTTCCGTTTGGGACCC
GTGTACCTGCAGCAAGCCAAACATTTATGTTCCGTTTGGGACCCGCATAC
AAGCAGCAGCAGCAGCAGTATGTACAGTAGTGATGCGCGGAGAAGGCCAG
GCAGGCGCCCTTCGCCTGTCCCGCGTCTTTTCGCTCAAATGTTCCGGTGA
TGCATACACAGGTCTGCCCTGTGCATACATGAATACATACAAAAACAATC
GCAAGATGGGGGCGGCAGTCGAGTCGCGTCGTGTCGCTTGTGCCCTTCTC
CCCGTGTCAGGCAGGCCCGCCCTCTCAATCGCGTGTGATCTCTCGTAA
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