mRNA_P-littoralis_Contig194.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.1.1
Unique NamemRNA_P-littoralis_Contig194.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:38..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size579
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.709522-UTR-P-littoralis_Contig194:37..931680789931.709522-UTR-P-littoralis_Contig194:37..93Pylaiella littoralis U1_48UTRP-littoralis_Contig194 38..93 +
1680789931.7304876-UTR-P-littoralis_Contig194:429..6161680789931.7304876-UTR-P-littoralis_Contig194:429..616Pylaiella littoralis U1_48UTRP-littoralis_Contig194 430..616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.7218022-CDS-P-littoralis_Contig194:93..4291680789931.7218022-CDS-P-littoralis_Contig194:93..429Pylaiella littoralis U1_48CDSP-littoralis_Contig194 94..429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.1.1prot_P-littoralis_Contig194.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 94..429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.1.1

>prot_P-littoralis_Contig194.1.1 ID=prot_P-littoralis_Contig194.1.1|Name=mRNA_P-littoralis_Contig194.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MTLRRMNNKAGISYGSTHRGKRTKLHVIGLRRCHLNYYCLLQRQRQDLAA
ARASSLTLKNEKLLTHVSRQLCHICLPVSFTSAGTSVAVVFPTHPTLFLR
KWRGGEDDIWG*
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mRNA from alignment at P-littoralis_Contig194:38..616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.1.1 ID=mRNA_P-littoralis_Contig194.1.1|Name=mRNA_P-littoralis_Contig194.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig194:38..616+ (Pylaiella littoralis U1_48)
CTCTCGTTATTTGCCAGTAAGTTACCTTCCAGACTTTGTAGAAAATTATA
ATAAAAATGACACTTCGAAGAATGAACAATAAAGCGGGTATTTCGTACGG
CTCCACCCATAGGGGGAAGAGAACGAAATTACATGTTATTGGTCTACGGA
GATGTCATTTAAATTATTATTGTTTACTGCAAAGACAGAGGCAGGATCTC
GCAGCAGCACGAGCCTCTAGTCTCACTCTGAAAAACGAAAAGCTTCTCAC
ACACGTGAGTAGACAACTCTGCCACATCTGCCTGCCGGTCAGCTTTACTT
CTGCGGGAACTAGTGTTGCTGTCGTTTTTCCCACCCATCCCACCCTTTTT
CTTCGAAAGTGGAGAGGGGGGGAGGACGACATCTGGGGATGATGGTATTT
TTATTAAATCGTGGATATTTTAGAGTAATTATTTTACAAATGACTGGTAA
AGAGAAACGTGGCCTGATGGTTGATGTCAGTGGTATATTACCACCGGGGG
TCTCGGTCTATCGAGGCAGCATTTGTTGGGCCCTGGCCAGTTGACATGAA
AGGTAACTTTGGTTGCTGGATGAGAGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:38..616+

>mRNA_P-littoralis_Contig194.1.1 ID=mRNA_P-littoralis_Contig194.1.1|Name=mRNA_P-littoralis_Contig194.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig194:38..616+ (Pylaiella littoralis U1_48)
ATGACACTTCGAAGAATGAACAATAAAGCGGGTATTTCGTACGGCTCCAC
CCATAGGGGGAAGAGAACGAAATTACATGTTATTGGTCTACGGAGATGTC
ATTTAAATTATTATTGTTTACTGCAAAGACAGAGGCAGGATCTCGCAGCA
GCACGAGCCTCTAGTCTCACTCTGAAAAACGAAAAGCTTCTCACACACGT
GAGTAGACAACTCTGCCACATCTGCCTGCCGGTCAGCTTTACTTCTGCGG
GAACTAGTGTTGCTGTCGTTTTTCCCACCCATCCCACCCTTTTTCTTCGA
AAGTGGAGAGGGGGGGAGGACGACATCTGGGGATGA
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