mRNA_P-littoralis_Contig194.114.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.114.1
Unique NamemRNA_P-littoralis_Contig194.114.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:341834..347475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2333
Hectar predicted targeting categorysignal peptide
Exons7
Cds size1290
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.114.1prot_P-littoralis_Contig194.114.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 342478..347013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.5150363-UTR-P-littoralis_Contig194:341833..3422071680789931.5150363-UTR-P-littoralis_Contig194:341833..342207Pylaiella littoralis U1_48UTRP-littoralis_Contig194 341834..342207 +
1680789931.526044-UTR-P-littoralis_Contig194:342270..3424771680789931.526044-UTR-P-littoralis_Contig194:342270..342477Pylaiella littoralis U1_48UTRP-littoralis_Contig194 342271..342477 +
1680789931.602217-UTR-P-littoralis_Contig194:347013..3474751680789931.602217-UTR-P-littoralis_Contig194:347013..347475Pylaiella littoralis U1_48UTRP-littoralis_Contig194 347014..347475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.536893-CDS-P-littoralis_Contig194:342477..3425661680789931.536893-CDS-P-littoralis_Contig194:342477..342566Pylaiella littoralis U1_48CDSP-littoralis_Contig194 342478..342566 +
1680789931.54919-CDS-P-littoralis_Contig194:343584..3436781680789931.54919-CDS-P-littoralis_Contig194:343584..343678Pylaiella littoralis U1_48CDSP-littoralis_Contig194 343585..343678 +
1680789931.5570338-CDS-P-littoralis_Contig194:344407..3449531680789931.5570338-CDS-P-littoralis_Contig194:344407..344953Pylaiella littoralis U1_48CDSP-littoralis_Contig194 344408..344953 +
1680789931.5649865-CDS-P-littoralis_Contig194:345284..3455231680789931.5649865-CDS-P-littoralis_Contig194:345284..345523Pylaiella littoralis U1_48CDSP-littoralis_Contig194 345285..345523 +
1680789931.5736449-CDS-P-littoralis_Contig194:346158..3463631680789931.5736449-CDS-P-littoralis_Contig194:346158..346363Pylaiella littoralis U1_48CDSP-littoralis_Contig194 346159..346363 +
