mRNA_P-littoralis_Contig193.53.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI) HSP 1 Score: 105 bits (263), Expect = 8.370e-23 Identity = 56/106 (52.83%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 1 TDNPVMVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
T+N M N+DI+ +AQF DKQFLFFA VSRSWR+AWG R VTS++T ++T QL +SF GL R C+ ARA G+L +LRWA E GC W S AA
Sbjct: 15 TENVAMTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARA---GNLDLLRWATEQGCPWTRSLSAAA 117
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 2.100e-20 Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 1
Query: 22 NIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
N+D++R + +F +KQFLFFA VSR+WREAWG R AVTS++T S+V QL +SFE GL R LC AIAR G+L +LR A +GC WN T + A
Sbjct: 60 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARL---GNLELLRSARGSGCAWNGLTFSEA 155
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 7.030e-18 Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 25 IDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTC 309
+DI+ VA+F D Q+LFFA VSR WR+ WG+R VT +T+ ++VPQL SFE GL R++AA+C +A G L +LR A GC+WN +TC
Sbjct: 7 VDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGL-RRTAAVCETVAGL---GRLDLLRRARAMGCQWNENTC 97
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.500e-15 Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 13 VMVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTC 309
V N+ ++ +A+F D Q LFFA VSR WR+ WG+R VT +T+ ++VPQL SFE GL R++AA+C +A G L +L+ A GC WN +TC
Sbjct: 21 VTANVYLLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGL-RRTAAVCETVAGL---GRLDLLQRARAMGCPWNENTC 115
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 5.380e-15 Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 25 IDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTC 309
+DI+ V +F D Q+LFFA VSR WR+ WG+R VT +T+ ++V QL SFE GL R++AA+C +A G L +LR A GC WN +TC
Sbjct: 9 VDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGL-RRTAAVCETVAGL---GRLDLLRRARAMGCPWNENTC 99
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 7.970e-9 Identity = 45/122 (36.89%), Postives = 60/122 (49.18%), Query Frame = 1
Query: 43 VAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAAL-------------------------CVAIAR----AAKAGHLAVLRWAIENGCR-WNSSTCTAA 318
+A+F GDKQ+LFFA VS+ WR AWG R VTSY T Y+++ QL +S + GL ++ C ++R AA GHL L WA G R W+ S +AA
Sbjct: 1 MAEFVGDKQYLFFAPVSQDWRSAWGGRPTVTSYATPYTSLSQLRWSLDCGLKKEKGVQNGRVLSSLARTGDVGLLEVAHKKLGCRLMSRFFVVAAGCGHLDALIWATRTGDRSWDVSASSAA 122
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 1.760e-8 Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 49 QFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
+F G +Q+LFFA VSR+WR+AW R T +T+ + VPQL SFE GL R+S +C IA + L R E C W+ TC+ A
Sbjct: 2 EFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRST-VCQDIAALGRLDLLVSAREEYE--CPWDEDTCSYA 88
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 1.570e-7 Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 7 NPVMVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
NP+M DI+ + +F G +Q++FFA VSR+WR+AW R T T+ + VPQL SF+ GL +S +C IA + L R ++ C W+ TC+ A
Sbjct: 3 NPLMQP-DIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRST-VCRDIAALGRLDLLVSARE--QHECPWDEETCSCA 102
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Match: A0A6H5JDL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 2.390e-6 Identity = 43/108 (39.81%), Postives = 52/108 (48.15%), Query Frame = 1
Query: 1 TDNPVMVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWG--RRLAVTSYITSYSTVPQLLFSFEFGLLRKSAALCVAIARAAKAGHLAVLRWAIENGCRWNSSTCTAA 318
T+N + N+DI+R +A+F DKQFLFFA VSRSWR G RR F GL R C ARA +L +LRWA + G W S AA
Sbjct: 18 TENVAVTNMDIVRGLARFVADKQFLFFAPVSRSWRARGGSGRR-------------------FACGLARGGVDWCSTTARAV---NLDLLRWATKQGYPWTRSLSAAA 103 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig193.53.1 >prot_P-littoralis_Contig193.53.1 ID=prot_P-littoralis_Contig193.53.1|Name=mRNA_P-littoralis_Contig193.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp MVNIDIIRIVAQFTGDKQFLFFALVSRSWREAWGRRLAVTSYITSYSTVPback to top mRNA from alignment at P-littoralis_Contig193:184687..185733+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig193.53.1 ID=mRNA_P-littoralis_Contig193.53.1|Name=mRNA_P-littoralis_Contig193.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig193:184687..185733+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig193:184687..185733+ >mRNA_P-littoralis_Contig193.53.1 ID=mRNA_P-littoralis_Contig193.53.1|Name=mRNA_P-littoralis_Contig193.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig193:184687..185733+ (Pylaiella littoralis U1_48)back to top |