mRNA_P-littoralis_Contig193.84.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI) HSP 1 Score: 301 bits (771), Expect = 2.770e-94 Identity = 166/325 (51.08%), Postives = 210/325 (64.62%), Query Frame = 1
Query: 7 AAQDDAFGQIQRALCEGVVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQHFSGSAPAQSIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVIAGAPPAASTPTAEPSRGTPTLLGDEDAQKRGSSGAPGGTSGTTR-KNPRRTVSHDTNNYSRHGFSRLPDDGEDFSRWTVPQLREFLSVFRCLDNAGTSGLNKALLSTIAGDVVRMIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQRVNPLAQEGSRVWYRALQRTMDMGNLGKIWAVPAQEGVMWLGT 978
AA F + L ++ ESR ED+ AR +L+ H M VVW+P++ LQH SG+ + I TGTL +S +A R+A G+V P TG EW P + G A E + E A R P +S +R + P+ DTNNY HGFSRLP + ED+++WTVP+LREFLSVFRCLD AGTSG KALL+ +AGDVVR+IR CG+LDTNLAFRHPV D +SFE+KE +MPDLPA RI EWS +RR+LPEISK+ I +F+ VN LA EGSR+WYR+LQR +DMGNL + WAVPA G+MW+GT
Sbjct: 189 AASLQPFDAVVGDLASRLLVESREEDTPAARREFEIRLRACHTMVTQPVVWDPLSGELQHLSGAPTREEITRHTGTLELSPLASRVARGDVCPLTGREWDPPL-GTAQAKGQAVGEDAGRQKKRATPETASTR----PPNASSRASRARGPQ-----DTNNYREHGFSRLPGETEDYTKWTVPKLREFLSVFRCLDTAGTSGFKKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEARLMPDLPATGLRIKEWSAMRRYLPEISKAVISRFLGEVNKLAGEGSRLWYRSLQRVLDMGNLSRFWAVPAAGGIMWIGT 503
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE) HSP 1 Score: 306 bits (785), Expect = 7.690e-94 Identity = 166/319 (52.04%), Postives = 214/319 (67.08%), Query Frame = 1
Query: 25 FGQIQRALCEGVVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQHFSGSAPAQSIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVIAGAPPAASTPTAEPSRGTPTLLGDEDAQKRGSSGAPGGTSGTTR-KNPRRTVSHDTNNYSRHGFSRLPDDGEDFSRWTVPQLREFLSVFRCLDNAGTSGLNKALLSTIAGDVVRMIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQRVNPLAQEGSRVWYRALQRTMDMGNLGKIWAVPAQEGVMWLGT 978
F + L ++ ES+ ED+ A V +L+ H MF VVWNP++ LQH SG+ ++ I TGTL +S +A +A G+V P TG EW P + G A E + + E A R P +S T+R + P+ +TNNY HGFSRLP + ED+++WTVP+LREFL+VFRCLDNAGTSG NKALL+ +AGDVVR+IR CG+LDTNLAFRHPV D +SFE+KE +MPDLPA RI EWS +RRHLPEISK+ IL+F++ VN LA EGSR+WYR+LQR +DMGNL + WAV A G+MW+GT
Sbjct: 508 FDAVVGDLASRLLVESKEEDTPAAWREVEIRLRACHTMFTQPVVWNPLSGELQHLSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGGEWDPPL-GTAQAKGQAAGEDASRPKKKVTPEIASSR----PPNASSRTSRARGPQ-----ETNNYRAHGFSRLPGETEDYTKWTVPKLREFLTVFRCLDNAGTSGFNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEARLMPDLPATGLRIKEWSAMRRHLPEISKAVILRFMREVNKLAGEGSRLWYRSLQRVLDMGNLSRFWAVSAAGGIMWIGT 816
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: D7G3Y3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y3_ECTSI) HSP 1 Score: 278 bits (711), Expect = 1.690e-89 Identity = 149/285 (52.28%), Postives = 192/285 (67.37%), Query Frame = 1
Query: 136 MFRHAVVWNPIADTLQHFSGSAPAQSIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVIAGAPPAASTPTAEPSRGTPTLLGDEDAQKRGSSGAPGGT-----SGTTRKNPRRTVSHDTNNYSRHGFSRLPDDGEDFSRWTVPQLREFLSVFRCLDNAGTSGLNKALLSTIAGDVVRMIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQRVNPLAQEGSRVWYRALQRTMDMGNLGKIWAVPAQEGVMWLG 975
