mRNA_P-littoralis_Contig193.63.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A6H5KT20_9PHAE (FtsJ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT20_9PHAE) HSP 1 Score: 251 bits (641), Expect = 2.350e-72 Identity = 201/446 (45.07%), Postives = 231/446 (51.79%), Query Frame = 2
Query: 35 GRVETAERKGRRTGVVVAVDLLDLEVDLPGVEAIRGDFRDVSVELKILASLAARERXXXXXXXXCPTTEAT----MKSGEETSVVDETTRASLGRNSDGGGDGGVENIGGFNKGKEEEGNVQKDFNGERVFLPRGTSASRALLPRPEQPSTDPLEELFLAATSTPSVAAEEPTATPAAPAAQDIKPSSLVVGGVRRGRVSRDENGANRSPPSAPSSSTPPGSGRRRRANVVLSDMAPSFSGDRDTDQARVAGLVLDALAACLGDEATRLREQPQRCGAGAGGSDPQDREARGRSTGAAAYPCR-ADGDEAMSSTRSSGRILPGKGGQGSVTDVPGISFPGPGEMNSSSSSRRSDVRGRLTVPCSENERNVGGGGDEIEEEGSDGTGLLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGFLLGGRK 1357
G + +R+G VVVAVDLLD+E DLPGV+AIRGDFRD VE +I + L+ARER P + ++ E T+ RA L R+ D + + G+ ++G+ E FL RGTSASR LLPRPEQPSTD LE LFLA PA RA+VVLSDMAPSFSGDRDTDQ RVA LVLDALAACLGDEA+R R +P R GAG G + D G +GA A G++A R G + G +DV S G SSSR+ V GR DE +G GLLARGGTFLGKFFAGRDEREVKEEAERLFE VKVVKPPASRSGSGE YLLATGFLLGGRK
Sbjct: 132 GVLSAGDRRGGEA-VVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFSLLSARERLQPAPGNERPKLDEQRVLPLQPPEVTAAESGKERADLRRD-----DTKLRSSDGYGV---DDGSASDGVGEEDAFLLRGTSASRTLLPRPEQPSTDSLEHLFLAGGGNRD------------PATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRASVVLSDMAPSFSGDRDTDQGRVAALVLDALAACLGDEASR-RSEPPRKGAGERGRNSVDPLGGGEGSGAVRLGGDVAGGEKAARMRREEGNEVGATTGGTLSSDVGVSSNGGTAAETPVSSSRKHAVGGR----------------DEWGGIEGEGPGLLARGGTFLGKFFAGRDEREVKEEAERLFERVKVVKPPASRSGSGEMYLLATGFLLGGRK 539
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A6L5Z4E8_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Halovulum marinum TaxID=2662447 RepID=A0A6L5Z4E8_9RHOB) HSP 1 Score: 58.2 bits (139), Expect = 1.050e-5 Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query: 1178 LLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGFLLGGRK 1357
+L GGTF+ K AG E E+ ++ +R + VK VKPPASRS S EK++LATGF GRK
Sbjct: 180 ILVPGGTFVAKVLAGGAEGELLQQLKRDYASVKHVKPPASRSDSSEKFVLATGFR--GRK 237
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A2S7K0A4_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Marinicaulis flavus TaxID=2058213 RepID=A0A2S7K0A4_9PROT) HSP 1 Score: 58.2 bits (139), Expect = 1.260e-5 Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 2
Query: 1178 LLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGF 1339
+LA GG F+ K FAG E ++ ++ FE VK VKP ASRSGS EKY++ATGF
Sbjct: 215 VLAPGGAFVCKVFAGGAEGDILTRLKQNFESVKHVKPKASRSGSAEKYVVATGF 268
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A316GGX9_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Silicimonas algicola TaxID=1826607 RepID=A0A316GGX9_9RHOB) HSP 1 Score: 57.4 bits (137), Expect = 1.490e-5 Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 2
Query: 1178 LLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGF 1339
+L GGTF+ K AG E E++ +R FE V VKPPASRS S EKY++ATGF
Sbjct: 178 VLEEGGTFVAKVLAGGAEGELQLTLKRRFEKVANVKPPASRSDSSEKYVVATGF 231
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A6S6QUQ1_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Terrihabitans soli TaxID=708113 RepID=A0A6S6QUQ1_9HYPH) HSP 1 Score: 56.6 bits (135), Expect = 2.640e-5 Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 2
Query: 1178 LLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGF 1339
+LA G FL K AG ERE+ ++ F VK +KPPASRSGS E Y+LATGF
