mRNA_P-littoralis_Contig193.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.67.1
Unique NamemRNA_P-littoralis_Contig193.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:249840..253711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1698
Hectar predicted targeting categoryother localisation
Exons7
Cds size1698
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.67.1prot_P-littoralis_Contig193.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 249840..253711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789929.801618-CDS-P-littoralis_Contig193:249839..2504561680789929.801618-CDS-P-littoralis_Contig193:249839..250456Pylaiella littoralis U1_48CDSP-littoralis_Contig193 249840..250456 -
1680789929.8110313-CDS-P-littoralis_Contig193:250624..2508211680789929.8110313-CDS-P-littoralis_Contig193:250624..250821Pylaiella littoralis U1_48CDSP-littoralis_Contig193 250625..250821 -
1680789929.8195963-CDS-P-littoralis_Contig193:251297..2514031680789929.8195963-CDS-P-littoralis_Contig193:251297..251403Pylaiella littoralis U1_48CDSP-littoralis_Contig193 251298..251403 -
1680789929.8287308-CDS-P-littoralis_Contig193:251849..2519981680789929.8287308-CDS-P-littoralis_Contig193:251849..251998Pylaiella littoralis U1_48CDSP-littoralis_Contig193 251850..251998 -
1680789929.8406584-CDS-P-littoralis_Contig193:252335..2524561680789929.8406584-CDS-P-littoralis_Contig193:252335..252456Pylaiella littoralis U1_48CDSP-littoralis_Contig193 252336..252456 -
1680789929.852093-CDS-P-littoralis_Contig193:252903..2531011680789929.852093-CDS-P-littoralis_Contig193:252903..253101Pylaiella littoralis U1_48CDSP-littoralis_Contig193 252904..253101 -
1680789929.8611274-CDS-P-littoralis_Contig193:253401..2537111680789929.8611274-CDS-P-littoralis_Contig193:253401..253711Pylaiella littoralis U1_48CDSP-littoralis_Contig193 253402..253711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.67.1

>prot_P-littoralis_Contig193.67.1 ID=prot_P-littoralis_Contig193.67.1|Name=mRNA_P-littoralis_Contig193.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=566bp
NRWPTHQSVRSSSAYMFYACLAGDCPAGSCLQGLSSRGTWGGQQQHLRRR
RRRRWRPKAVRIRRQERPLRSPQKNSSRTVHENGLQEEADDFSRGLYFEL
SCGRVDCSDGLPILERDMRGAMIAVWLAWGVRIDATRERFKIEEGRLAGV
HRAETAKVTYRTAARVSSGRREHGGITSYVLDLIVQEAALRDIGESGQAN
