mRNA_P-littoralis_Contig194.100.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.100.2
Unique NamemRNA_P-littoralis_Contig194.100.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.100.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:276176..277773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size452
Hectar predicted targeting categoryother localisation
Exons2
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.4585912-CDS-P-littoralis_Contig194:276175..2765211680789931.4585912-CDS-P-littoralis_Contig194:276175..276521Pylaiella littoralis U1_48CDSP-littoralis_Contig194 276176..276521 -
1680789931.4706433-CDS-P-littoralis_Contig194:277669..2777521680789931.4706433-CDS-P-littoralis_Contig194:277669..277752Pylaiella littoralis U1_48CDSP-littoralis_Contig194 277670..277752 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.482117-UTR-P-littoralis_Contig194:277752..2777731680789931.482117-UTR-P-littoralis_Contig194:277752..277773Pylaiella littoralis U1_48UTRP-littoralis_Contig194 277753..277773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.100.2prot_P-littoralis_Contig194.100.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 276176..277752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.100.2

>prot_P-littoralis_Contig194.100.2 ID=prot_P-littoralis_Contig194.100.2|Name=mRNA_P-littoralis_Contig194.100.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MVGAAAGSADGLGGFVGGGHALCRARSRSANGLDAGPNAPLPPPRQQQQQ
QRRARFSSRERALILEFVQEASSPAVAAAAAPAMGATTARGAGTGAGTGG
GAGISSSAHASGTETGAESSDGGGSWFASVHNRAGSSRWVESF
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mRNA from alignment at P-littoralis_Contig194:276176..277773-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.100.2 ID=mRNA_P-littoralis_Contig194.100.2|Name=mRNA_P-littoralis_Contig194.100.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1598bp|location=Sequence derived from alignment at P-littoralis_Contig194:276176..277773- (Pylaiella littoralis U1_48)
GGCGGCAGCGGCGGTGCTTGTATGGTGGGCGCCGCGGCCGGGTCCGCGGA
CGGCCTTGGGGGTTTTGTCGGCGGCGGGCACGCCTTGTGCCGCGCCCGTT
CAAGGTTTGTGTATGTGTGTTGCACTCGCACTGGGTTGTCTGGTTGTTTG
GTTGGCTGTCTGGCTGGCTGCGCTCGCTGACAAAGAATACGGTTTATTTA
TTTGTTTTTTCTTTTCTTTTCTTTTTTCTCCGTGTTTGTTGACTTAATTC
ATTTGCTTGTTAACCAGACCTGCATTTTTTTATGTAAGTGCATTTTACTG
TTCTCGCCATCGTTTTCGTTTTTTATTCTTCATTTTTGCACGTGAACTGA
GGTAAAAAAAGAATATGATGGCGAGCAGAGTCACACAGAGGTAAACTTCC
AAGCGTCACTTTGCCCTACGTGCTGGTGGTCCACACTACCAAAGACCAGG
TCGGTGACCGAGCTTCTCCGAGACTCTCACAACACAACACATCCAAATAA
AACAAGGGAAAGAGACGTCGAAAGTAAAACAAGAGAGAGGGGGGGGGTAA
CCTCCTCCGATGTGATCGACGTTAGGCGGTGGCAAAAACGAAAAAATCAG
AAATTCAGATCGGCCGCCAGACAAAAGTCATTTGCTTCCATATACCCGTG
CCCTGCTCCCCGCCTTTGATTTTCATCGACTGCACCGCTACCGCTGCACA
TTCGGTACTGCACGTGGGTATGATATGTGCGCTTTGACATGTACGATTTT
TCTGGAAAGTTCGCGAGGGGTCTGGCTGTTTGTGTTTCGCAGGCGTCGCA
GTCTCGGCCTTGCCGCTAAGCCGCGGCGTGGGAATGTCCTTGTTGCTTGG
TCACGTCTGTCTGTGTATTGTTTTTTATTTTTGCTACTAGCACAGCAGTA
TGATATGTGCGTCTTTCGTGACCACGGGCTGGATGGACTTGGACGGTAAG
CTGATGTGAGAATCAACAACAACAACAACAACAACAACAACAGCAACAGC
AACAACAGCAACAGCAACAACAGCAACAGCAACAACAACAGCAACAGCAA
CAACAACAACAACAACAACAACAACAATGAAAGACCGAAGTTCTCGGAGA
ATGTGCACAACCCCCCTCCCCCGCTCATGCGTCGCCGCTGCTGCTGATGG
AAACCTTTCCACCCCCTCCCTCTCCCGTGCCGTCCATCCGACCTCCACCC
TTACAAATGTCAAACAAACAACCACCACAACCAAACTTCTGTGTAAACGC
AGGTCGGCAAATGGCCTAGACGCGGGCCCCAACGCGCCGCTACCGCCGCC
GCGGCAGCAACAGCAGCAGCAGCGCCGCGCACGGTTCTCCAGCCGTGAGC
GGGCCCTGATCCTGGAGTTCGTCCAAGAAGCGTCGAGTCCTGCAGTAGCA
GCAGCAGCAGCACCGGCGATGGGGGCGACCACCGCCAGGGGAGCAGGAAC
AGGAGCAGGAACCGGAGGAGGGGCCGGGATATCTTCATCCGCGCACGCTT
CGGGGACTGAAACGGGGGCCGAGTCTTCCGACGGCGGGGGCAGCTGGTTC
GCGAGCGTACACAATCGCGCCGGCAGCTCTCGCTGGGTGGAAAGCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:276176..277773-

>mRNA_P-littoralis_Contig194.100.2 ID=mRNA_P-littoralis_Contig194.100.2|Name=mRNA_P-littoralis_Contig194.100.2|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig194:276176..277773- (Pylaiella littoralis U1_48)
ATGGTGGGCGCCGCGGCCGGGTCCGCGGACGGCCTTGGGGGTTTTGTCGG
CGGCGGGCACGCCTTGTGCCGCGCCCGTTCAAGGTCGGCAAATGGCCTAG
ACGCGGGCCCCAACGCGCCGCTACCGCCGCCGCGGCAGCAACAGCAGCAG
CAGCGCCGCGCACGGTTCTCCAGCCGTGAGCGGGCCCTGATCCTGGAGTT
CGTCCAAGAAGCGTCGAGTCCTGCAGTAGCAGCAGCAGCAGCACCGGCGA
TGGGGGCGACCACCGCCAGGGGAGCAGGAACAGGAGCAGGAACCGGAGGA
GGGGCCGGGATATCTTCATCCGCGCACGCTTCGGGGACTGAAACGGGGGC
CGAGTCTTCCGACGGCGGGGGCAGCTGGTTCGCGAGCGTACACAATCGCG
CCGGCAGCTCTCGCTGGGTGGAAAGCTTC
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