mRNA_P-littoralis_Contig193.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.21.1
Unique NamemRNA_P-littoralis_Contig193.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig193.21.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 1.850e-103
Identity = 182/331 (54.98%), Postives = 200/331 (60.42%), Query Frame = 1 
Query:   82 MRSEIATFLAFGL-SVSSVAAAPTYSCFDPPD-------------VVGSECCEALIDESDMEAGRIVIWDPVNCNHGPGEFAIAEAPLCRAHDTDGCRFCHDSCVGFEGLCITCDEVL---MSTSSPTPSPFDFGVSFSPDTPAPVMVTPTETGVPFDIFPETLAXXXXXXXXXXTPGPVAPLPGPVTG---------------------------------------------------APVEPPTA-VEECACVDTLSEEERAVLTRRSKQMVCDSTCSDPIDPVWGVLNCDYFALGQNCRACSDICVDQGFSIWLDQDGFPCKPCFAI 867
            MRS+IAT +AFGL SV  V+AAPTYSCFDPPD             VV SECCEALIDESDM A R VIWDPVNCNHGPG+  IAEA LCRAHDTDGCRFCHDSC G+EGLCITC+EVL   +++ SPTPSP DF  S  P TPAP ++T   T  PF IFP T             P PVAP+  P                                                      AP   PTA   +C CV++LSEEE AVLTRRSK MVCD TCSD  D VWGV+NC+YFALGQNCRACSD+C DQG   WLDQDGFPCKPC AI
Sbjct:    1 MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSDSPTPSP-DFETSEFPATPAPAILT-AATEAPFGIFPAT-------------PAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPA--PTAEASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 314
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K8_ECTSI1.850e-10354.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:27235..33568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FTU6
PFAMsTRP,VWA
Model size871
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons5
Evalue0.000608
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001410.1
Descriptionstructural constituent of cuticle
Cds size870
COG categoryD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789928.3271368-CDS-P-littoralis_Contig193:27234..273651680789928.3271368-CDS-P-littoralis_Contig193:27234..27365Pylaiella littoralis U1_48CDSP-littoralis_Contig193 27235..27365 -
1680789928.3380854-CDS-P-littoralis_Contig193:29935..303111680789928.3380854-CDS-P-littoralis_Contig193:29935..30311Pylaiella littoralis U1_48CDSP-littoralis_Contig193 29936..30311 -
1680789928.3488019-CDS-P-littoralis_Contig193:30755..309031680789928.3488019-CDS-P-littoralis_Contig193:30755..30903Pylaiella littoralis U1_48CDSP-littoralis_Contig193 30756..30903 -