MF +AVVW+P+ +TL+HFSG+A + +I DTGTL SSVA IA GEVSP+TG W APP T A+ R G + S + K R+ V+HDTNNY +HGFSRLP EDF++WTV QLREFLSVFRCLD+AG S K L +AG +V MI+KCGLL++N AFRHPV D +SF+DKERM MP+LP RI + +++HLPE+SKS ILQF+++VNP++ EGSRVWYR +Q+ DMGNL ++W VPA+ G+M+LG
Sbjct: 1 MFHNAVVWDPLKNTLRHFSGAASSLAITNDTGTLEFSSVASGIASGEVSPTTGQVW------APPLLETRIAQEFRRATRRPGSQPPXXXXXXXXXXXXXXXXXSTSRNKRSRKAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLVELAGQIVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMAMPELPGPRSRISGFEHLQQHLPEMSKSVILQFLRQVNPISGEGSRVWYRGMQKVTDMGNLNRLWGVPAKNGLMYLG 279
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE) HSP 1 Score: 294 bits (752), Expect = 2.170e-89 Identity = 160/310 (51.61%), Postives = 207/310 (66.77%), Query Frame = 1
Query: 58 VVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQHFSGSAPAQSIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVIAGAPPAASTPTAEPSRGTPTLLGDEDAQKRGSSGAPGGTSGTT----RKNPRRTVSHDTNNYSRHGFSRLPDDGEDFSRWTVPQLREFLSVFRCLDNAGTSGLNKALLSTIAGDVVRMIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQRVNPLAQEGSRVWYRALQRTMDMGNLGKIWAVPAQEGVMWLG 975
VV++S+ E++ A KL+ AHNMF +AVVW+P+ +TL+HFSG+A + +I DTGTL SSVA IA GEVSP+TG W APP T A+ R G + K R V+HDTNNY +HGFSRLP EDF++WTV QLREFLSVFRCLD+AG S K L+ +AG VV MI+KCGLL++N AFRHPV D +SF+DKERM+MP+LP RI + +++HLPE+SKS ILQF+ +VNP++ EGSRVWYR +Q+ MDMGNL ++W VPA+ G+M+LG
Sbjct: 314 VVQDSKEEETPAALEEAEEKLRRAHNMFHNAVVWDPLKNTLRHFSGAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVW------APPLLETRIAQELRRATRRPGSQPPXXXXXXXXXXXXXXXXXXXXNKRSRNAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLAELAGQVVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMVMPELPGPRSRISGFEHLQQHLPEMSKSVILQFLGQVNPISGEGSRVWYRGMQKVMDMGNLNRLWGVPAKNGLMYLG 617
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI) HSP 1 Score: 285 bits (730), Expect = 5.870e-89 Identity = 148/281 (52.67%), Postives = 189/281 (67.26%), Query Frame = 1
Query: 136 MFRHAVVWNPIADTLQHFSGSAPAQSIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVIAGAPPAASTPTAEPSRGTPTLLGDEDAQKRGSSGAPGGTSGTTRKNPRRTVSHDTNNYSRHGFSRLPDDGEDFSRWTVPQLREFLSVFRCLDNAGTSGLNKALLSTIAGDVVRMIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQRVNPLAQEGSRVWYRALQRTMDMGNLGKIWAVPAQEGVMWLGT 978
+ R VVWNP++ LQH SG++ + I TGTL +S +A R+A G++ TG EW P + A A+ R E A R S+ + + R DTNNY HGFSRLP + ED+++WTVP+LREFLSVFRCLDN GTSGLNKALL+ +AGDVVR+IR CG+LDTNLAFRHP D +SFE+KE +MPDLPA RI EWS +RR+LPEISK+ IL+F++ VN LA +GSR+WYR+LQR +DMGNL + W V A +MW+GT
Sbjct: 257 LLRGPVVWNPLSGELQHLSGASTREEITRHTGTLELSPLASRVARGDICLLTGREWDPPLGTAQGKGQAAGADAGRQKKKAT-PETASSRPSN--------ASSRASRARGPQDTNNYREHGFSRLPGETEDYTKWTVPKLREFLSVFRCLDNTGTSGLNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPFPDLSSFEEKEARLMPDLPATGLRIKEWSAMRRYLPEISKAVILRFMREVNKLAGKGSRLWYRSLQRVLDMGNLSRFWTVQAAGSIMWIGT 528
