prot_P-littoralis_Contig193.24.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig193.24.3
Unique Nameprot_P-littoralis_Contig193.24.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length633
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.24.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 539..597
e-value: 4.6E-9
score: 36.2
coord: 468..529
e-value: 1.0E-4
score: 22.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 309..356
e-value: 7.0E-11
score: 42.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 275..303
e-value: 7.6E-7
score: 29.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 348..380
e-value: 1.3E-7
score: 29.3
coord: 275..304
e-value: 2.7E-6
score: 25.2
coord: 312..346
e-value: 9.2E-7
score: 26.7
coord: 555..587
e-value: 2.1E-5
score: 22.4
coord: 484..517
e-value: 2.2E-4
score: 19.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 345..379
score: 12.517862
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 586..620
score: 9.240434
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 516..550
score: 9.240434
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 480..510
score: 8.944478
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 273..307
score: 10.972319
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 310..344
score: 11.465577
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 551..585
score: 11.23539
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 192..265
e-value: 4.8E-9
score: 37.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 454..631
e-value: 8.3E-44
score: 152.2
coord: 266..409
e-value: 1.9E-35
score: 124.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 395..417
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 272..621
coord: 200..392

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:53820..55990 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.24.3mRNA_P-littoralis_Contig193.24.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig193 52715..56614 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig193.24.3 ID=prot_P-littoralis_Contig193.24.3|Name=mRNA_P-littoralis_Contig193.24.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=633bp
MAAFVVSVPTVGDGLTLWTAASTAATATGVLYRRVAAMEACGGGFSRSVP
LASSAEHPPGSKKASAAAAAAAAVDIRRKAAAAEIRRTGATAPTKTRSAH
AFGLRRHSIGGGSSGGGGDSTAKGTTSRKGGGALPRFDRYEESSFCRRVE
RTDTRAWKAVLRDLDGAEAAAAAAAGTTNGGGDMGGGDGGTGGTIVTLSM
YSTCLQFMARAWRGREALLILDRIRAAGLVPDVRCLNCAITACGRSGLWE
QALLILRGSGDDDDEKDGAADRDVVSWTSAVDACGKAGKWREALELVEEM
QTDRVGIAPNVITYNAAIFACRRGKQWEKAVAMLQDMPKRGVTPNVASFS
AVISALGDAGRWREAVELFREMPSVGVAPDLKSFTATISACAGVNTRRSQ
RGGRPGKGTGGGVTGRAAKNVSGGGSAAAATAATAAAGSEAISSASATAG
TSTMSMARKDAWEEALALLREMPSAGVTPNLYHFNAAVSACAARGRWSEA
LSLLDEIERSANLSPDTFTFSAAIMACGNGLKFGQAVALLRDMPEKNVRP
NAFHYNAAISACAKCGRDQDASDLLSEMWEVGVTPDAFSYSSAITACRNG
NNLRRASELKQEMQERGIKDNGWVDSILSRVP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf