mRNA_P-littoralis_Contig193.102.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: A0A6H5K3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X8_9PHAE) HSP 1 Score: 555 bits (1430), Expect = 1.280e-181 Identity = 393/725 (54.21%), Postives = 433/725 (59.72%), Query Frame = 2
Query: 203 MATPGKDEGRQPAPNDNVPIARLISQ--DAQQGNDDDFTVVVGQRVSAPTTTASAYAV--RVPPDXXXXXXXXXXIPVASAQPSST--HPAPLLSHSSGTWTMPGTGTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMTTDSTGAPFPTMTHTGTQNVPGCGTASSTGGRRFGEDA------ARAA----EGGGXVXXXXXXXXXXXXXXKAGVSAVHDARYVADGGGGALVACGQGKSLYDVKGCLSSWVLLSGSGGNRSGELKGSVNEKNAAAXXXXXXXXXXXSGIEVPDHDASWALRSEANAAGDGGVTCSSCVPSAASGQGEGSRMLITGGKDSVLREWEVAEGRPRLVAKFSGHTDWISCCALIPSTTVGAPASTAASGGRDGSVRFWSKSAXXXXXXXXXXXXHCSRSEKMSMLRAAFASGSHSSSGRGSDAFSGEGVSPPLVGDGGWALASCLSSAHGSSEFVTCCASPSGHSGAIGGWVATGGTDWAVRLWDVAKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSGQPPRWIATGGGEGFLLVWDPRNWGSPVATLRGGEGENDAG------------GSSTADEEGTLRGGLAGARLRGESGRWEGETTGATMLNGVNCLAAGGAGA-GDWLFAAGETVVRSWRRRAGVWRGGAVLPGEGLGGVASLSVV 2290
MATP K ND VPIAR++ + D + DDD VV+GQ V AP A A + R PD S PSS+ + AP++ +S+G++++ GT TSG XXXXXX XXXXXXX A G P MTHTG NVPGCG ASSTGGRRFGE A AR A EGGG G + D YVADGG LVACGQGKS+Y VKGC+SSWVL+ G XXXXXXXXXXX + SWALRSE N AGDGGV CS+CVPS ASGQ G+ LITGGKDSVLREWE+AEGRPRLVA SGHTDWIS KSA XXXXXXXXXXX W+LAS +++AHGSSEFVT GWVATGGTDW+VRLWDV KSRELGRLSFMGHSH VRSLACSSDGNLLVSGGDD KVI+WSPQSRR +ATLK HA AVHGVAVDPGTHSG PRWIA+GGGEGFLLVWDPRN+GSPVATLRG A G S + EG+L+GGLAGAR RGESGRWEGET GATMLN VNCLAAGGAG+ GDWLFAAGETVVRSWRRR G+W GGA LPGEGLGG+ASLSV+
Sbjct: 1 MATPRKGGTGDEQGND-VPIARVVDRPDDDRSRRDDDVAVVIGQLVPAPALPAYAVSATSRATPDRTPWA-------ATSRGPSSSPSYAAPVMHNSTGSFSVAGTSTSGGXXXXXXRRGSSGGPVAGXXXXXXXVEEDSASAAAAGGEGTYMPVMTHTGMHNVPGCGIASSTGGRRFGEGAPATTAAARGAPFALEGGG------------------GSLPMKDGDYVADGGP-VLVACGQGKSMYKVKGCISSWVLV--------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSNQSWALRSEDNPAGDGGVMCSACVPSIASGQSSGT--LITGGKDSVLREWEIAEGRPRLVAHISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAAXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXXXWSLASSVATAHGSSEFVTXXXXXXXXXXXAAGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHQVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRVVATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAASAAAAPSSLSGAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETAGATMLNAVNCLAAGGAGSCGDWLFAAGETVVRSWRRRDGIWHGGAGLPGEGLGGIASLSVI 670
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: D7G1I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I6_ECTSI) HSP 1 Score: 543 bits (1399), Expect = 3.350e-179 Identity = 345/565 (61.06%), Postives = 370/565 (65.49%), Query Frame = 2
Query: 641 FPTMTHTGTQNVPGCGTASSTGGRRFGEDAARAAEGGGXVXXXXXXXXXXXXXXKAGVSAVHDARYVADGGGGALVACGQGKSLYDVKGCLSSWVLLSGSGGNRSGELKGSVNEKNAAAXXXXXXXXXXXSGIEVPDHDASWALRSEANAAGDGGVTCSSCVPSAASGQGEGSRMLITGGKDSVLREWEVAEGRPRLVAKFSGHTDWISCCALIPSTTVGAPASTAASGGRDGSVRFWSKS------AXXXXXXXXXXXXHCSRSEKMSMLRAAFASGSHSSSGRGSDAFSGEGVSPPLVGDGGWALASCLSSAHGSSEFVTCCASPSGHSGAIGGWVATGGTDWAVRLWDVAKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSGQPPRWIATGGGEGFLLVWDPRNWGSPVATLRGGEGEND--------AGGSSTADEEGTLRGGLAGARLRGESGRWEGETTGATMLNGVNCLAAGGAGAG-DWLFAAGETVVRSWRRRAGVWRGGAVLPGEGLGGVASLSVV 2290
