mRNA_P-littoralis_Contig193.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.34.1
Unique NamemRNA_P-littoralis_Contig193.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:100370..102257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size370
Hectar predicted targeting categoryother localisation
Exons4
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.9091327-CDS-P-littoralis_Contig193:100369..1004651680789927.9091327-CDS-P-littoralis_Contig193:100369..100465Pylaiella littoralis U1_48CDSP-littoralis_Contig193 100370..100465 -
1680789927.921007-CDS-P-littoralis_Contig193:100876..1010351680789927.921007-CDS-P-littoralis_Contig193:100876..101035Pylaiella littoralis U1_48CDSP-littoralis_Contig193 100877..101035 -
1680789927.9295757-CDS-P-littoralis_Contig193:101787..1018771680789927.9295757-CDS-P-littoralis_Contig193:101787..101877Pylaiella littoralis U1_48CDSP-littoralis_Contig193 101788..101877 -
1680789927.9385219-CDS-P-littoralis_Contig193:102233..1022571680789927.9385219-CDS-P-littoralis_Contig193:102233..102257Pylaiella littoralis U1_48CDSP-littoralis_Contig193 102234..102257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.34.1prot_P-littoralis_Contig193.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 100370..102257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.34.1

>prot_P-littoralis_Contig193.34.1 ID=prot_P-littoralis_Contig193.34.1|Name=mRNA_P-littoralis_Contig193.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
DASVNEPQVVILMRGRERAEQCLECLKDLARVVNPAVQANFAPGLQRVPR
DHLSEEQVIIATPDFCSMSSRKRLTFGDTSVLVVVDVSDAKKEAVGGLRD
CWESIRQDLPEGYQSMTFCSEPP
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mRNA from alignment at P-littoralis_Contig193:100370..102257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.34.1 ID=mRNA_P-littoralis_Contig193.34.1|Name=mRNA_P-littoralis_Contig193.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1888bp|location=Sequence derived from alignment at P-littoralis_Contig193:100370..102257- (Pylaiella littoralis U1_48)
GATGCCTCGGTCAACGAGCCGCAGGTGTGAAGGCAGGAATGAAGTAGGAG
CTCAGGGGAGGGTAGTAAAACAGATACATGAACGCATGGGCACGTAGTTC
AGCCACGGCAGGTTTAGCGAAATTTCTGCGTGGGTTGGTATTCTTCCATC
ATGGTTCGACTTTTCGGCGAACATATGATACGCACCAGGTATTGTTTATG
AAGGAGGCAGTTCCCTCCCTGACGCCGCTGCCGCCTTCAGAGCCCTCTCT
TCTTGTATCCCCTCCGACTCACCACGGCATGTATTGGACGAAGTACGGTA
GGGAGAAAGACGATACAGCCAGCATGATTAAACCTTCCTCTATCGTGCAC
GCCTTGCGATGATCTTCTTTTGTGCTACAGGTTGTGATCCTCATGAGGGG
ACGTGAACGCGCGGAGCAGTGCCTGGAGTGCCTGAAAGATTTGGCTCGGG
TCGTGAACCCCGCTGTGCAGGTAAATCCTTTTTGATTCGGTTCGGGTGGG
TTCGCTTTGGGGCGTTCCATACTCCACTCGAGACGAGAAACACAAATGCA
CCCCGTGCACCGGTTTCAAAGGTCGGTGTAGATCACAGCGGGAAAGAGAC
GAAACCAGAGCCGTTAAAGGGGGGCTTTAGGTAGATGTCAAGAAGGCAGC
TCCGAAATCTTACCCTTGGTATCGGAACCGCCTTCTTCGGAGAGCAGCGA
GATAAATAAAAGCGACACTTCGTCAGCGGGGCGTCCACACTCCATGCAAT
CTCAGGGGACATGGTGTTGCAGTCTGCTTTCATCGAGTGTGGGTGCACAT
AGTGGAACAACAAGGCACCCGTCGCTGCGATAAAAAACCTATCCCACCAC
ATGAAGAGCTTTTCAATGCATAAAGCGGCGTTGTATCTCTTGATCGTTTC
GATTGCTTTCACAAACAGTGTAGCTGAATGCTTGGTGGCAGTATCAGGTG
TGGTGTCAAGACCTAGTCGCATCGCACGGTTGACCAGGCCATGAGCTGTG
AATGGTACTTTTTCAGCCAGTCCCTTATATGAGCCACAGGGTGTGAGTAA
ACAAACAAACATGCATGCATGCGCATGAATAAATTTGTCTCGGTTCCGAC
TTCCACTTTCTCGGGAGCTATGTAGACCTCCAATAGCAAACAGCCAGTGC
ATCGAAATCATTTCCTTCAAATGCTTTCTGATTACTTGCTCCTACCTGAA
ACCCCCTCCACACACCTGGAAGGCTAACTTCGCCCCAGGACTTCAGCGAG
TACCAAGAGACCATTTGTCTGAAGAGCAAGTGATCATCGCTACTCCGGAT
TTCTGCAGCATGTCGAGCAGGAAGAGGCTAACCTTCGGCGACACAAGCGT
TCTGGTCGTGGTCGATGTCTCGGACGCCAAGGTAATCGGACTGGCGATGA
AATTGATGGCGTTTGGCCCGTTCTAGTTTTGTTGTGCAGCAAAAACTACG
TTGCATGGCTCAACCACTGTTTTTCAGAATCGGGGGATATCGCCTTGCAT
GTTGCTTCAAGTTCTGCTCATGTAACGTTTGGATTCTCTCCCGATGCTAT
TTAGTTGGAATCTCACGTCGTATTGCACTTTATACGGATGATTTCAACGT
TTGTTTCCGATCGTCACAAACGTTACGACTCACTGCAGCGTTCTCCATGG
CAGTTTGTGCTTACATCGCAAAACCGAACGCATGTATAGCAATACTACGC
CAGCGTTGCCAGGAGATATTTTCGCGTGGGATGATAAAATTGCATCCGGC
TGGCCCCCTTGCCAACCATACACCCCCGTGCCTGCTTTACAGAAGGAAGC
TGTCGGTGGTCTTCGAGATTGCTGGGAGAGCATCAGGCAGGATTTGCCAG
AAGGATACCAGTCGATGACATTTTGTTCGGAACCTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:100370..102257-

>mRNA_P-littoralis_Contig193.34.1 ID=mRNA_P-littoralis_Contig193.34.1|Name=mRNA_P-littoralis_Contig193.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig193:100370..102257- (Pylaiella littoralis U1_48)
GATGCCTCGGTCAACGAGCCGCAGGTTGTGATCCTCATGAGGGGACGTGA
ACGCGCGGAGCAGTGCCTGGAGTGCCTGAAAGATTTGGCTCGGGTCGTGA
ACCCCGCTGTGCAGGCTAACTTCGCCCCAGGACTTCAGCGAGTACCAAGA
GACCATTTGTCTGAAGAGCAAGTGATCATCGCTACTCCGGATTTCTGCAG
CATGTCGAGCAGGAAGAGGCTAACCTTCGGCGACACAAGCGTTCTGGTCG
TGGTCGATGTCTCGGACGCCAAGAAGGAAGCTGTCGGTGGTCTTCGAGAT
TGCTGGGAGAGCATCAGGCAGGATTTGCCAGAAGGATACCAGTCGATGAC
ATTTTGTTCGGAACCTCCC
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