SIKIEAIRTRKKQFARRKDGLVLRRPMLESALRTQQASELLVIRNLAEAR
EARLSRTSPSRARDETVRLLQLHLSRARRLVTACFKAAAAAPRNRPKPTG
DLQAGSLFLNEADLLKLGKILLLAQDTANSSIERALPTNRRHGNVRTNRE
SAKTVDETVTSNGNDVTSAVATQSNACLWCNPAPVVGEQQRRLAANASRK
LPQRHNTCQAAAAAAAAAAAAAATRLAIPLEQPWRQRRRRVKDPSPPPSH
TRLQASEDYSDLLRPGKGLNTATTAAATALRSSRSSSTPETDPDDTVPSV
DTEDAAARKSVLARQGGGGRGYTAPTAFFCSWECAKRWNAKFSPVQTRYE
RELKVDLAAGRLVAR*
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mRNA from alignment at P-littoralis_Contig193:249840..253711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.67.1 ID=mRNA_P-littoralis_Contig193.67.1|Name=mRNA_P-littoralis_Contig193.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3872bp|location=Sequence derived from alignment at P-littoralis_Contig193:249840..253711- (Pylaiella littoralis U1_48)
AATCGGTGGCCGACCCACCAGTCCGTCCGGTCTTCAAGCGCATATATGTT
CTATGCCTGTTTAGCCGGCGATTGCCCAGCCGGCAGTTGCCTGCAAGGTC
TCAGTTCTCGAGGAACATGGGGCGGGCAGCAGCAGCACCTGCGACGGCGG
CGTCGGCGACGATGGCGACCCAAAGCCGTGAGGATAAGGCGGCAAGAGCG
CCCTTTGCGTTCTCCACAAAAAAATTCTTCCAGGACTGTTCATGAGAACG
GTTTACAGGAGGAAGCCGACGATTTCAGCAGGGGCCTTTATTTTGAGTTA
TCCTGTGGCCGTGCTCGAGGTGGTGATGCGGGTGTTGATGCAGCCAATCG
TGGGGTTGATGGTGGTAGATCGCCATGGTCATCACCAACTGTAACAGGGC
AAAACCACCATCACAAAAAGGAGACAAGCTCAAGGCAAACAAATTACCGG
AGGAACAAGGACATCAACTGCTGTAGCAGTGAGAAAAATGGCATGGAAAA
AAACTTTAACGGACCACGCACGCCCGTTCACCACTACAGTCGTTCCGGCT
GGTATGTCCTCACGAAAGGGCAAACCAAATATGAGGACGGCGTCGTCGTT
GGAAGTGGAGGTGTGGACTGCTCCGATGGGTTGCCGATCCTCGAGAGGGA
CATGAGAGGAGCGATGATCGCCGTGTGGCTGGCATGGGGAGTACGGATAG
ACGCGACAAGGGAGCGATTCAAGATAGAGGAGGGGAGGCTGGCGGGTGTT
CACCGGGCGGAGACCGCGAAGGTGACCTACCGAACCGCTGCTAGAGTATC
TAGCGGGCGTGTTCAGTTTACATGATGTTTGTGCCTTAAGTACTGCTGAG
GCTTTGCTCATACTATTAGACATTCAGGGTGAATGCTAAGAACAACGGTC
GCCGGGCATACATCGGGCATCGCGAATGTCGCACATCTATATCTTGCACA
CGTCGAGATAATACTTGGGTACGGAGATACCCCGATGCTTTTGTCACAAA
ACCATTGACTCCCCGCGATTATATGTTTTGATCGCAAAACGTCACCGGGG
GTCGACAAAAGAGGTATGGATTGTGTAACGGAGGGGTTGAGACCCCAAGC
ACCCCGAGTGGTAAGTACTCTTCCCTACCCAATAGTCCTGGACCCTCTAA
ATCCCGACTAGCCAAATGTGTGCATCGTTGCTTTCTGGACCGCATGAACC
CCTCTTGTATTCCTACCAAAGCTGGGGCGCTCAATCCTTACGGGGTCGTG
CGGAGGCAGAGAACACGGTGGAATCACCTCCTACGTGCTTGACTTAATCG
TCCAAGAGGCGGCGCTGCGGGACATAGGGGAATCGGGGCAGGCGAACAGT
ATCAAGATAGAGGCGATACGAACCAGGTGGGTCAGCCAGGAGCCAGCCCA
GAGAGCGTGTGAAACCCCCAATGGGGTGTCCAATCTAACCTCTCCATTGT
GCTTCAACCAGCAGGTTCTGACAAACTGCCCAACAGTAACTCCCAGCCAC