1680789931.592447-CDS-P-littoralis_Contig194:346896..3470131680789931.592447-CDS-P-littoralis_Contig194:346896..347013Pylaiella littoralis U1_48CDSP-littoralis_Contig194 346897..347013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.114.1

>prot_P-littoralis_Contig194.114.1 ID=prot_P-littoralis_Contig194.114.1|Name=mRNA_P-littoralis_Contig194.114.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=430bp
MLSGGSCAVLCLLVLNLAASWYTLYEQQAVILSSSSSLTMMMVVLTVVVA
TALGLSVGWLSASLKGEQTAHEAARAELAEKINQENNANKAINSLKNQHK
IMKTRVAREKSESHKKKNQHKIMEARAAREKSEFHKKLEVRTEEVRQLEE
EIATLKTANDTLDRRLVSKDELVDTVEMCLNHVAAKLEVARGEIDAKGVE
ITGLNRRLELCADERKASLIQLEEAQAATDGGKEDLELKTKLKEALALVE
MHERIGTRMRATIMRLDGELASLQRLPTMDLRLPASSALPHVRGNTASIS
NSGASNVTRSHDSSAGTLSVTLSGSGTVNTCSRDPSSSPSNSVSIDNSGD
MSDSDSISSMSDSVGEVVSDSGSVQQPMVTVPPLIPSPLALAVAIAQGHL
LSRPPYTARPPTTGRRNGSGVEEETKGAR*
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mRNA from alignment at P-littoralis_Contig194:341834..347475+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.114.1 ID=mRNA_P-littoralis_Contig194.114.1|Name=mRNA_P-littoralis_Contig194.114.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5642bp|location=Sequence derived from alignment at P-littoralis_Contig194:341834..347475+ (Pylaiella littoralis U1_48)
CAGAAGCAAAGCTGATGGGGTCGTGCACAATCCTAAACGGACATGAAAAA
AATGCGGCGAGATCAGTGAAAACGTTCGGGGATAGGTTTATCATCATGTC
ATCCAACAGACCGATCGAAGCCGAATAAGGCACACGCGACTGAGTGCGCT
GTCTAAACGAGAGAGGACAACAGACGCGTGGGGGGAATAGCAATTGGATT
GGACTACGTTAGGGTGGAGATGGAGGGATGCTGCACGGGGAATTCCTTGC
TTTCAGCAGCAGCAAGCGGGTACCACCGCCCACCCCGCAGGAGGGCACAG
CGGTCAAAGATTTGCTTCTGGAATGCTGATGCCAGAGTATTGGCGCCTTT
GGGAGATCTTTTGTAGCAGGAGTCGCCAGGATCGTTGGGGGCCAACGCAA
GCGTGGTCCCCGGTGAATCCGCAGGCGTACGTGAGAGGAGCCCTGGGGAT
GAATCACGGCTTGCCCCGAACGAAACGAAACGCCTTCTTTCTCTCGTTCC
TTCGGTCGATCACCTCGTCATCTCTCTCGCGAACGAACACATACAATACA
CCACCCCGGAGAAGAGCGAGTAAACAACCGGCATCTGCGCACATCCACCA
ACCACATAAAACACCACCAACAGCTAAGCCTGAGTGCGAAAACCATGTTG
AGTGGTGGTTCTTGTGCCGTCCTCTGCCTTTTGGTGCTCAACCTGGCCGC
CTCTTGGTACACGTTGTACGAGCAGCAAGCAGTGTGAGTGAGCGTCATAA
TGATACTGCATCAACACATGAGACTGCTTCTGTCTGGATCGACTCTCAAA
GAGAAGCGGGTGGCAGGCAAGCAGCAGCGGTGAAACCGAGCGAGCCTACC
TTCGTACATACGAAGTATTTGTCGTTCTCCCAGATACCCTATTTCGAGGG
TGTGCTTGGAGCGGTGTCTTGAGTCGGGGGTCTTACCTCCGGCGGAATCG
