mRNA_P-littoralis_Contig194.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.45.1
Unique NamemRNA_P-littoralis_Contig194.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:139952..140913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size962
Hectar predicted targeting categoryother localisation
Exons1
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.7960618-CDS-P-littoralis_Contig194:139951..1406951680789931.7960618-CDS-P-littoralis_Contig194:139951..140695Pylaiella littoralis U1_48CDSP-littoralis_Contig194 139952..140695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.806976-UTR-P-littoralis_Contig194:140695..1409131680789931.806976-UTR-P-littoralis_Contig194:140695..140913Pylaiella littoralis U1_48UTRP-littoralis_Contig194 140696..140913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.45.1prot_P-littoralis_Contig194.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 139952..140695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.45.1

>prot_P-littoralis_Contig194.45.1 ID=prot_P-littoralis_Contig194.45.1|Name=mRNA_P-littoralis_Contig194.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=248bp
HVNCCLLCLCIYSSCTNQQFPKRIARSAATCRHHLELAGERGCPRCSGGG
ESGGSARCCPAYSLLLHLRRYGPTAVRREKATRHQSRHQRGTIQKLLSVH
RPRPHSRLLSRSRGPPGAFASSLSLSCVRPTRSCWWRFAFAPPPLAGLHL
WKEEKEKTHRKTWRYFRMTLVLKNSPGFGKTCRRSSTRRSRAAPAPAAPP
TSPTLVLLMAVEPAPMMIPPASQRTDLRAVAPAPAPSAPTRLLLLKV*
back to top

mRNA from alignment at P-littoralis_Contig194:139952..140913+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.45.1 ID=mRNA_P-littoralis_Contig194.45.1|Name=mRNA_P-littoralis_Contig194.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=962bp|location=Sequence derived from alignment at P-littoralis_Contig194:139952..140913+ (Pylaiella littoralis U1_48)
CATGTCAACTGCTGTCTTCTTTGTCTGTGCATTTACAGCAGTTGCACCAA
CCAGCAGTTTCCAAAACGGATCGCGCGATCCGCTGCCACCTGCCGCCACC
ACTTGGAGCTCGCGGGGGAGAGAGGTTGTCCGCGGTGCTCGGGTGGAGGT
GAATCCGGTGGAAGCGCGAGGTGCTGCCCGGCGTACAGCCTACTGCTGCA
CCTACGACGATACGGGCCGACCGCTGTACGGCGGGAGAAAGCCACGCGGC
ATCAGAGTAGACATCAGAGAGGAACGATACAGAAACTCCTTTCAGTGCAT
AGACCGCGACCGCACAGCAGACTTCTGTCTCGGTCTCGCGGACCGCCGGG
CGCCTTTGCTAGCTCTCTTTCGCTATCATGCGTTCGGCCCACGCGCTCTT
GTTGGTGGCGCTTTGCCTTTGCTCCGCCTCCATTGGCAGGCCTGCACTTG
TGGAAGGAAGAGAAGGAGAAGACACACCGCAAGACCTGGAGATATTTCAG
AATGACCCTGGTTCTGAAGAACAGCCCTGGGTTCGGCAAGACATGCCGCA
GGAGCAGCACGAGGAGGAGCAGAGCGGCACCAGCACCAGCAGCGCCACCA
ACGTCGCCGACGCTGGTGCTGCTGATGGCGGTCGAACCAGCACCGATGAT
GATTCCACCTGCCTCGCAGCGGACGGATCTTCGTGCAGTAGCACCGGCTC
CAGCACCCTCGGCACCGACGAGGCTGCTGCTGCTGAAAGTATAAGCACCG
CAGACCTTGCCGCCGCCGACGCCGCCGACGCCGCCGCTGCTGCTGCTACG
GACAGCGCTAATACCGACGATTCTACCTGCTCGGCGGACGGATCTTCTTG
CACCATCACAGGGGAGGAGGCGGTGGTTGCGGCGGAAGCGGCGGCGGCGG
CGGCAACACCAACCGAGGAGCGGCCGCAGCGGAACACCAAGGAGGAGGAG
AGCAAGGAGGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig194:139952..140913+

>mRNA_P-littoralis_Contig194.45.1 ID=mRNA_P-littoralis_Contig194.45.1|Name=mRNA_P-littoralis_Contig194.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig194:139952..140913+ (Pylaiella littoralis U1_48)
CATGTCAACTGCTGTCTTCTTTGTCTGTGCATTTACAGCAGTTGCACCAA
CCAGCAGTTTCCAAAACGGATCGCGCGATCCGCTGCCACCTGCCGCCACC
ACTTGGAGCTCGCGGGGGAGAGAGGTTGTCCGCGGTGCTCGGGTGGAGGT
GAATCCGGTGGAAGCGCGAGGTGCTGCCCGGCGTACAGCCTACTGCTGCA
CCTACGACGATACGGGCCGACCGCTGTACGGCGGGAGAAAGCCACGCGGC
ATCAGAGTAGACATCAGAGAGGAACGATACAGAAACTCCTTTCAGTGCAT
AGACCGCGACCGCACAGCAGACTTCTGTCTCGGTCTCGCGGACCGCCGGG
CGCCTTTGCTAGCTCTCTTTCGCTATCATGCGTTCGGCCCACGCGCTCTT
GTTGGTGGCGCTTTGCCTTTGCTCCGCCTCCATTGGCAGGCCTGCACTTG
TGGAAGGAAGAGAAGGAGAAGACACACCGCAAGACCTGGAGATATTTCAG
AATGACCCTGGTTCTGAAGAACAGCCCTGGGTTCGGCAAGACATGCCGCA
GGAGCAGCACGAGGAGGAGCAGAGCGGCACCAGCACCAGCAGCGCCACCA
ACGTCGCCGACGCTGGTGCTGCTGATGGCGGTCGAACCAGCACCGATGAT
GATTCCACCTGCCTCGCAGCGGACGGATCTTCGTGCAGTAGCACCGGCTC
CAGCACCCTCGGCACCGACGAGGCTGCTGCTGCTGAAAGTATAA
back to top