mRNA_P-littoralis_Contig194.98.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.98.4
Unique NamemRNA_P-littoralis_Contig194.98.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.98.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:274419..275997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1398
Hectar predicted targeting categoryother localisation
Exons2
Cds size1164
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.3935978-UTR-P-littoralis_Contig194:274418..2746411680789931.3935978-UTR-P-littoralis_Contig194:274418..274641Pylaiella littoralis U1_48UTRP-littoralis_Contig194 274419..274641 -
1680789931.4239817-UTR-P-littoralis_Contig194:275986..2759971680789931.4239817-UTR-P-littoralis_Contig194:275986..275997Pylaiella littoralis U1_48UTRP-littoralis_Contig194 275987..275997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.404288-CDS-P-littoralis_Contig194:274641..2755211680789931.404288-CDS-P-littoralis_Contig194:274641..275521Pylaiella littoralis U1_48CDSP-littoralis_Contig194 274642..275521 -
1680789931.4136448-CDS-P-littoralis_Contig194:275702..2759861680789931.4136448-CDS-P-littoralis_Contig194:275702..275986Pylaiella littoralis U1_48CDSP-littoralis_Contig194 275703..275986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.98.4prot_P-littoralis_Contig194.98.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 274642..275986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.98.4

>prot_P-littoralis_Contig194.98.4 ID=prot_P-littoralis_Contig194.98.4|Name=mRNA_P-littoralis_Contig194.98.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=388bp
MVGGSNSYPSGEGLLGVPAPGIGRGVPMSLAFWHLVGGCADGRAGGGGGI
GAVASAVEKDTQHEQRARATELLQQQQQQQHGSLRSGVDPYKTKKRAPAY
TVAEPSSGSTLPRAMAVKEDGNAAAAAASAASAGGGSGEQRASINKAWEL
WRKEEAMPPMPVHRKSSRINEFTLLKGKGGGGGGGGGGEGGVVSPSGSFS
PLVIVSTEGILEGEGGAGVPAAASGAPERAGGATAAAAPAATAPAAAAAA
TSAAVATAAAAAAATLNVVPRKAAFAGNKRRENGASGRSTGRSTGQAAAL
SGPVYASASAAAAAVAAEPPAEEALKPLRVNIKTPGEASPRPAEAVETAG
PAEAANISAPADREKLGEGIDDDAGIAALEVRVWHRR*
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mRNA from alignment at P-littoralis_Contig194:274419..275997-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.98.4 ID=mRNA_P-littoralis_Contig194.98.4|Name=mRNA_P-littoralis_Contig194.98.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=1579bp|location=Sequence derived from alignment at P-littoralis_Contig194:274419..275997- (Pylaiella littoralis U1_48)
GGGGAGGTGGAATGGTGGGGGGCAGCAACTCGTATCCGTCTGGAGAGGGT
TTGCTCGGGGTCCCTGCACCGGGAATCGGTCGGGGTGTCCCGATGTCGTT
GGCGTTTTGGCACCTGGTTGGGGGGTGCGCCGACGGAAGAGCAGGAGGAG
GAGGAGGTATAGGGGCTGTGGCTTCGGCGGTAGAGAAGGATACGCAGCAT
GAACAACGCGCGAGAGCGACCGAGCTGTTGCAGCAGCAGCAGCAGCAGCA
GCATGGTTCCCTGCGCAGCGGCGTCGATCCCTACAAAACAAAAAAGTGAG
TTGTTGTTTTTTCCTTTTTCATCGTATTCTTCCTATGTAAATGATTTGGA
TGTGGCCGGCAGGTGCGCACAGCAGTGTATACACATCGTACGCCAGCGTA