ATCTATTTTGCACAGTTCTTACTGTCAGCTGCCGTATCAAGCAACTGCTG
TGCTGGGGGTCACAACCAACCGATGCCGGAGGGAACTCCGCCATGCCCAT
TTTAGAGTTCACAGTCGCGCGATCTCTTCCCCCCGCCGTCTGTAAACGCA
TAATAGCAAGTCGTTGGTTAATGTTGCGTACATGTCGAAATTCATCATAT
TCTCGGCATGCAGGAAAAAACAATTCGCCAGGAGAAAGGATGGACTCGTT
CTGCGCAGACCAATGCTGGAGTCAGCGCTCCGAACACAACAGGCATCCGA
ATTGCTCGTCATTCGGAACTTGGCGGAAGCACGCGAGGCAAGACTTTCCC
GAACCAGCCCTTGTTTTTAGGAGATTTTAGAAGATATGGGACTGATGTGT
GACCCAGACACCTCGTGCCAGCCATTTCATCATTGAGGATGACCAATCCA
GTAGATGGGTGTCCTTGTTGACGAGGTTGTCGTTGCCGTGCTATGTACGC
CCACTGTCAATGGCTGCGACAAGGTCGTGCGGGTGAGCCAGGAACACATC
TTGATCTCCAACACAGCACTTCGTTCGCCAGACCCACGACATCTGTAGTC
TTCTCCTGCACATCCCGATATGCTAGTCCAACTCACCATTCTTTCCACAG
AGCTGTGTCCTTCTCGGCCACAGTGTGAAAAACCTCCAGTTTGACTAGAT
TAAAGACTGGCCATTACTCTGAAACTATAAAATCCCTTCACTGATCCCTC
TCTGGTTGTTCTCACCACCACACCGCCACGTCCCTGCCGTCGCTGCAGTT
GAAGCTAGCCAGAGCCCGGGACGAGACTGTGCGGCTGCTCCAATTGCACC
TGTCTCGAGCGCGGCGGTTGGTGACCGCATGCTTCAAAGCCGCGGCCGCG
GCTCCGAGGAATCGGTGAGACCCGTGTCAAGCACGGTAAATGCTACAATT
GACCCACACATGTTTCGAGATGGTTTCTCCTGTTCTTGCTTCATTAGACG
GGAAGTGGGCTCTCTCGTGTGTGTACATACCATAGTTCGCATGGGTAGAT
TATTTAGCCCTCCACGGCGAGGCCGCTCTTGAGCAGTCTCCGAAGCGTCA
ATAGCCGTTTGAAGGCGAGGTTCTCCGATTTTACATCGAAAATACGTTCG
ATTCTCCGTCCCTAGCCCCCCCCTTCCCCTACTCAATCTCTGAGTTTCAC
AGGAGCAGCACCATGGTGCCAAATGACTATGATCGTGATTTTAGCGTGTG
ACATCCCAATCAGTATCTCCTTAAGCAGAGTAGTAGCGCGATATCAAGAT
GCTACTCGTAAACGACAAAGTGTGAGACAACCCGAAGTTGTGCCCCCCTT
CAGTAAGCCTATTTTGTTGGTACCTTGCGCTACATCCCAGGCCAAAACCC
ACGGGGGACCTTCAGGCGGGTTCGCTGTTCTTGAACGAGGCCGATCTTCT
CAAGCTCGGGAAGATTCTGCTGCTTGCTCAGGATACGGCCAACAGCTCGA
TTGAGCGCGCTCTTCCCACGAACAGAAGGCATGGAAACGTCAGAACCAAT
AGAGAGTCGGCGAAAACCGTCGACGAAACCGTTACTTGTGCTGCACGCGT
GCCGATGAAAATGGAGCACGAACAGATGCTTGCCAGCCAAGACATTATGT
GCCCCTCCCCCACGTCTTTGTGCGACGACTCCAACAATGCCAATAGCGAG
CGAGTCGAGACAAAGAAACTGCTAGGAAGAAGGAGGGAAAAAAAAGCTGC
CGCAGCTAACGGGAACGATGTCACATCAGCCGTCGCTACCCAATCGAACG
CTTGTCTATGGTGTAACCCAGCCCCCGTAGTAGGTGAACAACAACGTCGT
CTCGCCGCTAACGCGTCAAGAAAATTGCCGCAGCGGCACAACACCTGCCA
GGCTGCTGCCGCTGCTGCCGCTGCTGCCGCCGCTGCTGCTGCTACGCGCC
TGGCAATACCGCTCGAGCAGCCTTGGCGACAACGAAGACGACGGGTAAAA
GACCCATCCCCACCGCCGAGCCACACCCGTCTCCAAGCCAGCGAGGACTA
CAGCGACCTCCTCCGACCCGGAAAGGGTCTAAATACAGCCACGACAGCCG
CGGCGACCGCATTGCGAAGTTCAAGGTCATCGTCCACGCCAGAAACTGAC
CCAGACGACACGGTTCCATCAGTCGATACAGAAGATGCAGCCGCAAGAAA
