mRNA_P-littoralis_Contig193.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.24.1
Unique NamemRNA_P-littoralis_Contig193.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:46689..48936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size269
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.8574154-CDS-P-littoralis_Contig193:46688..467701680789927.8574154-CDS-P-littoralis_Contig193:46688..46770Pylaiella littoralis U1_48CDSP-littoralis_Contig193 46689..46770 +
1680789927.8668118-CDS-P-littoralis_Contig193:48751..488881680789927.8668118-CDS-P-littoralis_Contig193:48751..48888Pylaiella littoralis U1_48CDSP-littoralis_Contig193 48752..48888 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.8790066-UTR-P-littoralis_Contig193:48888..489361680789927.8790066-UTR-P-littoralis_Contig193:48888..48936Pylaiella littoralis U1_48UTRP-littoralis_Contig193 48889..48936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.24.1prot_P-littoralis_Contig193.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 46689..48888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.24.1

>prot_P-littoralis_Contig193.24.1 ID=prot_P-littoralis_Contig193.24.1|Name=mRNA_P-littoralis_Contig193.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
LAHQYTAIIFQKRSLATAVCLESLAPEGQEREGDPATERETTAEHSRKTS
VYAQRQRGFDWSQGPACASGAR*
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mRNA from alignment at P-littoralis_Contig193:46689..48936+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.24.1 ID=mRNA_P-littoralis_Contig193.24.1|Name=mRNA_P-littoralis_Contig193.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2248bp|location=Sequence derived from alignment at P-littoralis_Contig193:46689..48936+ (Pylaiella littoralis U1_48)
CTAGCCCACCAGTACACCGCTATTATCTTCCAGAAGAGAAGCCTTGCTAC
CGCTGTTTGCCTGGAGAGCTTGGCGCCAGAAGGTTGGTGGTGTGGGAGAG
GGTGTTACGAGCCCGTTTTTCGCACTTCTGTGCGATATGTGTTGTCATCC
CATGTTCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGCCCATCGACG
GGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCT
TCTGCGGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGCGGTCC
CTACCCTCGTCGGCGAAGCCGAATCTGATTTTACTAACAGCATAGCCGCT
TTCAAAGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCCGTTCCTC
TGCATCTAGTGGTTAACGAGGGACCACTAGTCCACCGGGGCGACCGGTGT
ATGTCCGATCATGAATCATACTCCGAGTGGAGTACGCATGTGCCTGCCTT
TCGCAATCCTGTTGTGTCTGAGTCCTTCGTTGACTCACGGTTCCCGACTG
AAGGTACACAGCAGTGCAACAATTTGCGCCAGTGACGTCACCCGTGGTAG
TGCCAGACCCATTCAGAGGACGCTGCAGATCATTCGAGTAAGATTGACTT
CGTCGTCTCGCTCGACCGGTAGGAAGGGGTGAACTAAAGACTCATTTCAA
TCGCAATGTACTGGGTATGCTGGTGTCCTCAATGCTTGAGTTCAGCAGTA
CGTATCACACTCACACAATGCGCCGGTAGTCACTACCCTACATCCAGTAC
TTCGAAGCACTTCATATCACACATACAATATACTTCCTCCCTCGGCTGCT
CCCCGGCCGCGGTCACCCAACCTAGTGGGTCCCTCGTGGACACACCGGGC
TCTACCAAAGTAGACAGGGTAGTGTGGTCAGACCCTACTCGGCGCACGCC
GAGGCTGGGTAGGTGATGGAGGTGACGAATTGCAATGCAGCAGTCCGGAC
CAACTATGGTCTGGTCTCCGCGACAGTCAAACGGTCTGCGGCAGCTGTGT
CGACACATCACCGCGGAAATCGTGGAACTCGTAGCCTGAGGAGCAGAGAC
ACTAGGAGGCACCACGTTAGTAAGCACCCTCGTCGACCTTCACGTCGACG
CTGGCCGGGAGTGTCGTCCCCAGCCCGCCTGAACGTAGACGAGTACCGAG
CTTGGCAAAGATGGATGGAACGGAGGAAAAGTGCAGCTCGAAAGAAACGG
AAGCGAAACCCCAACGGTACCATATACTCCGTAGGTTACTTCCGATGAGG
GCGTGTCTTGGAAAAAAAAACGAGGTGTGGAACGGGGAACGTGGAACGTA
GAATAGTTCTCTGATTGGCCAACCTCAGAAAAAAACGTTCCTGGAAAATT
TTTCGGCCACCGGGGTTCCACATTTCTCGTTCCCTCCTCCAAAATAATTG
GAAGGCCTCCGTTCCTTAAAATTTTCCAATAGTCTGTGTGGAACGGGCTG
CTGGGGTGAAGAAGTTTCAAAGAAAAAGGGCGATGACGTGTGTACGGCGT
CTCAACCTCGAAGCACACATTGCTCTCCCACACACACACTCACAGCACAC
CAGCAGGCCAGTGATATATTTTATGTGACAGACCCGGGCCATTCACTGGC
ACCTGGTTCCACATTCCACCTTTCGGGACAGATGTTTTTTTTTTCCAAAA
GACACAACGCGTGGAACAGGGAACGAGGAATTCTAGGTTCCACGTTCCCC
GTTCCACACCTCGTTTTCTTTTCCAAGACACGCCCTGAGGGTGGGGCCTA
CGTAATTTTTTTGGACTCGAACATCGAACATCGAACAAGCGGCGTAATCA
TGTGATTGGCGGTGAAAATAAAATAAAACAAAAGATGTTAGGGTGTTCGA
GTTTTTCTACGCCGGATCTTCCAGGGGCGATTCCGCCTAAAACTCTAACA
TCTTTCACAAAAACCCGAAAACCTAGCATCGAACCTACAGTCCCGTGGGC
TATTGACGAAAGAAATGTATTGGTAACAACAAAAGAAGACCCGCGTCTAT
CGCTCCCTCTCAGGACAAGAGAGAGAGGGCGACCCGGCGACCGAGAGAGA
GACGACCGCAGAGCATAGCCGCAAAACAAGTGTCTATGCCCAGCGACAGC
GAGGTTTCGACTGGTCTCAGGGCCCCGCGTGCGCAAGCGGGGCCAGGTGA
GACGCAATCACACGGGCGTGGCTTCCTGTCGCAACCACACAGCAGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:46689..48936+

>mRNA_P-littoralis_Contig193.24.1 ID=mRNA_P-littoralis_Contig193.24.1|Name=mRNA_P-littoralis_Contig193.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig193:46689..48936+ (Pylaiella littoralis U1_48)
CTAGCCCACCAGTACACCGCTATTATCTTCCAGAAGAGAAGCCTTGCTAC
CGCTGTTTGCCTGGAGAGCTTGGCGCCAGAAGGACAAGAGAGAGAGGGCG
ACCCGGCGACCGAGAGAGAGACGACCGCAGAGCATAGCCGCAAAACAAGT
GTCTATGCCCAGCGACAGCGAGGTTTCGACTGGTCTCAGGGCCCCGCGTG
CGCAAGCGGGGCCAGGTGA
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