CTATTCTTCATCAGAAGAGGGTTGCCCCGGAATCGTGAACGACTTATACG
TGAACATGATGGCTCGTCATTTTGGCGGTGGTCTCGCACACAGCAGCAGC
AACAGCAGCAACAACAGCAACAACTTATTGTTTGTCTTCGAGTTGAACTT
AATACCCCGACACGAGGTTTATATCAGCAATCACAGGTAACACACGGTAC
GGCGGTGGGTCTGCTGCAACTTGCTCCTTCCGTCTTCGGTCATCATAGCT
ATAATTGCGCCTTTTGCTCCCCTCTTCACTTTCGGAACAATAAGCCGAGT
CGGCGTAGCCTCCTCTCATTTCAAGCCAATTTGCTGTGCGTGTCGACAGC
AATGGCGTTGTTTTGGAGGCTGCTTGGCGTTTCCTTTTCTTGCCTACTTC
CCTCGTAAACATTCGTGGGCAATACCACACGTGAGACGGGTGTTGGGTGC
GCGACGGTGTTTTTTACGTGTTTTACTGCGTTGACATGTTTACGGTGTAT
CTCTTTTTGATGAATCATTCGCCAACGTAGGCAGGTGACCTTCATTGTCT
CTCTTGCCTGTATACGCATGTTTTCCCTGCTCCCGCTGAACGTATGTGTG
CTTTTTTTGTCACTGCTGCTGTTGTGCGATGGAAGGAGATGCTGTACGGT
ATGATTCACTTTCTACGTTTTGTGTTGTACTTCGAATATTTTGGAAGCCT
GTGACCACGGAAGTCGTTGAGATGTTTTGGCACAAACTACTCAATTTGAT
CCCAGAATGTGCCCTCCTCTCTTGCTGCCCTCCCGTCGTCATCACCAATA
GAATACTGTCGTCATCGAGCAGCCTGACCATGATGATGGTGGTGCTGACT
GTCGTTGTGGCGACCGCACTCGGCCTCTCTGTTGGTTGGCTGTCGGTGAG
TCTTTCGTTTGTATACACACAAAATACAAACTTCTGCTGCTGTGGTAGAT
AGTGGTCGAAGTCGGGGCAGAGACCAACGGACGGTGCACCGTACTCACCG
CGTGCTGGTGGACTTGGAACAAGCAATCTAGTGAGTAGGAAGGTCAAGGC
CAGAAGACCAGACATGTATGCAGCCTACTTCAAAGCTTGTAGCGAATATC
ATTGGTATCTCGCGAAAGGTGCCGCGTGCGTCAACCATGAGATAGATAAA
AACAGAGGATGTTATTAGGCACGCGGGGGGGAGGCGGTTTGGAATGTGCA
TGAGTGGAACCAGACCTTACTACCATACCAGTAGAAGGAGTCTCATGATG
ACCTCGACTTTGGGGAAGGAAAGTGAAAGGACGTGTTCATCTGATTTTGC
GTGCAGTATGATTAGTTCCCCACGCAACCGGAGGGAAGAGCATCTCATAC
TGCTATCCTTGATATAAGAAGAAGAAAGAGGCAGATAGAGACAGAAATGA
CGGGCAGGGATTACGGTAGAGTGCAGGTGCAGAAGATTACTTGCCGAAAA
CGTGATTTCTGCAGTAAAGTGGTCTCTTTCTCTCTCTGATTTTTTATTTC
CTCGGGCCCAGGCCAAATAGCAATCATCACTAGAGGACATCCGAAAGAAC
GACAATAAACAACGCAGTATTTACCCCCAACGACCGACCGCATTGCTGTA
ACGTTGCTTGCTTGCTTCGAGCAGGCAAGCCTCAAGGGTGAGCAGACGGC
GCACGAGGCTGCTAGGGCAGAGCTCGCCGAGAAAATCAACCAGGAAAACA
ACGCGAACAAAGCGATTAATTCGTTAAAGAATCAGCACAAAATAATGAAG
ACTAGGGTTGCTCGAGAGAAGAGCGAATCCCACAAGAAGAAGAATCAGCA
CAAAATAATGGAGGCTAGGGCTGCTCGAGAGAAGAGCGAATTCCACAAGA
AGCTGGAGGTTCGCACCGAAGAGGTAAGGCAACTGGAGGAGGAAATAGCA
ACCCTGAAGACCGCGAACGACACTCTCGACCGGCGTCTAGTAAGCAAGGA
CGAACTGGTGGACACCGTCGAGATGTGTCTGAACCATGTGGCCGCGAAGC
TCGAGGTCGCACGGGGAGAGATAGACGCCAAGGGTGTCGAGATTACCGGA
CTTAACCGACGTCTTGAGCTGTGCGCCGATGAGCGCAAGGCGAGCTTGAT
CCAGCTCGAAGAGGCCCAGGCGGCGACCGACGGAGGGAAAGAGGACCTTG
