mRNA_P-littoralis_Contig193.69.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig193.69.1 vs. uniprot
Match: D7G1J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J1_ECTSI) HSP 1 Score: 510 bits (1314), Expect = 2.090e-172 Identity = 321/608 (52.80%), Postives = 373/608 (61.35%), Query Frame = 3
Query: 60 APPKVMLKNLAVQTVGETYFRVALVGLVAAAVLAIVAIVIGASRGLFEFNIDRCDCLLTSGAQDAIDEGQDCVFGADLLGVTIGWKSFVVERASSTDGCLDGWQGKTDIGSPFGDGIYSKKSMEYGNGATGAADACVGMFVASALVSIIMYKTVKMSYTGPGSIYSIGLHNIAMMCALLSVGSTISVMAFWGRVRGVLGVIGDSLAATLFKAALDVCEDDWDTVGFPI----NDEVFCQAAPWTFDVPLYAGWTAIAHVAVMFLTAVWILCKSSLVEGVLDGSILSDGKAVPPRVVEFEQAVGRALATTEDPDYDVPDNKLYTGEQKVMIRPYPLPSSVKKATKAVVKAIVSPLRKSAENTPRSRAYPSKHAMEQGFSLGSNVGDTGGPFSPR-SLGIADEDELNESTGLTEPKGADKKSVHEPTSPIAKAS----SKAARXXXXXXXXXXXXAEAVSSPKAEKPSHSKKSRQFASQREGREGWDDDGGSGSSVIRVTDGADSSPGAAYRLICRGRTHEKTRSEVDWSSIMEAGGSG----QGNXXXXEDESSHLESGMLGDLDMMFHGPSAKDGLTLGAITEDPREDMISEFTITPRKKESDSQFEV 1844
APPK+ ++N AVQ VGE YF+VAL V IGWKSFV+++A ST+GCLDGW+G DIGSPFGDGIY KKS YGNGATGAADA VG+FV SA ++IIM+KTVKMSYTGPGSIYSIGLHNIA+MC LLSV S IS+ AFWGR++G LG + SLAATLF A LDVCEDDWDTVGFP+ ++E+FCQA PW F+VPLYAGWTAIAHVAVMFLT+VWIL KS LVEG+LDGS L GKAV PRVVE+EQAVGRALATTEDPDYDV DNKLYTGE +MIRPYPLP SVKK KA +A+VSPLRK +P KH + G G P+ +LG E + L+ P P I +A+ SKAA XXXXXXXXXXXX + G G R ++ A R G+ H KTRSE+DW IM+AG + Q + +D+S HL S MLGDLDMMFHGPS KDGLTLGAITEDPREDM+SEFT+TP+ + S + FEV
Sbjct: 2 APPKLAMRNQAVQAVGEKYFQVAL--------------------------------------------------------VDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYRKKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEEIFCQAKPWNFEVPLYAGWTAIAHVAVMFLTSVWILTKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAA-EALVSPLRKMQGGSP-------KHTKDNTLRTGERAG-----VRPKIALGGDIEGQATGGHNLSSPG---------PVQSIPRATGAPGSKAATXXXXXXXXXXXXXXXLP-----------------------------GKPGGXXXRSASASEEEVSPAIRSSI-GKGHGKTRSEIDWGRIMDAGDNDGTAKQYDDGDEDDDSPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 501
BLAST of mRNA_P-littoralis_Contig193.69.1 vs. uniprot
Match: A0A6H5L9G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G0_9PHAE) HSP 1 Score: 203 bits (516), Expect = 1.370e-55 Identity = 161/391 (41.18%), Postives = 199/391 (50.90%), Query Frame = 3
Query: 831 MFLTAVWILCKSSLVEGVLDGSILSDGKAVPPRVVEFEQAVGRALATTEDPDYDVPDNKLYTGEQKVMIRPYPLPSSVKKATKAVVKAIVSPLRK---SAENTPRSRAYPSKHA-MEQGFSLGSNV-GDTGGPFSPRSLGIADE-----------------------------DELNESTGLTEPKGADKKSV---HEPTSPIAKASSKAARXXXXXXXXXXXXAEAVSSPKAEKPSHSKKSRQFA---------SQREGREGWDDDGGSGSSVIRVTDGADSSPGAAYRL---ICRGRTHEKTRSEVDWSSIMEAG---GSGQGNXXXXEDESS-HLESGMLGDLDMMFHGPSAKDGLTLGAITEDPREDMISEFTITPRKKESDSQFEV 1844
MFLT+VWIL KS LVEG+LDGS L DGKAV AVGRALATTEDPDYDV DNKLYTGE +MIRPYPLP SVKK KA + +VSPLRK S ++T + + A + +LG+++ G G + S G + P G +S E SP ++S + R A + + H + RQ S+ + WD D G + DSS G R + G+ HEKTRSE+DW IM+AG G+ + ED+ S HL SGMLGDLDMMFHGPS KDGLTLGAITEDPREDM+SEFT+TP+ + S + FEV
