mRNA_P-littoralis_Contig193.91.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.91.2
Unique NamemRNA_P-littoralis_Contig193.91.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.91.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:314212..314684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size281
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789930.4056683-CDS-P-littoralis_Contig193:314211..3143701680789930.4056683-CDS-P-littoralis_Contig193:314211..314370Pylaiella littoralis U1_48CDSP-littoralis_Contig193 314212..314370 -
1680789930.4150934-CDS-P-littoralis_Contig193:314562..3146731680789930.4150934-CDS-P-littoralis_Contig193:314562..314673Pylaiella littoralis U1_48CDSP-littoralis_Contig193 314563..314673 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789930.4259195-UTR-P-littoralis_Contig193:314673..3146841680789930.4259195-UTR-P-littoralis_Contig193:314673..314684Pylaiella littoralis U1_48UTRP-littoralis_Contig193 314674..314684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.91.2prot_P-littoralis_Contig193.91.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 314212..314673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.91.2

>prot_P-littoralis_Contig193.91.2 ID=prot_P-littoralis_Contig193.91.2|Name=mRNA_P-littoralis_Contig193.91.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRVWTPASIATLEFG
FLCWDEPNSLTSMLPVCLWLKHHKRSGKVKTGTSAQAFVW
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mRNA from alignment at P-littoralis_Contig193:314212..314684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.91.2 ID=mRNA_P-littoralis_Contig193.91.2|Name=mRNA_P-littoralis_Contig193.91.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=473bp|location=Sequence derived from alignment at P-littoralis_Contig193:314212..314684- (Pylaiella littoralis U1_48)
GGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGG
ACACGATCGCACACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGA
CCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCACCATAGAGTCCGGG
GTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAAC
ACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCCCGCGTTTCCTTCCC
CTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTCGTACCTCTGTGTCGT
CGTTTGTGATATAGGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTT
GGCTTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGT
GTGCCTCTGGCTCAAGCACCACAAGCGGTCAGGCAAGGTCAAGACAGGAA
CCTCCGCCCAAGCGTTCGTATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:314212..314684-

>mRNA_P-littoralis_Contig193.91.2 ID=mRNA_P-littoralis_Contig193.91.2|Name=mRNA_P-littoralis_Contig193.91.2|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig193:314212..314684- (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGAGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTTGGC
TTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGTGTG
CCTCTGGCTCAAGCACCACAAGCGGTCAGGCAAGGTCAAGACAGGAACCT
CCGCCCAAGCGTTCGTATGG
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