P MTHTGT+NVPGCGTASSTGGRRFGE A X XXXXXXXXXXXXXX G + D YVADGG LVACGQGKS+Y+VKGC+SSWVL+ G GG E +V EK A XXXXXXXXXXX + S LITGGKDSVLREWE+AEGRPRLVA SGHTDWISCCAL+PS T G S A SGGRD SVRFW KS A ++ ++ S LRAAFASGS SSSGR + GGWVATGGTDW+VRLWDV K RELGRLSFMGHSHPVRSLACSSDG LLVSGGDD KVI+WSPQSRRPLATLK HA AVHGVAVDPGTHSG PRWIA+GGGEGFLLVWDPRN+GSPVA LRG D + G S A+ EG L+GGLAGAR RGESGRWEGETTGATMLN VNCLAAGGAG+G DWLFAAGETVVRSWRRR GVW GGA LPGEGLGG+ASLSV+
Sbjct: 1 MPVMTHTGTKNVPGCGTASSTGGRRFGEGAPATTX---XXXXXXXXXXXXXXXXXXGSLPMKDGDYVADGGP-VLVACGQGKSMYNVKGCMSSWVLVGGGGG----EQPDAVKEKMATXXXXXXXXXXXXXX--------------------------------------QASGTLITGGKDSVLREWEIAEGRPRLVAHISGHTDWISCCALVPSATAGVAPSVAVSGGRDASVRFWHKSDAAAAEAAAARAASDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGWVATGGTDWSVRLWDVVKFRELGRLSFMGHSHPVRSLACSSDGKLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVAILRGEVTAADPSSLSEAFSSGMSVAEREGGLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGEGLGGIASLSVI 519
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: A0A1Y2EVM9_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2EVM9_9BASI) HSP 1 Score: 75.9 bits (185), Expect = 4.410e-10 Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 2
Query: 1631 WVATGGTDWAVRLWDVAKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSGQPPRWIATGGGEGFLLVW 1948
WVA+GG D +RLWDV + R L V SLA + G+LL +G ++ V +W P+SRR +A L GH V GV + G+ +W+ + + + +W
Sbjct: 304 WVASGGFDRKIRLWDVGEGRASSVLELPSPPASVYSLATTPSGSLLAAGTPERVVRVWDPRSRRQVARLSGHTDNVRGVLI------GEEGKWLLSASSDSTVKLW 403
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: A0A524L7R5_THOAR (WD40 repeat domain-containing protein n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A524L7R5_THOAR) HSP 1 Score: 71.6 bits (174), Expect = 2.820e-9 Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 2
Query: 1625 GGWVATGGTDWAVRLWDVAKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGD-DQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSGQPPRWIATGGGEGFLLVWD 1951
G + +GG D +RLWD A +EL + F+GH PV ++ DG LVS D D V IW Q +++L ++ V VAV P R++ TGG +GF +WD
Sbjct: 33 GQMIISGGQDATIRLWDFASGKELHK--FVGHEGPVYNMVMMQDGKHLVSIADKDLAVKIWDIQKHELVSSLAPNSAHVTAVAVSP------DQRYLVTGGEDGFARIWD 134
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: A0A0K9QHY4_SPIOL (UDENN domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QHY4_SPIOL) HSP 1 Score: 71.2 bits (173), Expect = 1.100e-8 Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 2
Query: 1628 GWVATGGTDWAVRLWDVAKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSGQPPRWIATGGGEGFLLVWDPRNWGSPVATL 1984
G+ +G TD VR+WD + R + GH+ VR++ SSD +VSG DDQ ++IW PL LKGH + V + G I + +G + +WD RN GS +AT+
Sbjct: 856 GFFISGSTDCTVRIWDPNQRGSELRATLRGHTGAVRAI--SSDREKVVSGSDDQSIVIWDKHEFIPLEELKGHEAQISSVRLLSGDR-------ILSSSHDGTVKMWDARN-GSCIATV 964
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: A0A453EY40_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453EY40_AEGTS) HSP 1 Score: 68.9 bits (167), Expect = 1.200e-8 Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 2
Query: 1628 GWVATGGTDWAVRLWDVAKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSGQPPRWIATGGGEGFLLVWDPR 1957
G+ +G TD V++WD + R + GH+ VR++ SSD +VSGGDDQ VI+W Q+ + L LKGH V V + G + T +G + +WD R
Sbjct: 179 GFFISGSTDCTVKVWDPSLRGSELRATLRGHTRTVRAI--SSDRGKIVSGGDDQSVIVWDKQAFKLLEELKGHDAPVTSVRMLSGER-------VLTASHDGTVKMWDVR 279
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: A0A453EYD4_AEGTS (Uncharacterized protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A453EYD4_AEGTS) HSP 1 Score: 68.9 bits (167), Expect = 1.810e-8 Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 2