1680789928.357538-CDS-P-littoralis_Contig193:33314..333541680789928.357538-CDS-P-littoralis_Contig193:33314..33354Pylaiella littoralis U1_48CDSP-littoralis_Contig193 33315..33354 -
1680789928.365411-CDS-P-littoralis_Contig193:33393..335681680789928.365411-CDS-P-littoralis_Contig193:33393..33568Pylaiella littoralis U1_48CDSP-littoralis_Contig193 33394..33568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.21.1prot_P-littoralis_Contig193.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 27235..33568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.21.1

>prot_P-littoralis_Contig193.21.1 ID=prot_P-littoralis_Contig193.21.1|Name=mRNA_P-littoralis_Contig193.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=290bp
SRTPTSIHTRYLPAATNLSSQTTHIPVMRSEIATFLAFGLSVSSVAAAPT
YSCFDPPDVVGSECCEALIDESDMEAGRIVIWDPVNCNHGPGEFAIAEAP
LCRAHDTDGCRFCHDSCVGFEGLCITCDEVLMSTSSPTPSPFDFGVSFSP
DTPAPVMVTPTETGVPFDIFPETLAPVTPTPADPATPGPVAPLPGPVTGA
PVEPPTAVEECACVDTLSEEERAVLTRRSKQMVCDSTCSDPIDPVWGVLN
CDYFALGQNCRACSDICVDQGFSIWLDQDGFPCKPCFAI*
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mRNA from alignment at P-littoralis_Contig193:27235..33568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.21.1 ID=mRNA_P-littoralis_Contig193.21.1|Name=mRNA_P-littoralis_Contig193.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6334bp|location=Sequence derived from alignment at P-littoralis_Contig193:27235..33568- (Pylaiella littoralis U1_48)
TCTCGCACCCCCACCTCCATTCACACCAGGTACCTCCCCGCCGCCACCAA
CCTCTCCTCTCAGACCACACACATCCCGGTCATGCGTTCTGAAATCGCCA
CCTTCCTCGCCTTCGGGCTCAGCGTCTCCAGCGTCGCGGCCGCGCCGACG
TACTCGTGCTTCGATCCCCCTGACGAGGGACAGACCAATCCACTGGGAGA
GGGCATGGAGGACGTCGTGGGATCCGAGTGCTGCGAGGCACTCATCGACG
AGAGGTGAGTTCAGGGTATATCGATCGGCTATTGTGGGTTGAGAAGCTGC
GATGCGGTGCGGTGGTTGTGGTGGTTGTGGTGGGGTGAAGCCGCAGCAGC
GCTTCTGCTTTCCCTGCGGATCTTGGATGATCGTGTGTCTCGTTGCGGAT
TTCCGCGGGGCGGAAACGCGTACATGGTCCCTCTGATCCAAAAGTTCAGT
GACACGTATCATTCTGTGGGATACATCAAGAAGGGCTGCTGTCACTGCTG
CTGCACACTTATCAACATGGGCTATTCGCTTGTACGGGTTTGGTGCAGAC
AGGCGCCTCGTGCCTTTCTCGCCCCGCCTTCCCGTGCCGTTGGAGCGTCT
GTCTGCCTCCTGCCAACCCTGAAATCAGTATGGATCACAAGCTCGGAGAA
CGTCGCACCCCTCTTTGCATCCTCGCAAATTACGTTACACCACGCCCAGA
ACATGACTTTGGCGTAATTACATACCCAGATGTTGGAAAGCAAGACAAGT
TAGAAAGGAATCGCGGTGATACCAACGCGCACGCGCGTGTATGGTGGCTG
