mRNA_P-littoralis_Contig193.24.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.24.2
Unique NamemRNA_P-littoralis_Contig193.24.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.24.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:46687..49204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons3
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.784696-UTR-P-littoralis_Contig193:46686..467701680789927.784696-UTR-P-littoralis_Contig193:46686..46770Pylaiella littoralis U1_48UTRP-littoralis_Contig193 46687..46770 +
1680789927.7963417-UTR-P-littoralis_Contig193:48751..488231680789927.7963417-UTR-P-littoralis_Contig193:48751..48823Pylaiella littoralis U1_48UTRP-littoralis_Contig193 48752..48823 +
1680789927.828207-UTR-P-littoralis_Contig193:49174..492041680789927.828207-UTR-P-littoralis_Contig193:49174..49204Pylaiella littoralis U1_48UTRP-littoralis_Contig193 49175..49204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.8092122-CDS-P-littoralis_Contig193:48823..488511680789927.8092122-CDS-P-littoralis_Contig193:48823..48851Pylaiella littoralis U1_48CDSP-littoralis_Contig193 48824..48851 +
1680789927.8178718-CDS-P-littoralis_Contig193:48884..491741680789927.8178718-CDS-P-littoralis_Contig193:48884..49174Pylaiella littoralis U1_48CDSP-littoralis_Contig193 48885..49174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.24.2prot_P-littoralis_Contig193.24.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 48824..49174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.24.2

>prot_P-littoralis_Contig193.24.2 ID=prot_P-littoralis_Contig193.24.2|Name=mRNA_P-littoralis_Contig193.24.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MPSDSEVSTGETQSHGRGFLSQPHSSRSSSSSSCVPIYMTSRSIGEHLRV
CVCRWNFFTRLFRNYKGPKKSDIELSACSMFDVRVHKNATSRRPGSTLID
LEPVL*
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mRNA from alignment at P-littoralis_Contig193:46687..49204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.24.2 ID=mRNA_P-littoralis_Contig193.24.2|Name=mRNA_P-littoralis_Contig193.24.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2518bp|location=Sequence derived from alignment at P-littoralis_Contig193:46687..49204+ (Pylaiella littoralis U1_48)
GTCTAGCCCACCAGTACACCGCTATTATCTTCCAGAAGAGAAGCCTTGCT
ACCGCTGTTTGCCTGGAGAGCTTGGCGCCAGAAGGTTGGTGGTGTGGGAG
AGGGTGTTACGAGCCCGTTTTTCGCACTTCTGTGCGATATGTGTTGTCAT
CCCATGTTCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGCCCATCGA
CGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTC
CTTCTGCGGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGCGGT
CCCTACCCTCGTCGGCGAAGCCGAATCTGATTTTACTAACAGCATAGCCG
CTTTCAAAGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCCGTTCC
TCTGCATCTAGTGGTTAACGAGGGACCACTAGTCCACCGGGGCGACCGGT