Query: 1628 GWVATGGTDWAVRLWDVAKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSGQPPRWIATGGGEGFLLVWDPR 1957
G+ +G TD V++WD + R + GH+ VR++ SSD +VSGGDDQ VI+W Q+ + L LKGH V V + G + T +G + +WD R
Sbjct: 151 GFFISGSTDCTVKVWDPSLRGSELRATLRGHTRTVRAI--SSDRGKIVSGGDDQSVIVWDKQAFKLLEELKGHDAPVTSVRMLSGER-------VLTASHDGTVKMWDVR 251
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: A0A5P1ET16_ASPOF (UDENN domain-containing protein (Fragment) n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ET16_ASPOF) HSP 1 Score: 70.1 bits (170), Expect = 2.540e-8 Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query: 1628 GWVATGGTDWAVRLWD-VAKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSGQPPRWIATGGGEGFLLVWDPR 1957
G+ +G TD +++WD + EL R + GH+ P+R++ SSD N +VSG DDQ VI+W Q+ + L LKGH V + + G + T +G + +WD R
Sbjct: 829 GFFISGSTDCTIKIWDPTLRGSEL-RATLKGHTRPIRAI--SSDRNKVVSGSDDQSVIVWDKQTSQLLEELKGHNAPVSCIRMLSGER-------VLTASHDGTVKMWDVR 929
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: UPI00098E28D6 (DENN domain and WD repeat-containing protein SCD1 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E28D6) HSP 1 Score: 70.1 bits (170), Expect = 2.700e-8 Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query: 1628 GWVATGGTDWAVRLWD-VAKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSGQPPRWIATGGGEGFLLVWDPR 1957
G+ +G TD +++WD + EL R + GH+ P+R++ SSD N +VSG DDQ VI+W Q+ + L LKGH V + + G + T +G + +WD R
Sbjct: 978 GFFISGSTDCTIKIWDPTLRGSEL-RATLKGHTRPIRAI--SSDRNKVVSGSDDQSVIVWDKQTSQLLEELKGHNAPVSCIRMLSGER-------VLTASHDGTVKMWDVR 1078
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Match: A0A1Y1USI4_9TREE (Putative WD-repeat protein n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1USI4_9TREE) HSP 1 Score: 69.7 bits (169), Expect = 3.070e-8 Identity = 38/129 (29.46%), Postives = 67/129 (51.94%), Query Frame = 2
Query: 1580 FVTCCASPSGHSGAIGGWVATGGTDWAVRLWDV---AKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDQKVIIWSPQSRRPLATLKGHAGAVHGVAVDPGTHSG--QPPRWIATGGGEGFLLVWD 1951
++T C +PS S + G A D ++RLW+ + + +++F GH + +L +DG+ L SGG + +++IW + L LKGH GA+ G+A P G Q P ++ + + + +WD
Sbjct: 64 YMTPCPTPSTSSSSSGKTFAVAYADGSIRLWEYESGTSTEAVEQVTFNGHKKTITTLTFDTDGSRLASGGSEGEIVIWDRVAEVGLFRLKGHRGAITGLAFIPHPSLGVSQHPGFLVSTAKDSTMRLWD 192 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig193.102.1 >prot_P-littoralis_Contig193.102.1 ID=prot_P-littoralis_Contig193.102.1|Name=mRNA_P-littoralis_Contig193.102.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=697bp MATPGKDEGRQPAPNDNVPIARLISQDAQQGNDDDFTVVVGQRVSAPTTTback to top mRNA from alignment at P-littoralis_Contig193:354435..364408- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig193.102.1 ID=mRNA_P-littoralis_Contig193.102.1|Name=mRNA_P-littoralis_Contig193.102.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9974bp|location=Sequence derived from alignment at P-littoralis_Contig193:354435..364408- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig193:354435..364408- >mRNA_P-littoralis_Contig193.102.1 ID=mRNA_P-littoralis_Contig193.102.1|Name=mRNA_P-littoralis_Contig193.102.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2091bp|location=Sequence derived from alignment at P-littoralis_Contig193:354435..364408- (Pylaiella littoralis U1_48)back to top |