AGCTCAAGACCAAGCTGAAGGCGAGATGAAAAAAACGTCGGCAGAGTCGG
ACAAAGCTGTGACAGAGAGTTGTTGTTGGAGTATATGGGTTCGACGCAAG
AACGCAGGAGCAGGGTGAAGGGGGGGGTGAGCGCGTGCCGCAAAACATTT
GTAAAAGGTGTGGTCACCACTAGGTTTTGTGTTCAAAAGTATGTGAGTGT
CACGTTGTTTCAAGTCCGACGAAGCTTGCCGCTCGCTTGCCGCGCTGTGC
CGTGCCCCTCCGTCTGTCCGTGCTGTCGTGTCTTCCGGTGCTCCAAAACA
CACCACATGTTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCGTGACACA
GGAGGCACTCGCCCTGGTTGAGATGCACGAGCGGATCGGCACGAGGATGA
GAGCGACGATCATGCGCCTGGACGGCGAGCTGGCGAGCCTCCAGCGCCTG
CCGACGATGGACCTTCGGCTGCCTGCTTCGTCCGCACTGCCCCACGTCCG
TGGCAACACGGCCTCCATCAGCAATAGCGGGGCAAGCAACGTCACCCGGA
GCCACGACAGCAGCGCGGGGACGCTATCCGTCACACTGAGGTACCGCATT
ATCATGCTGCTGTTACCAAAATGAATGTACCGCTACGGTACACAGCGAAG
GGAGGGCACGCGGGGGGGGTAGTCCCATGAAAATACAACACACGCGTCTC
TTTCAAAGCAATACGTTGAATTCGTATGCTGCCGTGACCGACGTTCGGTG
ACACTTGATCCCCTTCCTTGCAAGACTATTTGAACCCCTACTAGTGTTTC
GTGCTGCGCTTTTGGCGATCAACATTACCATCGCCTTTGCATGTACCGTA
TGTTTAGCCGGCGTGCTACACCGTAACGTGATTATTCCTGTGTATTAGAT
TTGTCATTGCCTCAGTGTATTTCTGTACGGCATCGCGTCACACCGTCCCA
TTTCTCAGCACTACGGAGGCATTATCATCGGAAGTTTACTGTTGTTCACC
TTGAGTTCATTGCGTGTAAGATGGGCTATATTAGTACGTTCTAGGATTAG
GCGATATTTTCCAGCCGACACCATTTCAAGCCTCTGCAGAAATAGTTCAC
ACTATATGGGTCCCGCCCCAGGTGAGTGATTCTTGGTGGCCGTGTACGCC
CTATTTATTTTTCTTTCACGGTCCCCCCCCTTTCCCCTCCCCTCCCCCTC
CCATCTCTCCATTTTCGTGCCCCAGCGGCAGTGGAACGGTCAATACCTGC
AGCAGGGACCCCAGCAGCAGCCCCAGCAACAGCGTCAGCATCGACAACAG
CGGCGACATGAGTGACAGCGACAGTATCAGCAGCATGAGCGACAGCGTAG
GCGAGGTCGTGAGCGACAGTGGGAGCGTGCAGCAGCCGATGGTTACCGTT
CCCCCGCTCATCCCCTCACCGCTGGCACTGGTAAGCAATCGCTATGATAC
CACGCCTCTCAATCCCACATTCAGTAGTGCGCCAGGTTTCTGTTCGTGAT
TTACGACTGACCCTGCCCGCCGAACCCCTGCTCCCCCCCCGCGAAACCTG
TCTCCAAAACTGACCAAAACTTGTGCACGCAGCTCATGTTTTTTCCCTTC
GTATCATACCCTATACCAACTTTCTCCGTGACAAGCTGGCGGCCAGATGG
ACTAGGTAGCTGCCGTCGTTCAGGGTCAGGCAGACCAAAAACCTCATCGA
TTGATGATGTGATGCAGTCTCGTCAAGGCTGCCATGAGAGTCGACCGAGC
CTCTTATTTACCTGCTACGCCCTAATATATTTACACACACAAACACACGC
ACACCGCCACCACAGCTATCTTGCATCTTGCTGGAACGAAAGTACATATG
CTGACTTTCAAGCAGATGGAGAGTTTGTTGACACAATGTTGATACTATTT
CCTTTCCGCTCTTTCCTGGTTTGGGTTGTGCTCGTGGATGCTTTGTTTCT
TTTCCACCACCAGGCGGTAGCCATAGCTCAAGGTCATCTGCTGAGCCGAC
CACCGTATACCGCGAGGCCCCCCACGACAGGCCGCCGAAACGGCTCCGGG
GTGGAGGAGGAGACCAAGGGGGCACGATAGCCAGACCCGGAGCAGCCTAC
