mRNA_P-littoralis_Contig193.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.53.1
Unique NamemRNA_P-littoralis_Contig193.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 8.370e-23
Identity = 56/106 (52.83%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 TDNPVMVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
            T+N  M N+DI+  +AQF  DKQFLFFA VSRSWR+AWG R  VTS++T ++T  QL +SF  GL R     C+  ARA   G+L +LRWA E GC W  S   AA
Sbjct:   15 TENVAMTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARA---GNLDLLRWATEQGCPWTRSLSAAA 117          
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.100e-20
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   22 NIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
            N+D++R + +F  +KQFLFFA VSR+WREAWG R AVTS++T  S+V QL +SFE GL R    LC AIAR    G+L +LR A  +GC WN  T + A
Sbjct:   60 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARL---GNLELLRSARGSGCAWNGLTFSEA 155          
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.030e-18
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   25 IDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTC 309
            +DI+  VA+F  D Q+LFFA VSR WR+ WG+R  VT  +T+ ++VPQL  SFE GL R++AA+C  +A     G L +LR A   GC+WN +TC
Sbjct:    7 VDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGL-RRTAAVCETVAGL---GRLDLLRRARAMGCQWNENTC 97          
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.500e-15
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   13 VMVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTC 309
            V  N+ ++  +A+F  D Q LFFA VSR WR+ WG+R  VT  +T+ ++VPQL  SFE GL R++AA+C  +A     G L +L+ A   GC WN +TC
Sbjct:   21 VTANVYLLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGL-RRTAAVCETVAGL---GRLDLLQRARAMGCPWNENTC 115          
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 5.380e-15
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   25 IDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTC 309
            +DI+  V +F  D Q+LFFA VSR WR+ WG+R  VT  +T+ ++V QL  SFE GL R++AA+C  +A     G L +LR A   GC WN +TC
Sbjct:    9 VDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGL-RRTAAVCETVAGL---GRLDLLRRARAMGCPWNENTC 99          
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 7.970e-9
Identity = 45/122 (36.89%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   43 VAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAAL-------------------------CVAIAR----AAKAGHLAVLRWAIENGCR-WNSSTCTAA 318
            +A+F GDKQ+LFFA VS+ WR AWG R  VTSY T Y+++ QL +S + GL ++                             C  ++R    AA  GHL  L WA   G R W+ S  +AA
Sbjct:    1 MAEFVGDKQYLFFAPVSQDWRSAWGGRPTVTSYATPYTSLSQLRWSLDCGLKKEKGVQNGRVLSSLARTGDVGLLEVAHKKLGCRLMSRFFVVAAGCGHLDALIWATRTGDRSWDVSASSAA 122          
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.760e-8
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   49 QFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
            +F G +Q+LFFA VSR+WR+AW  R   T  +T+ + VPQL  SFE GL R+S  +C  IA   +   L   R   E  C W+  TC+ A
Sbjct:    2 EFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRST-VCQDIAALGRLDLLVSAREEYE--CPWDEDTCSYA 88          
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.570e-7
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    7 NPVMVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
            NP+M   DI+  + +F G +Q++FFA VSR+WR+AW  R   T   T+ + VPQL  SF+ GL  +S  +C  IA   +   L   R   ++ C W+  TC+ A
Sbjct:    3 NPLMQP-DIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRST-VCRDIAALGRLDLLVSARE--QHECPWDEETCSCA 102          
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5JDL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.390e-6
Identity = 43/108 (39.81%), Postives = 52/108 (48.15%), Query Frame = 1
Query:    1 TDNPVMVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWG--RRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
            T+N  + N+DI+R +A+F  DKQFLFFA VSRSWR   G  RR                   F  GL R     C   ARA    +L +LRWA + G  W  S   AA
