mRNA_P-littoralis_Contig193.87.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.87.2
Unique NamemRNA_P-littoralis_Contig193.87.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.87.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:306182..308751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1405
Hectar predicted targeting categoryother localisation
Exons5
Cds size999
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.87.2prot_P-littoralis_Contig193.87.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 306518..308681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789928.091747-UTR-P-littoralis_Contig193:306181..3065171680789928.091747-UTR-P-littoralis_Contig193:306181..306517Pylaiella littoralis U1_48UTRP-littoralis_Contig193 306182..306517 -
1680789928.1559868-UTR-P-littoralis_Contig193:308681..3087511680789928.1559868-UTR-P-littoralis_Contig193:308681..308751Pylaiella littoralis U1_48UTRP-littoralis_Contig193 308682..308751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789928.1043518-CDS-P-littoralis_Contig193:306517..3068451680789928.1043518-CDS-P-littoralis_Contig193:306517..306845Pylaiella littoralis U1_48CDSP-littoralis_Contig193 306518..306845 -
1680789928.1168075-CDS-P-littoralis_Contig193:306974..3070731680789928.1168075-CDS-P-littoralis_Contig193:306974..307073Pylaiella littoralis U1_48CDSP-littoralis_Contig193 306975..307073 -
1680789928.1282287-CDS-P-littoralis_Contig193:307408..3076501680789928.1282287-CDS-P-littoralis_Contig193:307408..307650Pylaiella littoralis U1_48CDSP-littoralis_Contig193 307409..307650 -
1680789928.1375172-CDS-P-littoralis_Contig193:307937..3080601680789928.1375172-CDS-P-littoralis_Contig193:307937..308060Pylaiella littoralis U1_48CDSP-littoralis_Contig193 307938..308060 -
1680789928.1467388-CDS-P-littoralis_Contig193:308474..3086811680789928.1467388-CDS-P-littoralis_Contig193:308474..308681Pylaiella littoralis U1_48CDSP-littoralis_Contig193 308475..308681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.87.2

>prot_P-littoralis_Contig193.87.2 ID=prot_P-littoralis_Contig193.87.2|Name=mRNA_P-littoralis_Contig193.87.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=333bp
MKDCVRDLVSSSEFRQWFDEAAVSGVSRINKSKVENLTKTSKEVVDAAKL
AGVNLLSTSIQKPLAKHSKEIDGLGKQVKAMEGDVKKMQTSIKDPKAGVT
TAVGKAKTSQKGMSETKMLEIVKASDLKRAADLKILIESEVRAIKADLLA