AGAGGCGCATGCCACATGCTCAGGCGCCCACCAGCTCCACAGTCTAAAGA
CTGAACCAACGTTGCTCTACGCCGCAAGTTGCACAGACAACGGTAAATGT
AATACAGTACATTCACAAGTTTTTGGGGTGCTCGGAGGGCATGTCGCGTC
ATCATATTTGAAGTACTTTTTCTTGTGCTTTGTTGCCGATTTACACAGTA
GTAATTATTGCGGAAACTATCGCGCTTTCGCTCGCATACCTCTCTCTTTA
GAAATAGTATACCGCATTTGGTTTCGGCAAGGGAGACGGGAACGTTGGGT
GAATGCCTCCAGGTCGTCGCCTGTGTTTTGCGTGTATCCTGTACAGCGTA
GTTCTGGGCCCTTTTTCCCTCGACGAAACATGTACAAGTACGCAGCAGCA
TAGACTACTCGTACAAGCACAAGGAGCGAGTATTGTTAATGTTTTGTTTG
GTCAAAACCGCCAAAGGTCAGCTCTTCCTACAATTTCCTGCAAGGTTTTG
TTCTGTGCGACAATAGCCCGAAGACCTAATTTTCCTGCAAGTTTCTTCCT
CAACGGAAAGACCCCGAATAAGCAACGCCCGCCCCAGACTCTCTACTCTA
TATGTTGCGGCAAGTGTTCCTCGTGCGTGTGTGTGTTTGATGTATCACCC
TGTCTAAACTGGGAATAGTCGGCCGAGTACAAATAATCAAATTGGACACA
CATAGGATCATCCTACCCGTGGCTGTGGCTGCGGCATGTCGCTGCTGCTA
CGGGGGACGAATACGAAGTTTCATCACACGAAACGGTAGCCTCAAATCAA
GTATCAACGAGTACAAAACAGGGTACACCCATGAGTCGCCACGATATTTT
TAGTCATATAAAGTATGTTCTGTGCGCATCGAGACAGGAATCTAGCGTAC
TGCCTTGTTGGAGTGTATGTGTGCGATTTCATCCCATTCATTCTGGGTAC
CAAACTACACCTTTCGGTGTGAAGCGGGTGCACCAGGCGGGGGCACACAG
AGGGACGGTCATGCAAAAAAAGTATTTTTTCTTTTGCCTTCACACACCTT
TCTGCGCTGTTTGTCTTCTTACTTTTCAGCTTTTCAATATCGTGAGAGTG
GTTCAGCCGTGCCTCACCCTCATCGACTGTTAAGTCGAGTTTGTTTGTAT
GCTCGCGACGTATGATACTCGTAGTCGTTTCCCACTCCTGAGAACTAATG
TGAGAATCCGAGATCGTGTGGCTTCACCGGAAATAGAATGCACGTCCTCT
GTAGGTGTCAGTAAGCTTCGAGGTTAACTACTGTATCACTTTGAGAATAA
TTCGAGATCGTGTGACTTTACCGGGCTTCGAAGGCGCGTCCTGGGTGTCA
ATAGGGTTTCAGGTTTCCTCCTTAAGCTGGGGCGACCGGTTAGGGTTTTA
TGCACGGGCAAATTCTTCTTTCAACACATCCTTATGCGGCGCGGACGACA
AGCGAAAAACAAAATCGTTCCACCGCAGTAGACGTCTCCCATCGCTTGCG
CTGATGAGTCCACTAAAGGGTTACCGGGGTCGTTTCTCTCCAGGGCAGGG
GTTGGGGATGGGTGCAGCACTTGGCGCGATCCCTGACGGTATCCCCCCCG
AACTATACGTCTGTTTCTCGATTGAACCATCCGCGCCGGTGGTTTTGTTG
ACGGTGTATGCTGTTTGCTGTTCTGTGCGAATCTCATCGGGAGTATCATA
TTCCGTTGCTGTTTTTTCGATCGTTCGACCTTGCCTGAAATGGCATTACG
TTTTGTCTTTTGCCAGACCACCACCAGCCGTCTTCTTATTTATGTCATCG
ATCTGCTTGCCTGCTTCTGTGCACTGGTGTGTTTCGCCCCAACTTTAATT
TCCTTTCAATTTCAGCGATATGGAGGCCGGTCGCATAGTCATCTGGGACC
CCGTGAACTGTAACCACGGGCCTGGCGAGTTCGCCATCGCCGAGGCCCCT
CTCTGCCGCGCCCACGACACCGACGGCTGCCGCTTCTGCCACGACTCGTG
CGTCGGCTTTGAGGTGTGTGTATGTGTGTGCGGTTCTGTAGTACCCGAGC
GTGAAAAAAAGGTGTCCGTCACAAGCTATGGCTGAATCAGAGTCTCCTTA
TTTTACTGCCTGCTATTGTTTCCTAGTAACTCCCATGTATATAGTTTACC
TACCGCCTTGTTTTGATTTTCACCCCTTCTCGGCTGTCTTCTTGTCTGTT
TGTTCGTGTTCGATGCTGCTGCTGTCGTCATGTCTGTGCGTAAGTTTTGA
