mRNA_P-littoralis_Contig194.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.18.1
Unique NamemRNA_P-littoralis_Contig194.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:29286..32096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1138
Hectar predicted targeting categoryother localisation
Exons2
Cds size1137
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.3554049-CDS-P-littoralis_Contig194:29285..294111680789931.3554049-CDS-P-littoralis_Contig194:29285..29411Pylaiella littoralis U1_48CDSP-littoralis_Contig194 29286..29411 +
1680789931.3644867-CDS-P-littoralis_Contig194:31085..320961680789931.3644867-CDS-P-littoralis_Contig194:31085..32096Pylaiella littoralis U1_48CDSP-littoralis_Contig194 31086..32096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.18.1prot_P-littoralis_Contig194.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 29286..32096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.18.1

>prot_P-littoralis_Contig194.18.1 ID=prot_P-littoralis_Contig194.18.1|Name=mRNA_P-littoralis_Contig194.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=379bp
GKGANQTRTWYSTGTGAQHLSAKEGRREVKHLQRCTTLELNRITCHQKRC
QQEQQQRQHQQRGQKARGRRGQQYQFAGKKQNLLEQTTMATPKSGRKRSA
VSAAAAAAAAAAAATSATARATASSATSGAGNSSSSSGSSNARATLAGSP
RGSSLLTPEPAQKRRGVSCGGPNSGTNGGASGATPTSAFTPGTDTAHLLL
QLRRDWVQHQGPPKQQQEQQQEEEQRGPSTSSTTPPKRHKSGGGSGSGSG
MSVPTGGTTLSEEAADLIDSCSYAVGPSSNGGNSSSDSSFSDQKSRPATA
PGTAAAGRRKGGGERAAPRGASSSRRDERRRPAAAGACNSTRRGRGSKAN
RSSAKKPAVASAVASAVTATATAEATAAA
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mRNA from alignment at P-littoralis_Contig194:29286..32096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.18.1 ID=mRNA_P-littoralis_Contig194.18.1|Name=mRNA_P-littoralis_Contig194.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2811bp|location=Sequence derived from alignment at P-littoralis_Contig194:29286..32096+ (Pylaiella littoralis U1_48)
GGCAAAGGAGCGAATCAAACGCGTACCTGGTACAGCACTGGTACTGGTGC
ACAACACTTATCGGCTAAGGAGGGCAGAAGAGAAGTCAAGCACCTCCAGC
GCTGCACTACCCTCGAGTTAAATCGGGTGAGATTTCATCATCATAATTAC
GCGCATGGACCTCGCTTGTTGGCGTAGCTGTGCTCCGATTGCGGTCCTAT
TGCGTTTCACATTTGAATGTTGTTGTGTGTTGTTTGTTGACCAACGGTCA
ACCGCACAGGCTGTGTTCTTCAGGTGTGATGGTGTAGTTGGTCATCTCCG
AGTTCATGTGTTGCCTCGCAGTCAAGTCACCTTTTGGGGTGCTTTGTGTG
GCCGCAGCTCTCGGGTGCAACGGCCTCAGCTGGCAGGGCAGCGCACATTA
TAGGTGCTTGTCAACGTGACAGCGATATGGGGTCGTGCGCGCAGACAGAC
GTATCGGACGTGCTCTGTCCGATTTTTAAAAAAGTGTCACTCGTTTCAAT
TTTTCAATGAAATGATCCAGCAGCAGTGGGGAGTATGATACTCCGAGTAG
TATTTTTGAGATTGTTCGTCCGACGGCGGGGGGTTGAGCAGGTACCAGGT
ACTGCTGTACTTTACGGTAATCGGAATTCATGGCTCATTTGGTGTGTTTT
TATTCTTTAGGCGGTGATGATGCGCGTGTGGTGTGGTTGGTGTATTGCCT
CTGCTGCTGCGGTTCGGACTCGGCACACACTTGATATTTTGTACGTCAGC
TGCTGTCGAGGAGCGACCAATTTGCTCTTGTGGATGTGACCGCCGCGATG
AGCTTCCTGCGGTGACTGATTTCAAACAGAAAACATACCGATTCAAAGGA
AAGCACTCTAGTACAAATCAGTCTGTACGATATCATACATATCACAGAGA
GCAAAAAAAAATGAAAAATGGCTCCGAAGACGGGTATTCCAACTCGGGCT
CCTGCTCGGGCTCTCTCGGGCAAACCGATTTCCGGATCACGCACGCTGTG
GGATTATGTCACACCTGCTGTACATACCAGCTGCATGGTAGCATGTGCTG
CTGTCTTCTGTCCTGTCCCTCGGCCGCAGGGCGGCTCACCATATCACATT
CCCGTCGCCCCGGTGGACTAGTGGTCCCTCGTTAACCACTAGATGCAGAG
GAACGGGGGTTCGATTCCCGGTGAATGTGTTCCTTTGCTACTTTGAAAGC
GGCTATGCTGTTAGTAAAATCAGATTCGGCTTCGCCGACGAGGGTAGGGA