AYEEKVARLEAAMKAENAQVLANMANGLHYVVREVVSQVESAGKKRSSTT
DLTPSPPSTRRSSSRRKQAPTVDSDQDAEARPGTEEKKPASGASDENAVV
MMARSMGMQMVPANSSGYYPPVGASPALANQVFGGVNAVPLAGGLMSPQG
GFIHAFAQPAGGHPFSQAQAGQPSAVHPFVYR*
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mRNA from alignment at P-littoralis_Contig193:306182..308751-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.87.2 ID=mRNA_P-littoralis_Contig193.87.2|Name=mRNA_P-littoralis_Contig193.87.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2570bp|location=Sequence derived from alignment at P-littoralis_Contig193:306182..308751- (Pylaiella littoralis U1_48)
CTCTCGAGGCACGCCCACTCGTCAACCCCACGACGACAAAGTCGTGACGT
ATGCAGAAGTCAAAATCTGCATGAAAGATTGCGTTCGGGATTTGGTATCT
AGCTCTGAGTTCCGGCAATGGTTCGATGAGGCCGCTGTCAGCGGTGTCTC
GAGGATCAACAAAAGCAAAGTAGAGAACCTAACGAAGACCTCGAAGGAGG
TCGTGGATGCCGCCAAGTTGGCGGGGGTGAACCTCCTGTCGACCTCGATC
CAGAAGCCTCTGGCGAAACATTCAAAGGTAAGGCATGCCTCTCATCTGGT
TTCAAACCTTTGTTCAACGCGAGAAGAGGTAATCTCGGAGTTGAACTTTG
GCGGAGTCATTGGCAGCCCCTCCCCCGCATGCCCTGATGCAAAAGTGGGA
AGGCCAACTCGAATCCTCTGGACTACGAGTCTCTCTCTGTCATCTGCGTG
CAGTTCTACAAATGTGTTCCTGGTTTTATTCCGTTCTTATCCCGCGCAGT
GTCCCAGCGAGAACCTTGAAGGCGTGTCTTTGTACAAGTGGTTACTTCAT
ACGAAGTATGAATCTGCCGATACATGCGAGTGTGAGTGTCTTTGATACGC
ATGTTAGTCGTGTCCGGGCCGTCAAATAATTTGTTGACATGCCGGCGTAA
TCTCGCGGGGAACACTTGTACGCGTTGTATATCTGCCGCAGGAGATTGAT
GGTCTGGGCAAGCAGGTCAAAGCAATGGAAGGCGACGTGAAGAAGATGCA
AACTTCCATCAAGGACCCGAAGGCGGGCGTGACCACTGCCGTGGGCAAGG
CGAAAACATCCCAGGTGACAGGTTTTTATTCGTCTGTTTGATGATGTGAG
TGGCGCGGCGGAGCTGCAGAACTCCTGTCGTCCTCTGCGGATGAGCTGCA
TTTGACATGTGCAAGTACGATTGTCCCGTACTGACCGGTGCGAGTAAAGG
CGTCATCATTCGACTGGCGTTCACTCGGTTCACCCCTCGCGCTCCTTTTT
TTTTTTGTTATCTCACAGCACACATCAATATGTTCGCCTCGCCCCCTTTT
TCATGCTTCGCGCTCCCCTCCTCTGTCCGTATGTGTGGCACTTGGAAAAA
GAAGGGAATGTCAGAAACGAAGATGCTGGAGATTGTCAAGGCTTCCGACC
TGAAGCGTGCCGCAGATCTGAAGATCCTCATCGAGAGTGAGGTTCGAGCC
ATCAAGGCCGACCTCCTGGCAGCGTACGAGGAAAAGGTCGCGAGGCTGGA
AGCTGCCATGAAGGCGGAGAATGCCCAGGTCCTGGCGAACATGGCAAATG
GCCTTCACTACGTCGTGCGAGAGGTCGTATCCCAGGTCGAAAGGTGAGAA
ATTAAGACAACCCTGCGGTTGGTGTACGTGTTGGCACTTGCGCTTTATTT
ATTCATGTAAATAGTTTGGAGCCGGAAAGGATTTACAGTTTCAATGTACC
TCAGACCTAGGCGGGAAGAAATTTATGTATTTTCGACAAAAAAATACGCA
GGAGTCGCGAGGCAGAGGCCTCATACCCGTTCCCACGCCCCGGCGTTTCG
AACTGTCCCGTCCTTTTCCCCTTCTGAATAAAGTTGTATAGCATGACCTT
GTTTATTTGAAATCATGCAGACATAACGTCGAACAACTTTTCGTTTATCT
GTGCCTGCTTGCGAAACACGTCTCTTAGTGCTGGAAAAAAGCGCTCGTCC