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI) HSP 1 Score: 279 bits (714), Expect = 3.380e-88 Identity = 157/309 (50.81%), Postives = 205/309 (66.34%), Query Frame = 1
Query: 58 VVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQHFSGSAPAQSIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVIAGAPPAASTPTAEPSRGTPTLLGDEDAQKRGSSGAPGGTSGTTR-KNPRRTVSHDTNNYSRHGFSRLPDDGEDFSRWTVPQLREFLSVFRCLDNAGTSGLNKALLSTIAGDVVRMIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQRVNPLAQEGSRVWYRALQRTMDMGNLGKIWAVPAQEGVMWLGTR 981
VV++S+ E++ A KL+ + NMF +AVVW+P+ +TL+HFS +A + +I DTGTL SSVA IA GEVSP+TG W APP T A+ R G + T R K R+ V+HDTNNY +HGFSRLP EDF++WTV QLREFLSVFRCLD+AG S K L+ +AG VV MI+KCGLL++N AFRHPV D +SF+DKERM MP LP RI + +++HLPE+SKS ILQF+++VNP++ EGSRV +Q+ MDMGNL ++W VPA+ G+M+LG R
Sbjct: 91 VVQDSKEEETPAALEEAEEKLRRSQNMFHNAVVWDPLKNTLRHFSCAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVW------APPLLETRIAQEFRRATRRAGSQMPPXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYRKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLAELAGQVVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMAMPGLPGPRSRISGFEHLQQHLPEMSKSVILQFLRQVNPISGEGSRV---GMQKVMDMGNLNRLWGVPAKNGLMYLGMR 390
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI) HSP 1 Score: 289 bits (740), Expect = 6.290e-88 Identity = 160/319 (50.16%), Postives = 204/319 (63.95%), Query Frame = 1
Query: 25 FGQIQRALCEGVVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQHFSGSAPAQSIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVIAGAPPAASTPTAEPSRGTPTLLGDEDAQKRGSSGAPGGTSGTTR-KNPRRTVSHDTNNYSRHGFSRLPDDGEDFSRWTVPQLREFLSVFRCLDNAGTSGLNKALLSTIAGDVVRMIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQRVNPLAQEGSRVWYRALQRTMDMGNLGKIWAVPAQEGVMWLGT 978
F + L ++ ESR ED+ R +L+ H MF VVWNP++ LQH SG+ + I GT +S +A R+A + P TG EW P + G A E + E A R P +S +R + P+ DTNNY HGFSRLP + ED+++ TVP+LREFLSVFRCLDNAGTSG NKALL+ +AGDVVR+IR CG+LDTNLAFRHPV D +SFE+KE +M DLPA RI EWS +RR+LPEISK+ IL+F+ V LA EGSR+WYR++QR +DMGNL + WAVPA G+MW+GT
Sbjct: 263 FDAVVGYLASRLLVESREEDTPAVRREFEIRLRACHTMFTQPVVWNPLSGELQHLSGAPTREEITRHAGTSELSPLASRVARRDACPLTGREWDPPL-GTAQAKGQAVGEDAGRQKKRATPETASTR----PPNASSRASRSRGPQ-----DTNNYREHGFSRLPAETEDYTKLTVPKLREFLSVFRCLDNAGTSGFNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEARLMTDLPATGLRIKEWSAMRRYLPEISKAVILRFMGEVKKLAGEGSRLWYRSVQRVLDMGNLSRFWAVPAAGGIMWIGT 571
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: D7G6L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L7_ECTSI) HSP 1 Score: 192 bits (489), Expect = 1.550e-55 Identity = 119/266 (44.74%), Postives = 154/266 (57.89%), Query Frame = 1
Query: 58 VVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQHFSGSAPAQSIATDTGTLAMSSVARRIAWGEVSPSTGLEWVPVIAGAPPAAS--TPTAEPSRGTPTLLGDEDAQKRGSSGAPGGTSGTTRKNPRRTVSHDTNNYSRHGFSRLPDDGEDFSRWTVPQLREFLSVFRCLDNAGTSGLNKALLSTIAGDVVRMIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQ 849