GTATGTCCGATCATGAATCATACTCCGAGTGGAGTACGCATGTGCCTGCC
TTTCGCAATCCTGTTGTGTCTGAGTCCTTCGTTGACTCACGGTTCCCGAC
TGAAGGTACACAGCAGTGCAACAATTTGCGCCAGTGACGTCACCCGTGGT
AGTGCCAGACCCATTCAGAGGACGCTGCAGATCATTCGAGTAAGATTGAC
TTCGTCGTCTCGCTCGACCGGTAGGAAGGGGTGAACTAAAGACTCATTTC
AATCGCAATGTACTGGGTATGCTGGTGTCCTCAATGCTTGAGTTCAGCAG
TACGTATCACACTCACACAATGCGCCGGTAGTCACTACCCTACATCCAGT
ACTTCGAAGCACTTCATATCACACATACAATATACTTCCTCCCTCGGCTG
CTCCCCGGCCGCGGTCACCCAACCTAGTGGGTCCCTCGTGGACACACCGG
GCTCTACCAAAGTAGACAGGGTAGTGTGGTCAGACCCTACTCGGCGCACG
CCGAGGCTGGGTAGGTGATGGAGGTGACGAATTGCAATGCAGCAGTCCGG
ACCAACTATGGTCTGGTCTCCGCGACAGTCAAACGGTCTGCGGCAGCTGT
GTCGACACATCACCGCGGAAATCGTGGAACTCGTAGCCTGAGGAGCAGAG
ACACTAGGAGGCACCACGTTAGTAAGCACCCTCGTCGACCTTCACGTCGA
CGCTGGCCGGGAGTGTCGTCCCCAGCCCGCCTGAACGTAGACGAGTACCG
AGCTTGGCAAAGATGGATGGAACGGAGGAAAAGTGCAGCTCGAAAGAAAC
GGAAGCGAAACCCCAACGGTACCATATACTCCGTAGGTTACTTCCGATGA
GGGCGTGTCTTGGAAAAAAAAACGAGGTGTGGAACGGGGAACGTGGAACG
TAGAATAGTTCTCTGATTGGCCAACCTCAGAAAAAAACGTTCCTGGAAAA
TTTTTCGGCCACCGGGGTTCCACATTTCTCGTTCCCTCCTCCAAAATAAT
TGGAAGGCCTCCGTTCCTTAAAATTTTCCAATAGTCTGTGTGGAACGGGC
TGCTGGGGTGAAGAAGTTTCAAAGAAAAAGGGCGATGACGTGTGTACGGC
GTCTCAACCTCGAAGCACACATTGCTCTCCCACACACACACTCACAGCAC
ACCAGCAGGCCAGTGATATATTTTATGTGACAGACCCGGGCCATTCACTG
GCACCTGGTTCCACATTCCACCTTTCGGGACAGATGTTTTTTTTTTCCAA
AAGACACAACGCGTGGAACAGGGAACGAGGAATTCTAGGTTCCACGTTCC
CCGTTCCACACCTCGTTTTCTTTTCCAAGACACGCCCTGAGGGTGGGGCC
TACGTAATTTTTTTGGACTCGAACATCGAACATCGAACAAGCGGCGTAAT
CATGTGATTGGCGGTGAAAATAAAATAAAACAAAAGATGTTAGGGTGTTC
GAGTTTTTCTACGCCGGATCTTCCAGGGGCGATTCCGCCTAAAACTCTAA
CATCTTTCACAAAAACCCGAAAACCTAGCATCGAACCTACAGTCCCGTGG
GCTATTGACGAAAGAAATGTATTGGTAACAACAAAAGAAGACCCGCGTCT
ATCGCTCCCTCTCAGGACAAGAGAGAGAGGGCGACCCGGCGACCGAGAGA
GAGACGACCGCAGAGCATAGCCGCAAAACAAGTGTCTATGCCCAGCGACA
GCGAGGTTTCGACTGGTCTCAGGGCCCCGCGTGCGCAAGCGGGGCCAGGT
GAGACGCAATCACACGGGCGTGGCTTCCTGTCGCAACCACACAGCAGCCG
TAGCAGCAGCAGCAGCAGCTGCGTACCGATATATATGACATCCCGGTCTA
TTGGGGAGCACTTGCGTGTGTGTGTGTGTCGGTGGAATTTTTTTACTCGC
CTTTTCCGAAATTACAAAGGACCCAAAAAGTCGGACATCGAACTATCCGC
TTGTTCGATGTTCGATGTTCGAGTCCACAAAAATGCAACCTCAAGGCGGC
CGGGAAGCACCTTGATCGACTTAGAGCCAGTGCTGTGAATGAGTTCTTCG
ATGGATTTGTGAGTCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:46687..49204+

>mRNA_P-littoralis_Contig193.24.2 ID=mRNA_P-littoralis_Contig193.24.2|Name=mRNA_P-littoralis_Contig193.24.2|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig193:46687..49204+ (Pylaiella littoralis U1_48)
ATGCCCAGCGACAGCGAGGTTTCGACTGGTGAGACGCAATCACACGGGCG
TGGCTTCCTGTCGCAACCACACAGCAGCCGTAGCAGCAGCAGCAGCAGCT
GCGTACCGATATATATGACATCCCGGTCTATTGGGGAGCACTTGCGTGTG
TGTGTGTGTCGGTGGAATTTTTTTACTCGCCTTTTCCGAAATTACAAAGG
ACCCAAAAAGTCGGACATCGAACTATCCGCTTGTTCGATGTTCGATGTTC
GAGTCCACAAAAATGCAACCTCAAGGCGGCCGGGAAGCACCTTGATCGAC
TTAGAGCCAGTGCTGTGA
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