CCAAGATATCCGCGTCGCAAACAGGCCGTCGTCGATTTATTTCAGTCTTG
GCCTCGGTGACCACGTGGGAGAGACGATCAACCAGGCTTATACTGGAATG
AAACGATGGCGGCCTGCCCGTGGCGAGAAGATCAACTAGGCTCTCTTATG
ATAATGTTTGACGATGCCGGCCTATCTGTGTCGCGACTATCTAAAGTAAA
CTACACAGCGGCAACGCGGTTGCTCCCACCCCTCCTGAGCGAGGTTAGGT
AGACCGGACAATCACAACTCTGACCGCAGTTTGGCCAATACATCGCGACA
CGAATAAACAACGCAGACGGACGCTGTGAGACATGCCGTTGCTGCTGCTT
CCAACTAAGAACGTTTTTTTCACGTTTTTCAATGGGAAATGGCGAATGCC
ACGATGATTGTAGTGTTGCCTTTCAGTGTAGGCGGTTCAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:341834..347475+

>mRNA_P-littoralis_Contig194.114.1 ID=mRNA_P-littoralis_Contig194.114.1|Name=mRNA_P-littoralis_Contig194.114.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1290bp|location=Sequence derived from alignment at P-littoralis_Contig194:341834..347475+ (Pylaiella littoralis U1_48)
ATGTTGAGTGGTGGTTCTTGTGCCGTCCTCTGCCTTTTGGTGCTCAACCT
GGCCGCCTCTTGGTACACGTTGTACGAGCAGCAAGCAGTAATACTGTCGT
CATCGAGCAGCCTGACCATGATGATGGTGGTGCTGACTGTCGTTGTGGCG
ACCGCACTCGGCCTCTCTGTTGGTTGGCTGTCGGCAAGCCTCAAGGGTGA
GCAGACGGCGCACGAGGCTGCTAGGGCAGAGCTCGCCGAGAAAATCAACC
AGGAAAACAACGCGAACAAAGCGATTAATTCGTTAAAGAATCAGCACAAA
ATAATGAAGACTAGGGTTGCTCGAGAGAAGAGCGAATCCCACAAGAAGAA
GAATCAGCACAAAATAATGGAGGCTAGGGCTGCTCGAGAGAAGAGCGAAT
TCCACAAGAAGCTGGAGGTTCGCACCGAAGAGGTAAGGCAACTGGAGGAG
GAAATAGCAACCCTGAAGACCGCGAACGACACTCTCGACCGGCGTCTAGT
AAGCAAGGACGAACTGGTGGACACCGTCGAGATGTGTCTGAACCATGTGG
CCGCGAAGCTCGAGGTCGCACGGGGAGAGATAGACGCCAAGGGTGTCGAG
ATTACCGGACTTAACCGACGTCTTGAGCTGTGCGCCGATGAGCGCAAGGC
GAGCTTGATCCAGCTCGAAGAGGCCCAGGCGGCGACCGACGGAGGGAAAG
AGGACCTTGAGCTCAAGACCAAGCTGAAGGAGGCACTCGCCCTGGTTGAG
ATGCACGAGCGGATCGGCACGAGGATGAGAGCGACGATCATGCGCCTGGA
CGGCGAGCTGGCGAGCCTCCAGCGCCTGCCGACGATGGACCTTCGGCTGC
CTGCTTCGTCCGCACTGCCCCACGTCCGTGGCAACACGGCCTCCATCAGC
AATAGCGGGGCAAGCAACGTCACCCGGAGCCACGACAGCAGCGCGGGGAC
GCTATCCGTCACACTGAGCGGCAGTGGAACGGTCAATACCTGCAGCAGGG
ACCCCAGCAGCAGCCCCAGCAACAGCGTCAGCATCGACAACAGCGGCGAC
ATGAGTGACAGCGACAGTATCAGCAGCATGAGCGACAGCGTAGGCGAGGT
CGTGAGCGACAGTGGGAGCGTGCAGCAGCCGATGGTTACCGTTCCCCCGC
TCATCCCCTCACCGCTGGCACTGGCGGTAGCCATAGCTCAAGGTCATCTG
CTGAGCCGACCACCGTATACCGCGAGGCCCCCCACGACAGGCCGCCGAAA
CGGCTCCGGGGTGGAGGAGGAGACCAAGGGGGCACGATAG
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