Sbjct:   18 TENVAVTNMDIVRGLARFVADKQFLFFAPVSRSWRARGGSGRR-------------------FACGLARGGVDWCSTTARAV---NLDLLRWATKQGYPWTRSLSAAA 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FH49_ECTSI8.370e-2352.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPZ6_9PHAE2.100e-2053.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0J7_9PHAE7.030e-1849.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0K8_9PHAE4.500e-1545.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI5.380e-1547.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGC4_ECTSI7.970e-936.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8W5_ECTSI1.760e-843.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM75_9PHAE1.570e-738.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDL5_9PHAE2.390e-639.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:184687..185733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FMP0
PFAMsAnk_2,Ank_4
Model size774
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000389
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size759
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789928.031337-UTR-P-littoralis_Contig193:184686..1847011680789928.031337-UTR-P-littoralis_Contig193:184686..184701Pylaiella littoralis U1_48UTRP-littoralis_Contig193 184687..184701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789928.0445635-CDS-P-littoralis_Contig193:184701..1849201680789928.0445635-CDS-P-littoralis_Contig193:184701..184920Pylaiella littoralis U1_48CDSP-littoralis_Contig193 184702..184920 +
1680789928.0550287-CDS-P-littoralis_Contig193:185193..1857331680789928.0550287-CDS-P-littoralis_Contig193:185193..185733Pylaiella littoralis U1_48CDSP-littoralis_Contig193 185194..185733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.53.1prot_P-littoralis_Contig193.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 184702..185733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.53.1

>prot_P-littoralis_Contig193.53.1 ID=prot_P-littoralis_Contig193.53.1|Name=mRNA_P-littoralis_Contig193.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
MVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVP
QLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTA
AAEGGHLVVLQWARKNGCSWGSSTCSAAAAGGHLDVLQWARANGCGWGSS
TSFSAAGGGHLGVLQWARDHGCPWNAWTCCRAAGGGHMSVLQWARANNCP
WNENTCAAAAKGGHLAALQWARQNDCPWDERTCTAAAEGGHLAILKWAKA
NGC
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mRNA from alignment at P-littoralis_Contig193:184687..185733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.53.1 ID=mRNA_P-littoralis_Contig193.53.1|Name=mRNA_P-littoralis_Contig193.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig193:184687..185733+ (Pylaiella littoralis U1_48)
ACGGACAACCCCGTAATGGTCAACATCGACATCATTCGTATTGTTGCACA GTTCACGGGAGATAAGCAGTTCCTCTTCTTCGCACTCGTGTCTAGAAGCT GGCGAGAAGCGTGGGGGCGACGTCTGGCCGTCACGAGCTACATCACGAGC TACTCTACGGTACCCCAGCTTCTCTTCAGCTTCGAGTTCGGCCTGCTACG GAAAAGCGCCGCTCTGTGCGTTGCGATAGCGCGCGTTGGCGATCTGAACC TTCTGCAATATGCCCGGTTGAAGGGTTGTCCCTGGGATGCGCGCACATGT TCTGAGGCAGCCAGAGCGGGGCACATACACGTCCTCCGGTGGGCCAGAAT AGAAGCGCTCGAGCAGACTACATTTGAGATCTCGAAACAGAAGCGCTGTC CTTGGGATGAACGCACCTGTTCTGCGGCTGCGGAAGGTGGGCATCTACCC GTTCTGCAGTGGGCTAGAAGAAATGGCTGTCCCTGGGGTCCCTTGACATG TTTCGAGGCTGCCAAAGCAGGCCATCTCGCCGTGCTCCGATGGGCTATAG AAAACGGCTGTCGGTGGAATTCGTCCACGTGTACCGCCGCCGCGGAAGGT GGCCATCTAGTCGTACTCCAATGGGCTCGAAAAAACGGTTGCTCTTGGGG GTCGTCGACGTGCTCTGCGGCTGCTGCAGGCGGGCATCTCGACGTTCTTC AGTGGGCTAGAGCAAACGGTTGCGGCTGGGGGTCATCGACGTCTTTTTCG GCAGCCGGAGGAGGGCACCTGGGCGTGCTTCAATGGGCTAGAGACCATGG ATGTCCCTGGAACGCATGGACGTGCTGCCGAGCAGCCGGGGGGGGTCACA TGTCCGTCCTTCAGTGGGCTCGAGCAAATAACTGTCCATGGAACGAGAAT ACCTGCGCTGCGGCCGCCAAGGGCGGGCATCTTGCTGCGCTTCAGTGGGC GCGACAGAATGACTGTCCCTGGGACGAGCGCACGTGCACGGCGGCTGCCG AGGGGGGGCATCTGGCGATTCTCAAGTGGGCCAAAGCAAATGGTTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:184687..185733+

>mRNA_P-littoralis_Contig193.53.1 ID=mRNA_P-littoralis_Contig193.53.1|Name=mRNA_P-littoralis_Contig193.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig193:184687..185733+ (Pylaiella littoralis U1_48)
ATGGTCAACATCGACATCATTCGTATTGTTGCACAGTTCACGGGAGATAA
GCAGTTCCTCTTCTTCGCACTCGTGTCTAGAAGCTGGCGAGAAGCGTGGG
GGCGACGTCTGGCCGTCACGAGCTACATCACGAGCTACTCTACGGTACCC
CAGCTTCTCTTCAGCTTCGAGTTCGGCCTGCTACGGAAAAGCGCCGCTCT
GTGCGTTGCGATAGCGCGCGCTGCCAAAGCAGGCCATCTCGCCGTGCTCC
GATGGGCTATAGAAAACGGCTGTCGGTGGAATTCGTCCACGTGTACCGCC
GCCGCGGAAGGTGGCCATCTAGTCGTACTCCAATGGGCTCGAAAAAACGG
TTGCTCTTGGGGGTCGTCGACGTGCTCTGCGGCTGCTGCAGGCGGGCATC
TCGACGTTCTTCAGTGGGCTAGAGCAAACGGTTGCGGCTGGGGGTCATCG
ACGTCTTTTTCGGCAGCCGGAGGAGGGCACCTGGGCGTGCTTCAATGGGC
TAGAGACCATGGATGTCCCTGGAACGCATGGACGTGCTGCCGAGCAGCCG
GGGGGGGTCACATGTCCGTCCTTCAGTGGGCTCGAGCAAATAACTGTCCA
TGGAACGAGAATACCTGCGCTGCGGCCGCCAAGGGCGGGCATCTTGCTGC
GCTTCAGTGGGCGCGACAGAATGACTGTCCCTGGGACGAGCGCACGTGCA
CGGCGGCTGCCGAGGGGGGGCATCTGGCGATTCTCAAGTGGGCCAAAGCA
AATGGTTGT
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