TTTCGTGATTTCGCCGATTCAAGCCCCCTCCGCTCTTGTGGCTCCGTTCT
GCCTGCGCTTACAACTTCAAAAATAGGCGCGCCCCGGCATATACGGTAGC
AGAACCCTCCTCGGGCTCTACCCTGCCTCGAGCCATGGCGGTGAAGGAGG
ATGGCAATGCTGCTGCCGCGGCTGCCTCTGCCGCCTCTGCCGGCGGCGGG
TCTGGAGAACAGCGCGCGTCCATCAACAAAGCTTGGGAGCTATGGCGCAA
GGAAGAGGCGATGCCTCCGATGCCAGTCCACAGGAAGAGCTCGCGGATCA
ACGAGTTCACCCTGCTCAAAGGCAAGGGTGGCGGCGGAGGCGGTGGCGGT
GGGGGTGAGGGTGGCGTCGTCAGCCCGTCTGGAAGCTTCTCTCCCCTCGT
GATCGTGTCCACCGAGGGGATTCTTGAGGGAGAAGGTGGCGCTGGTGTGC
CGGCGGCGGCCAGTGGCGCTCCTGAAAGGGCAGGTGGTGCCACCGCTGCT
GCTGCTCCTGCTGCTACTGCTCCTGCTGCGGCTGCTGCTGCTACTTCTGC
GGCCGTTGCCACTGCTGCTGCTGCTGCTGCTGCGACTCTCAACGTTGTTC
CCCGAAAAGCCGCTTTCGCTGGTAATAAACGCAGAGAAAATGGAGCAAGT
GGCCGCTCCACCGGCCGCTCCACCGGCCAAGCGGCGGCTCTCTCCGGCCC
GGTGTACGCTAGCGCTTCGGCTGCGGCGGCAGCGGTAGCGGCGGAACCGC
CAGCCGAGGAGGCACTGAAACCCCTGAGGGTTAACATCAAAACACCTGGC
GAAGCATCGCCGAGGCCTGCGGAGGCGGTGGAGACAGCGGGGCCTGCGGA
GGCGGCAAATATTTCGGCTCCGGCTGACCGGGAGAAGCTTGGAGAGGGGA
TTGATGACGACGCCGGCATCGCTGCCCTTGAGGTGAGGGTCTGGCACAGG
AGATAGGGTTGTAAGAAGTTGAGCGTTATTGTTGTTGTTGGTGTCGGTGT
TGGTGTTGGTGATTGTTGGTGTTGTTGGTGTTGTTGGTGTTGTTGGTGTT
GATTCTCACACGAACTTCATCTCCAAAGTCTAGCCCGTGGTCAGAAACCA
GGCAGGCAAAAACTTGCCTCAGAAGAAAAGCCGACATTCAGCTCGCGAGA
TGTGGCGGTGTGGACGGGCAGTGGCTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:274419..275997-

>mRNA_P-littoralis_Contig194.98.4 ID=mRNA_P-littoralis_Contig194.98.4|Name=mRNA_P-littoralis_Contig194.98.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1164bp|location=Sequence derived from alignment at P-littoralis_Contig194:274419..275997- (Pylaiella littoralis U1_48)
ATGGTGGGGGGCAGCAACTCGTATCCGTCTGGAGAGGGTTTGCTCGGGGT
CCCTGCACCGGGAATCGGTCGGGGTGTCCCGATGTCGTTGGCGTTTTGGC
ACCTGGTTGGGGGGTGCGCCGACGGAAGAGCAGGAGGAGGAGGAGGTATA
GGGGCTGTGGCTTCGGCGGTAGAGAAGGATACGCAGCATGAACAACGCGC
GAGAGCGACCGAGCTGTTGCAGCAGCAGCAGCAGCAGCAGCATGGTTCCC
TGCGCAGCGGCGTCGATCCCTACAAAACAAAAAAGCGCGCCCCGGCATAT
ACGGTAGCAGAACCCTCCTCGGGCTCTACCCTGCCTCGAGCCATGGCGGT
GAAGGAGGATGGCAATGCTGCTGCCGCGGCTGCCTCTGCCGCCTCTGCCG
GCGGCGGGTCTGGAGAACAGCGCGCGTCCATCAACAAAGCTTGGGAGCTA
TGGCGCAAGGAAGAGGCGATGCCTCCGATGCCAGTCCACAGGAAGAGCTC
GCGGATCAACGAGTTCACCCTGCTCAAAGGCAAGGGTGGCGGCGGAGGCG
GTGGCGGTGGGGGTGAGGGTGGCGTCGTCAGCCCGTCTGGAAGCTTCTCT
CCCCTCGTGATCGTGTCCACCGAGGGGATTCTTGAGGGAGAAGGTGGCGC
TGGTGTGCCGGCGGCGGCCAGTGGCGCTCCTGAAAGGGCAGGTGGTGCCA
CCGCTGCTGCTGCTCCTGCTGCTACTGCTCCTGCTGCGGCTGCTGCTGCT
ACTTCTGCGGCCGTTGCCACTGCTGCTGCTGCTGCTGCTGCGACTCTCAA
CGTTGTTCCCCGAAAAGCCGCTTTCGCTGGTAATAAACGCAGAGAAAATG
GAGCAAGTGGCCGCTCCACCGGCCGCTCCACCGGCCAAGCGGCGGCTCTC
TCCGGCCCGGTGTACGCTAGCGCTTCGGCTGCGGCGGCAGCGGTAGCGGC
GGAACCGCCAGCCGAGGAGGCACTGAAACCCCTGAGGGTTAACATCAAAA
CACCTGGCGAAGCATCGCCGAGGCCTGCGGAGGCGGTGGAGACAGCGGGG
CCTGCGGAGGCGGCAAATATTTCGGCTCCGGCTGACCGGGAGAAGCTTGG
AGAGGGGATTGATGACGACGCCGGCATCGCTGCCCTTGAGGTGAGGGTCT
GGCACAGGAGATAG
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