CCGCGGACCCCTGCTCGCGAGAAAAAATCTCACGCATGTACCGCAGAAGG
AAGGTGGGGGTAACTCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGT
CGATGGGCCTAGCCTGTAGTGTGCAGACTAGTGTGCCAGAGAACATGGGA
TGACAACACACATTCCCGCTGCTGTCACATATTTGTCTTCGGCACTCTCG
CGCATCCGAACATCAACGTGTGTACGTTTCTACTTCGAGTATACTTCGAA
GTATGATATCATACCATACCACACACGGAAAAGACGCCGTTACCTTCTTT
TTTTTAAACTTACAGACACATCAATGTGTTCGTCTCTCCAGACGAACAAG
TTGCACACAGAACAAGAACACACAGACACACACAGACACACACACCAAAA
CTCTACTTCGAAGTAAAATTTTTTAATTTTTTAATTTTTTAATTTTTTAA
TTTTTTAATTTTTAATTTTTGTAGACGAGCACAAGGTACCACTGACGACG
ACGACGCTCTTGCCGTACCCACTGCTGTGCACATATACAACCGTTTGCAG
ATCACCTGCCACCAGAAGCGCTGTCAGCAAGAGCAACAACAACGACAACA
TCAACAACGCGGCCAAAAAGCGAGAGGGAGGAGAGGACAGCAGTACCAGT
TTGCAGGAAAAAAACAAAATCTACTCGAGCAAACGACCATGGCAACCCCA
AAGTCGGGAAGAAAACGGTCGGCGGTATCTGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCCGCCGCCACAAGTGCCACCGCCCGTGCTACTGCCTCGAGCG
CAACGTCCGGCGCAGGGAATAGCAGCAGCAGTAGCGGTAGCAGCAACGCA
CGAGCAACCTTGGCCGGGTCACCTCGAGGTTCCTCGTTGCTCACTCCCGA
ACCTGCTCAAAAGAGAAGAGGCGTAAGTTGCGGTGGTCCCAACAGCGGTA
CCAACGGCGGCGCCAGCGGCGCTACTCCCACAAGTGCGTTTACTCCGGGA
ACCGACACGGCGCACTTGTTGCTTCAGCTTCGAAGGGACTGGGTGCAACA
CCAAGGGCCGCCAAAGCAACAGCAGGAGCAGCAGCAGGAGGAGGAGCAGA
GGGGTCCTTCCACCAGCAGTACAACACCGCCGAAGCGGCATAAGAGTGGC
GGCGGTAGCGGCAGCGGCAGCGGGATGAGCGTACCCACAGGAGGAACAAC
TCTTTCTGAGGAAGCGGCAGATCTCATCGATAGCTGCTCCTATGCAGTGG
GGCCGTCCAGCAACGGCGGCAACAGTAGCAGCGACTCCAGCTTCTCCGAC
CAAAAGAGTAGGCCGGCAACAGCACCCGGAACTGCGGCTGCGGGGAGGAG
GAAGGGCGGGGGCGAAAGAGCAGCACCGCGGGGGGCATCAAGCAGCAGGC
GGGATGAGCGGCGGCGCCCCGCCGCTGCAGGGGCGTGCAACAGCACTAGA
CGAGGGCGTGGCAGCAAAGCAAACCGCAGTAGCGCCAAAAAGCCGGCGGT
AGCGTCGGCGGTAGCGTCAGCGGTGACCGCAACAGCGACAGCTGAAGCGA
CCGCGGCAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:29286..32096+

>mRNA_P-littoralis_Contig194.18.1 ID=mRNA_P-littoralis_Contig194.18.1|Name=mRNA_P-littoralis_Contig194.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1137bp|location=Sequence derived from alignment at P-littoralis_Contig194:29286..32096+ (Pylaiella littoralis U1_48)
GGCAAAGGAGCGAATCAAACGCGTACCTGGTACAGCACTGGTACTGGTGC
ACAACACTTATCGGCTAAGGAGGGCAGAAGAGAAGTCAAGCACCTCCAGC
GCTGCACTACCCTCGAGTTAAATCGGATCACCTGCCACCAGAAGCGCTGT
CAGCAAGAGCAACAACAACGACAACATCAACAACGCGGCCAAAAAGCGAG
AGGGAGGAGAGGACAGCAGTACCAGTTTGCAGGAAAAAAACAAAATCTAC
TCGAGCAAACGACCATGGCAACCCCAAAGTCGGGAAGAAAACGGTCGGCG
GTATCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACAAGTGC
CACCGCCCGTGCTACTGCCTCGAGCGCAACGTCCGGCGCAGGGAATAGCA
GCAGCAGTAGCGGTAGCAGCAACGCACGAGCAACCTTGGCCGGGTCACCT
CGAGGTTCCTCGTTGCTCACTCCCGAACCTGCTCAAAAGAGAAGAGGCGT
AAGTTGCGGTGGTCCCAACAGCGGTACCAACGGCGGCGCCAGCGGCGCTA
CTCCCACAAGTGCGTTTACTCCGGGAACCGACACGGCGCACTTGTTGCTT
CAGCTTCGAAGGGACTGGGTGCAACACCAAGGGCCGCCAAAGCAACAGCA
GGAGCAGCAGCAGGAGGAGGAGCAGAGGGGTCCTTCCACCAGCAGTACAA
CACCGCCGAAGCGGCATAAGAGTGGCGGCGGTAGCGGCAGCGGCAGCGGG
ATGAGCGTACCCACAGGAGGAACAACTCTTTCTGAGGAAGCGGCAGATCT
CATCGATAGCTGCTCCTATGCAGTGGGGCCGTCCAGCAACGGCGGCAACA
GTAGCAGCGACTCCAGCTTCTCCGACCAAAAGAGTAGGCCGGCAACAGCA
CCCGGAACTGCGGCTGCGGGGAGGAGGAAGGGCGGGGGCGAAAGAGCAGC
ACCGCGGGGGGCATCAAGCAGCAGGCGGGATGAGCGGCGGCGCCCCGCCG
CTGCAGGGGCGTGCAACAGCACTAGACGAGGGCGTGGCAGCAAAGCAAAC
CGCAGTAGCGCCAAAAAGCCGGCGGTAGCGTCGGCGGTAGCGTCAGCGGT
GACCGCAACAGCGACAGCTGAAGCGACCGCGGCAGCG
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