GAGTGTGCTTGCGCGGCAGGGCGGCGGCGGCCGCGGCTACACCGCACCGA
CGGCGTTCTTTTGTTCGTGGGAGTGCGCCAAGAGGTGGAACGCAAAGTTC
TCGCCCGTGCAGACCAGATACGAGCGAGAGCTGAAGGTGGACTTAGCCGC
AGGAAGACTTGTCGCAAGATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:249840..253711-

>mRNA_P-littoralis_Contig193.67.1 ID=mRNA_P-littoralis_Contig193.67.1|Name=mRNA_P-littoralis_Contig193.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1698bp|location=Sequence derived from alignment at P-littoralis_Contig193:249840..253711- (Pylaiella littoralis U1_48)
AATCGGTGGCCGACCCACCAGTCCGTCCGGTCTTCAAGCGCATATATGTT
CTATGCCTGTTTAGCCGGCGATTGCCCAGCCGGCAGTTGCCTGCAAGGTC
TCAGTTCTCGAGGAACATGGGGCGGGCAGCAGCAGCACCTGCGACGGCGG
CGTCGGCGACGATGGCGACCCAAAGCCGTGAGGATAAGGCGGCAAGAGCG
CCCTTTGCGTTCTCCACAAAAAAATTCTTCCAGGACTGTTCATGAGAACG
GTTTACAGGAGGAAGCCGACGATTTCAGCAGGGGCCTTTATTTTGAGTTA
TCCTGTGGCCGTGTGGACTGCTCCGATGGGTTGCCGATCCTCGAGAGGGA
CATGAGAGGAGCGATGATCGCCGTGTGGCTGGCATGGGGAGTACGGATAG
ACGCGACAAGGGAGCGATTCAAGATAGAGGAGGGGAGGCTGGCGGGTGTT
CACCGGGCGGAGACCGCGAAGGTGACCTACCGAACCGCTGCTAGAGTATC
TAGCGGGCGCAGAGAACACGGTGGAATCACCTCCTACGTGCTTGACTTAA
TCGTCCAAGAGGCGGCGCTGCGGGACATAGGGGAATCGGGGCAGGCGAAC
AGTATCAAGATAGAGGCGATACGAACCAGGAAAAAACAATTCGCCAGGAG
AAAGGATGGACTCGTTCTGCGCAGACCAATGCTGGAGTCAGCGCTCCGAA
CACAACAGGCATCCGAATTGCTCGTCATTCGGAACTTGGCGGAAGCACGC
GAGGCAAGACTTTCCCGAACCAGCCCTTCCAGAGCCCGGGACGAGACTGT
GCGGCTGCTCCAATTGCACCTGTCTCGAGCGCGGCGGTTGGTGACCGCAT
GCTTCAAAGCCGCGGCCGCGGCTCCGAGGAATCGGCCAAAACCCACGGGG
GACCTTCAGGCGGGTTCGCTGTTCTTGAACGAGGCCGATCTTCTCAAGCT
CGGGAAGATTCTGCTGCTTGCTCAGGATACGGCCAACAGCTCGATTGAGC
GCGCTCTTCCCACGAACAGAAGGCATGGAAACGTCAGAACCAATAGAGAG
TCGGCGAAAACCGTCGACGAAACCGTTACTTCTAACGGGAACGATGTCAC
ATCAGCCGTCGCTACCCAATCGAACGCTTGTCTATGGTGTAACCCAGCCC
CCGTAGTAGGTGAACAACAACGTCGTCTCGCCGCTAACGCGTCAAGAAAA
TTGCCGCAGCGGCACAACACCTGCCAGGCTGCTGCCGCTGCTGCCGCTGC
TGCCGCCGCTGCTGCTGCTACGCGCCTGGCAATACCGCTCGAGCAGCCTT
GGCGACAACGAAGACGACGGGTAAAAGACCCATCCCCACCGCCGAGCCAC
ACCCGTCTCCAAGCCAGCGAGGACTACAGCGACCTCCTCCGACCCGGAAA
GGGTCTAAATACAGCCACGACAGCCGCGGCGACCGCATTGCGAAGTTCAA
GGTCATCGTCCACGCCAGAAACTGACCCAGACGACACGGTTCCATCAGTC
GATACAGAAGATGCAGCCGCAAGAAAGAGTGTGCTTGCGCGGCAGGGCGG
CGGCGGCCGCGGCTACACCGCACCGACGGCGTTCTTTTGTTCGTGGGAGT
GCGCCAAGAGGTGGAACGCAAAGTTCTCGCCCGTGCAGACCAGATACGAG
CGAGAGCTGAAGGTGGACTTAGCCGCAGGAAGACTTGTCGCAAGATAA
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