Sbjct: 1 MFLTSVWILSKSGLVEGILDGSKLVDGKAVT--------AVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAA-EVLVSPLRKMGGSPKHTKNNTLRTGESAGVRPNIALGADIEGQAPGGHNLSSPGPVESIPRAAVAPASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXPGGEGGRSASASEEEVSPAIRSSGSSGRTLNRRAH-----AMGIKPQSSMTSHHIIRRRQITMVNRDHVSTSKYHNKGPWDRDAGDVET--------DSSLGNVARSPASVVSGKGHEKTRSEIDWGRIMDAGHNDGTAKSYDDGDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKARGSATHFEV 369
BLAST of mRNA_P-littoralis_Contig193.69.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI) HSP 1 Score: 174 bits (441), Expect = 7.120e-44 Identity = 126/374 (33.69%), Postives = 170/374 (45.45%), Query Frame = 3
Query: 84 NLAVQTVGETYFRVALVGLVAAAVLAIVAIVIGASRGLFEFNIDRCDCLLT-----------------SGAQDAIDEGQDCVFGADLLGVTIGWKSFVVERASSTDGCL--------------DGWQGKTDIGSPFGDGIY----------SKKSMEYGNGATGAADACVGMFVASALVSIIMYKTVKMSYTGPGSIYSIGLHNIAMMCALLSVGSTISVMAFWGRVRGVLGVIGDSLAATLFKAALDVC---EDDWDTVGFPINDEVFCQAAPWTFDVPLYAGWTAIAHVAVMFLTAVWILCKSSLVEGVLDGSILSDGKAVPPRVVEFEQAVGRALATTEDPDYDVPDNKLYTGEQKVMIRPYPLPSSVKKA 1073
N AV VG T+FRVA+VG + + ++++G S+G FE+ +DRC C++ SG CVFG D V+IGWK F ++ T GC D + F D +Y + + NG + A V M V SI+ YK +K SY GS SIGL + + L+ VG+ ++++FW + G G +L L D C D D G + FC PWTF P I V + L ++++ K+ VEGVLDGS+ G + PRVVE E VG+ALAT DPDYD +N LY G MIRPYPLP S K A
Sbjct: 6 NAAVVAVGRTFFRVAIVGYTLSGLAMFPSVILGVSKGYFEWEMDRCTCVVEQEAAATTGQPIVSSSSLSGTGTTAGASSSCVFGQDFAKVSIGWKEFTYDKLVHTVGCPIATAFYEANPALDDDDLNLDNERSLYFFDEVYPLDGEFQKTDNPTQADESNGGSEAGGGVVAMQVVLTFFSILTYKMLKASYLSNGSHCSIGLALMTRLNLLVGVGTAAAIVSFWWLIEGRFGDEQKALTTALENILFDECWGETADDDAAGL----QTFCPVRPWTFTGPGLPMMLGIFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDS-ENPLYNGAA-TMIRPYPLPKSAKAA 373 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig193.69.1 >prot_P-littoralis_Contig193.69.1 ID=prot_P-littoralis_Contig193.69.1|Name=mRNA_P-littoralis_Contig193.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=608bp MVLGLLKKKDAKAPPKVMLKNLAVQTVGETYFRVALVGLVAAAVLAIVAIback to top mRNA from alignment at P-littoralis_Contig193:257727..274626+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig193.69.1 ID=mRNA_P-littoralis_Contig193.69.1|Name=mRNA_P-littoralis_Contig193.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=16900bp|location=Sequence derived from alignment at P-littoralis_Contig193:257727..274626+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig193:257727..274626+ >mRNA_P-littoralis_Contig193.69.1 ID=mRNA_P-littoralis_Contig193.69.1|Name=mRNA_P-littoralis_Contig193.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1824bp|location=Sequence derived from alignment at P-littoralis_Contig193:257727..274626+ (Pylaiella littoralis U1_48)back to top |