ACCACCGATCTCACGCCATCCCCGCCGAGCACCAGGCGCAGTTCCTCCAG
GAGGAAGCAGGCGCCGACAGTGGACAGGTCAGGACCATTGCTTTTGCTAG
TATCGAAAACACTTCGATGAGGGGCAGGGTGGAAGAAATTTTTTGCAGAA
GTCGTTATACTCTTTTCACCCTCGTGACGTTCATCTCTTTGTTTCAATTT
TTGTAGCGATCAAGACGCGGAGGCGAGGCCAGGGACTGAGGAGAAGAAGC
CTGCCTCAGGAGCGTCCGATGAGAACGCGGTCGTGATGATGGCGAGATCG
ATGGGCATGCAGATGGTTCCGGCCAACAGCAGCGGCTATTACCCGCCTGT
CGGTGCCAGCCCGGCCCTGGCCAATCAAGTTTTCGGGGGTGTCAATGCGG
TGCCTCTCGCGGGCGGCTTGATGTCTCCCCAGGGCGGATTTATTCACGCC
TTTGCCCAGCCCGCCGGGGGTCACCCTTTTTCGCAGGCGCAAGCCGGGCA
ACCCAGCGCTGTGCATCCCTTTGTGTACCGCTGAATCATCGTGTGGTGGC
TGTTGCGGATATACCCCGTTGGGTACGCGGGGTGACCAACGTGTTGCGGC
GCACAGCAGTGGAGAGCGTGGCCATATTTTTTTTAGTTTCAGTTTTCAAC
ACTTACGTCGAACACGACTTTTGTTAGTGTCGTGCGTCTCGCCGATTGTA
GCTTTCCGGGCTACCGCCCACCTCCTCAACCACGTAGCGATTTCGAGAGA
TTGCGTTTGAAATTGCATTTTTACAGGCAATAGGCGGGCGTTCGCGGATG
TCTCTTCGCCGATGAATTGTGGCCGCTTCACACTTGCCTCAACGGAGTGC
TCGGTGTCTCATTTTTGTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:306182..308751-

>mRNA_P-littoralis_Contig193.87.2 ID=mRNA_P-littoralis_Contig193.87.2|Name=mRNA_P-littoralis_Contig193.87.2|organism=Pylaiella littoralis U1_48|type=CDS|length=999bp|location=Sequence derived from alignment at P-littoralis_Contig193:306182..308751- (Pylaiella littoralis U1_48)
ATGAAAGATTGCGTTCGGGATTTGGTATCTAGCTCTGAGTTCCGGCAATG
GTTCGATGAGGCCGCTGTCAGCGGTGTCTCGAGGATCAACAAAAGCAAAG
TAGAGAACCTAACGAAGACCTCGAAGGAGGTCGTGGATGCCGCCAAGTTG
GCGGGGGTGAACCTCCTGTCGACCTCGATCCAGAAGCCTCTGGCGAAACA
TTCAAAGGAGATTGATGGTCTGGGCAAGCAGGTCAAAGCAATGGAAGGCG
ACGTGAAGAAGATGCAAACTTCCATCAAGGACCCGAAGGCGGGCGTGACC
ACTGCCGTGGGCAAGGCGAAAACATCCCAGAAGGGAATGTCAGAAACGAA
GATGCTGGAGATTGTCAAGGCTTCCGACCTGAAGCGTGCCGCAGATCTGA
AGATCCTCATCGAGAGTGAGGTTCGAGCCATCAAGGCCGACCTCCTGGCA
GCGTACGAGGAAAAGGTCGCGAGGCTGGAAGCTGCCATGAAGGCGGAGAA
TGCCCAGGTCCTGGCGAACATGGCAAATGGCCTTCACTACGTCGTGCGAG
AGGTCGTATCCCAGGTCGAAAGTGCTGGAAAAAAGCGCTCGTCCACCACC
GATCTCACGCCATCCCCGCCGAGCACCAGGCGCAGTTCCTCCAGGAGGAA
GCAGGCGCCGACAGTGGACAGCGATCAAGACGCGGAGGCGAGGCCAGGGA
CTGAGGAGAAGAAGCCTGCCTCAGGAGCGTCCGATGAGAACGCGGTCGTG
ATGATGGCGAGATCGATGGGCATGCAGATGGTTCCGGCCAACAGCAGCGG
CTATTACCCGCCTGTCGGTGCCAGCCCGGCCCTGGCCAATCAAGTTTTCG
GGGGTGTCAATGCGGTGCCTCTCGCGGGCGGCTTGATGTCTCCCCAGGGC
GGATTTATTCACGCCTTTGCCCAGCCCGCCGGGGGTCACCCTTTTTCGCA
GGCGCAAGCCGGGCAACCCAGCGCTGTGCATCCCTTTGTGTACCGCTGA
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