AGTCTGTTTTTTTTCGGACTTCATGTTACGTGAAAGCGAATGACACATGT
GATATTTCTCTCCCATGTTTTCCCCGGTCATACCCAGAAATCATACATAT
CATAGAAGTATCACCTACTTCTCTCTCTTCGTCACCTCAAGCACCAGCCT
GTCGCCACCTAATCCCCCCCCCCCGAACACCCCCAAAAATACACATGGTG
CACACAGGGACTCTGTATTACCTGCGATGAGGTGTTAATGTCGACCAGCA
GCCCCACCCCGTCCCCATTCGACTTCGGAGTCTCCTTTTCCCCGGACACT
CCGGCCCCGGTCATGGTCACCCCGACGGAAACGGGCGTCCCTTTCGACAT
CTTCCCGGAGACGCTCGCCCCCGTCACTCCGACTCCTGCCGATCCCGCTA
CCCCGGGCCCCGTTGCTCCCCTACCCGGTCCGGTGACCGGAGCGCCTGTC
GAGCCTCCAACGGCGGTCGAGGAATGCGCGTGCGTCGACACGTTGTCGGA
GGAGGAGCGGGCGGTCCTCACGCGACGGTCCAAGCAGATGGTGTGCGACT
CCACGTGCTCCGATCCCATCGACCCTGTCTGGGGTGAGTTTTGTTGTTGT
TGTTGTTTTTGCAAGAGTAAACGGCTTCACAAGAAACAAAGTAACAACAG
TAACGTAATGGATGCGTACAGCCTGGTAAGCTGTTTGAATTTTTCGGGCC
GTGAACCAGGCACGACCTATACCCGTCGAAGAACAGAGATCGTTAATCGA
TTCAGCAGCGTCGAGCCACATGGTGGGCGACGGGCCTTGAATTTCCAAGC
ATGAATATGGTGGAGCAAGAACATGACAGCGTGCGCAATTCAAGGATCGT
TTGATGGCGCACCGAGCGCCACGAAGTAAGCTGCACTCGTGCACCTCGCT
CTCTCTTCGTAGCGCCCCGCAGAACCTCAGTGTGAGGCACGTGTGTGAGT
GGGGTTCGCGGGACGCTGCAATGAGGTGTACGCTTTAGAGAAACTTCATT
TGTGGCGACCACACACATACATAATCCTCCAGTGCGCGAGCTGTTGCCCT
CTCGCTCCACCACAGTCACGTCCGGAAATCCGAGGCCCGTCGCCCACCTT
GTGGCTCGGCTGCACAACACGCACGCACTCACACGATTTTTGTTCTTCTT
GTTTGGTGCAGCGCACTGCAAGCGCTGTCAAGAGAGGCTCAAGCGCCCGC
CTCTATCGCACCCCCCCGCCTATCGGTAGCTAGCGGAAACGGGAATGGTG
ACCCGGATCACCCCCGTCCACCCTTCCCTCTACGGATAATCCTACCTACC
TAATGGTCGCAAACACACGAGTGTGTACCGCCCACTTTCTGTTGGGGCTT
TGCGTGTGGCAACCCTGGCTTGGCGCGCACCCTACAAGAGTTAGCCCCGC
CCAGCTCCCCTTCATCTTGCAGCAGTGAAAAACGCCACTGCAGGTGGCAG
AGGACAAAAAACAAAACACCCCCGAACTTAAAGAATCAATCGTGTGCTTT
GCATGATGAAATAATAGACTCAGACGCCCTCGATTGATTGTATACCGATA
AATTTGGCGCCGCAGCAAAGCCTGTTCCACAGCTAGCTGTCGCCTTCAGT
TTATTTCTCTTTTAGCTCCAAAATAAATCGAGCATACCCCCCTTCGCCCC
CTCCCCCCATCCGGAATATTTTGTTCGACTCGAATGTAGAGCGGTTGAAT
CCTTGGCAGATATGAAGATGTCAATATCAGACCGCGCGTTATGGCAGCCA
AAATTTGCTTAGTCTTTCCGTACCCCCCCCCCCAGGATTTAGGCTCTGCA
TTTCCAAAGTTAACTTTTTGTCCGTCCGTGCTTACGGTCCAGGACTCTAC
TGCTGTAATATATCTTGATGTTATGGAACTGCTGTGGGGAGGGTGGCATG
GGTGGCCCATCTCATCGCACTCTGGTTACAGAACCACCCATTACACAATA
AACACCGAACGTGGTGCGCCCGTCCAGGGCTCGGAACAACCCTACGTGCA
TTGCCTTGCCAATCTGGCCGAGGACGGTGGCGGCCGTTCTTCAGGCGTGC
AAAAAAAACATCTGACCACAGGCTTGAAGCTGAAAATGTCAAAAGCGAGT
TTTGAGACCCATACGTACTCGTAAAGCAAAAAATGCAGCTTTTCAACAGA
CACCCGACCACGCCACACTCGTTTCTCGCTCCATCGAGCACAGGTCAACC
TGAAACTTAGAAGGGTGGGATCTCCACTAACTGCTTACCGCCAACAGGGC