Sbjct: 175 VLAPNGRFLAKVLAGGTERELLAMLKKDFREVKHIKPPASRSGSSELYVLATGF 228
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A0J9GS43_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Candidatus Rhodobacter lobularis TaxID=1675527 RepID=A0A0J9GS43_9RHOB) HSP 1 Score: 56.2 bits (134), Expect = 3.730e-5 Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 2
Query: 1178 LLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGF 1339
+LA GGTF+ K AG E ++++ +R F V VKPPASRS S EK+++ATGF
Sbjct: 180 VLAEGGTFVAKVLAGGTEGDLQKTLKRRFAKVANVKPPASRSDSSEKFVVATGF 233
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A365U4Q7_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Rhodosalinus halophilus TaxID=2259333 RepID=A0A365U4Q7_9RHOB) HSP 1 Score: 56.2 bits (134), Expect = 3.910e-5 Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 2
Query: 1178 LLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGF 1339
+L GGTF+ K AG E ++ E +R F V VKPPASRS S EKY++ATGF
Sbjct: 180 VLEEGGTFVAKVLAGGAEDALQAELKRRFAKVSNVKPPASRSDSSEKYVVATGF 233
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A4Q3Y9A2_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Loktanella sp. IMCC34160 TaxID=2510646 RepID=A0A4Q3Y9A2_9RHOB) HSP 1 Score: 56.2 bits (134), Expect = 4.040e-5 Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 2
Query: 1178 LLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGF 1339
+LA GGTF+ K AG E E+++ ++ FE V VKPPASRS S EK+++ATGF
Sbjct: 183 VLAPGGTFVAKVLAGGAEGELQKLLKQRFEKVANVKPPASRSDSSEKFVVATGF 236
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A1I1DM63_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Tropicimonas isoalkanivorans TaxID=441112 RepID=A0A1I1DM63_9RHOB) HSP 1 Score: 55.8 bits (133), Expect = 5.380e-5 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 2
Query: 1178 LLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGF 1339
+LA GGTF+ K AG E E+++ + FE V VKPPASRS S EK+++ATGF
Sbjct: 178 VLAPGGTFVAKVLAGGAEGELQKLLKNRFEKVANVKPPASRSDSSEKFVVATGF 231
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Match: A0A3M0WK59_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0WK59_9PROT) HSP 1 Score: 55.8 bits (133), Expect = 5.860e-5 Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 2
Query: 1178 LLARGGTFLGKFFAGRDEREVKEEAERLFEGVKVVKPPASRSGSGEKYLLATGF 1339
+LA GG F+ K AG E E+++ +R F V VKPPASRS S EKY+LA GF
Sbjct: 185 VLAPGGVFVAKVLAGGAEGELQKRLKRAFREVHNVKPPASRSDSAEKYVLALGF 238 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig193.63.1 >prot_P-littoralis_Contig193.63.1 ID=prot_P-littoralis_Contig193.63.1|Name=mRNA_P-littoralis_Contig193.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=373bp MKSGEETSVVDETTRASLGRNSDGGGDGGVENIGGFNKGKEEEGNVQKDFback to top mRNA from alignment at P-littoralis_Contig193:232631..234821- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig193.63.1 ID=mRNA_P-littoralis_Contig193.63.1|Name=mRNA_P-littoralis_Contig193.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2191bp|location=Sequence derived from alignment at P-littoralis_Contig193:232631..234821- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig193:232631..234821- >mRNA_P-littoralis_Contig193.63.1 ID=mRNA_P-littoralis_Contig193.63.1|Name=mRNA_P-littoralis_Contig193.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1119bp|location=Sequence derived from alignment at P-littoralis_Contig193:232631..234821- (Pylaiella littoralis U1_48)back to top |