VV++S+ E++ A KL+ +HNMF +AVVW P+ +TL+HFS +A + +I DTGTL S VA IA GEVSP+TG W P + A A T P P + G K R+ V+HDTNNY +HGFSRLP EDF++WTV QLREFLSV VV MI+KCGLL++N AFRHPV D +SF+DKERM MP+LP RI + +++HLPE+SKS ILQF++
Sbjct: 91 VVQDSKEEETPAALEEAEEKLRRSHNMFHNAVVWGPLKNTLRHFSCAASSLAITKDTGTLEFSYVASGIASGEVSPTTGQVWAPPLLEARMAQEFRRATRRPGSQPPXXXXXXXXXXXXXDQSTG-----RNKRSRKAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSV----------------------QVVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMAMPELPGPRSRISGFEHLQQHLPEMSKSVILQFLR 329
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI) HSP 1 Score: 177 bits (450), Expect = 9.950e-48 Identity = 89/168 (52.98%), Postives = 109/168 (64.88%), Query Frame = 1
Query: 475 DTNNYSRHGFSRLPDDGEDFSRWTVPQLREFLSVFRCLDNAGTSGLNKALLSTIAGDVVRMIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQRVNPLAQEGSRVWYRALQRTMDMGNLGKIWAVPAQEGVMWLGT 978
DTNNY HGFSRLP + ED+++WTVP+LREF+SV+RCLDNAGTSG NKALL+ +AGDVVR+IR CG+LDTNLAFRHPV D +SFE++E +MPDLPA RI + V +DMGNL + WAVPA G+MW+GT
Sbjct: 361 DTNNYREHGFSRLPGETEDYTKWTVPKLREFVSVYRCLDNAGTSGFNKALLAQMAGDVVRVIRSCGVLDTNLAFRHPVPDLSSFEEEEARLMPDLPATGLRIKIAAAV-------------------------------------LDMGNLSRFWAVPAAGGIMWIGT 491
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Match: D7G2U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U9_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.310e-38 Identity = 64/107 (59.81%), Postives = 86/107 (80.37%), Query Frame = 1
Query: 655 MIRKCGLLDTNLAFRHPVADTTSFEDKERMIMPDLPAISHRIPEWSVVRRHLPEISKSFILQFIQRVNPLAQEGSRVWYRALQRTMDMGNLGKIWAVPAQEGVMWLG 975
MI+KCGLL++N AFRHP+ D +SF+DKERM MP+LP RI + ++HLPE+SKS ILQF ++VNP++ EGSRVWYR +Q+ MDMGNL ++W VPA+ G+M+LG
Sbjct: 1 MIKKCGLLNSNQAFRHPIPDLSSFQDKERMAMPELPGPRSRISGFEHPQQHLPEMSKSVILQFPRQVNPISGEGSRVWYRGMQKVMDMGNLNRLWRVPAKNGLMYLG 107 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig193.84.1 >prot_P-littoralis_Contig193.84.1 ID=prot_P-littoralis_Contig193.84.1|Name=mRNA_P-littoralis_Contig193.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=328bp DQAAQDDAFGQIQRALCEGVVRESRLEDSQEARLNVMRKLQTAHNMFRHAback to top mRNA from alignment at P-littoralis_Contig193:302409..304226- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig193.84.1 ID=mRNA_P-littoralis_Contig193.84.1|Name=mRNA_P-littoralis_Contig193.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1818bp|location=Sequence derived from alignment at P-littoralis_Contig193:302409..304226- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig193:302409..304226- >mRNA_P-littoralis_Contig193.84.1 ID=mRNA_P-littoralis_Contig193.84.1|Name=mRNA_P-littoralis_Contig193.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=984bp|location=Sequence derived from alignment at P-littoralis_Contig193:302409..304226- (Pylaiella littoralis U1_48)back to top |