GTTGGGTCGGCGGTGGGGTCATTCAACCAGCAAGGAGTAGCAGCGCTTGA
GGGCGTGAGCTTCGAAAAAAAAACAGAATCTGTCTTTTTGTTTTCTCTTG
AAAATAGAAAGCTTTCTCTGCTGCCTTAAAAATCGTTTTCCGAACAGATG
TTCAATACACTGCGCTACTACTCCCTGCTGATTGAATGATCCCACCGCCA
AACCAAAGCCATTTCGGCCGTACATAGTGAGTGGAGCTCCCACCCCTCCA
AGTTTCGGCGTGATATGTGCTCCATGGAGCGAGAAAGCGAGTGTGGTGCC
CTCGGGTGTCTATTCAAAAGCTGTCTCTTTTGTTCTGTGGGCCTCAAAAA
TGCTGTTGATATCTCCAGCTTCAAGCCTGTGGCAAATTGTTTATTTTGCA
CACCTCAAGAACAATCGCCACCGGCCAGTGGCCAGGTTGGCAAGGCAATG
CACGAAGGGTTACTCCGAGCCTATGATGAGCGCGCTACGTTCTGTATTTC
TTGTGTTGTTCATGATTGTGTCTCCAGCAGCATGTGTGGTGTGTGCATGC
GTGTCGAGCGGCACAATCGACCCCCCCCCCTCCAAACAAGTTTTCGAGGG
GGCGTGGCTCGCCCAAAAGTTGGGCCCAACTTTCCCAAAAACCCAGCATC
GCGATCTCGATCCAAAAGTTTTGAAGATTCCAAGGCAACTTTTTGCCCCA
TTCCAGGTGTCATGGAGAAAGTTTCTTGAATCATCCTACCCCCCCCCCAC
CAAAAATCAAGATTAAGAAAAATATTTGGCTTCCATAACGTGCGGTCTCA
AGCAAGCTTTATTTCTCGCTCGCAATGATGTCAACTCTTTCACCTTTTTG
ACACCACCATCCCATCGACCTCCACCCCCTGCTTCGTATATATGTTTTTC
AAGGTGTGCTGAACTGTGACTACTTCGCCCTGGGCCAGAACTGCCGCGCG
TGCAGCGACATCTGCGTCGACCAGGGCTTCAGCATCTGGCTGGACCAGGA
TGGGTTCCCCTGTAAGCCCTGCTTCGCCATCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:27235..33568-

>mRNA_P-littoralis_Contig193.21.1 ID=mRNA_P-littoralis_Contig193.21.1|Name=mRNA_P-littoralis_Contig193.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig193:27235..33568- (Pylaiella littoralis U1_48)
TCTCGCACCCCCACCTCCATTCACACCAGGTACCTCCCCGCCGCCACCAA
CCTCTCCTCTCAGACCACACACATCCCGGTCATGCGTTCTGAAATCGCCA
CCTTCCTCGCCTTCGGGCTCAGCGTCTCCAGCGTCGCGGCCGCGCCGACG
TACTCGTGCTTCGATCCCCCTGACGTCGTGGGATCCGAGTGCTGCGAGGC
ACTCATCGACGAGAGCGATATGGAGGCCGGTCGCATAGTCATCTGGGACC
CCGTGAACTGTAACCACGGGCCTGGCGAGTTCGCCATCGCCGAGGCCCCT
CTCTGCCGCGCCCACGACACCGACGGCTGCCGCTTCTGCCACGACTCGTG
CGTCGGCTTTGAGGGACTCTGTATTACCTGCGATGAGGTGTTAATGTCGA
CCAGCAGCCCCACCCCGTCCCCATTCGACTTCGGAGTCTCCTTTTCCCCG
GACACTCCGGCCCCGGTCATGGTCACCCCGACGGAAACGGGCGTCCCTTT
CGACATCTTCCCGGAGACGCTCGCCCCCGTCACTCCGACTCCTGCCGATC
CCGCTACCCCGGGCCCCGTTGCTCCCCTACCCGGTCCGGTGACCGGAGCG
CCTGTCGAGCCTCCAACGGCGGTCGAGGAATGCGCGTGCGTCGACACGTT
GTCGGAGGAGGAGCGGGCGGTCCTCACGCGACGGTCCAAGCAGATGGTGT
GCGACTCCACGTGCTCCGATCCCATCGACCCTGTCTGGGGTGTGCTGAAC
TGTGACTACTTCGCCCTGGGCCAGAACTGCCGCGCGTGCAGCGACATCTG
CGTCGACCAGGGCTTCAGCATCTGGCTGGACCAGGATGGGTTCCCCTGTA
AGCCCTGCTTCGCCATCTAA
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