mRNA_P-littoralis_Contig193.24.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.24.3
Unique NamemRNA_P-littoralis_Contig193.24.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.24.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:52715..56614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0M5
PFAMsPPR,PPR_2,PPR_3
Model size3610
Max annot lvl2759|Eukaryota
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.51e-06
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size1899
COG categoryS
BRITEko00000,ko03016,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.7104385-UTR-P-littoralis_Contig193:52714..530351680789927.7104385-UTR-P-littoralis_Contig193:52714..53035Pylaiella littoralis U1_48UTRP-littoralis_Contig193 52715..53035 +
1680789927.7245677-UTR-P-littoralis_Contig193:53053..538191680789927.7245677-UTR-P-littoralis_Contig193:53053..53819Pylaiella littoralis U1_48UTRP-littoralis_Contig193 53054..53819 +
1680789927.759485-UTR-P-littoralis_Contig193:55990..566141680789927.759485-UTR-P-littoralis_Contig193:55990..56614Pylaiella littoralis U1_48UTRP-littoralis_Contig193 55991..56614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.7338004-CDS-P-littoralis_Contig193:53819..546911680789927.7338004-CDS-P-littoralis_Contig193:53819..54691Pylaiella littoralis U1_48CDSP-littoralis_Contig193 53820..54691 +
1680789927.7469752-CDS-P-littoralis_Contig193:54963..559901680789927.7469752-CDS-P-littoralis_Contig193:54963..55990Pylaiella littoralis U1_48CDSP-littoralis_Contig193 54964..55990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.24.3prot_P-littoralis_Contig193.24.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 53820..55990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.24.3

>prot_P-littoralis_Contig193.24.3 ID=prot_P-littoralis_Contig193.24.3|Name=mRNA_P-littoralis_Contig193.24.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=633bp
MAAFVVSVPTVGDGLTLWTAASTAATATGVLYRRVAAMEACGGGFSRSVP
LASSAEHPPGSKKASAAAAAAAAVDIRRKAAAAEIRRTGATAPTKTRSAH
AFGLRRHSIGGGSSGGGGDSTAKGTTSRKGGGALPRFDRYEESSFCRRVE
RTDTRAWKAVLRDLDGAEAAAAAAAGTTNGGGDMGGGDGGTGGTIVTLSM
YSTCLQFMARAWRGREALLILDRIRAAGLVPDVRCLNCAITACGRSGLWE
QALLILRGSGDDDDEKDGAADRDVVSWTSAVDACGKAGKWREALELVEEM
QTDRVGIAPNVITYNAAIFACRRGKQWEKAVAMLQDMPKRGVTPNVASFS
AVISALGDAGRWREAVELFREMPSVGVAPDLKSFTATISACAGVNTRRSQ
RGGRPGKGTGGGVTGRAAKNVSGGGSAAAATAATAAAGSEAISSASATAG
TSTMSMARKDAWEEALALLREMPSAGVTPNLYHFNAAVSACAARGRWSEA
LSLLDEIERSANLSPDTFTFSAAIMACGNGLKFGQAVALLRDMPEKNVRP
NAFHYNAAISACAKCGRDQDASDLLSEMWEVGVTPDAFSYSSAITACRNG
NNLRRASELKQEMQERGIKDNGWVDSILSRVP*
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mRNA from alignment at P-littoralis_Contig193:52715..56614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.24.3 ID=mRNA_P-littoralis_Contig193.24.3|Name=mRNA_P-littoralis_Contig193.24.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3900bp|location=Sequence derived from alignment at P-littoralis_Contig193:52715..56614+ (Pylaiella littoralis U1_48)
CGAAAAAATAGCCCTTATCGGAAGTAACCTATCTGATTTGACTGTGGGTG
ATCATAGTCCATATATTTTATTTTTATTTATTTTTTCCTCCTAGCACGAT
ATGTGCCTGGTTTGTGACCACAGGCTAGACTGCGGCGGTAGTGAGCTTAT
GTGAGAATCAACAACATATCATAGACGTGCATGAACGTTGGTGCTCTTCC
CGAGGTTGAACTAGTCACGAAAAGAGCCAGGTATATACCGCTGGATCATG
TGCAATCAGGACACCAAGTAAGAACGCTTGCTGTGCCGCATTCTGGCCGA
ATCTTCGTTGTCATTTTAGCTGTATGATAGGTTGGACAGCGTGTCTCATA
AACCAGCTTCCCCACACGGTGCTAAAGTTTCGATTCGTATTTCTAGTTTT
TCGAAGGACGACATGACATCAAAACCAGGTTGTATTACTCCGTCATAGTT
CGAGTACAAAACACGTACTTCGAAGTACTTCGTATTTTGCATTTCCCTCT
CAACAACCGAGTCTCGCTGTTTTTCTTGTTGTGTGTCAGCGTCGGAGCGC
GTTTCTCACCGAAAATTCCTACGCCGTGTGCTTCTTCTTTTGCAAAACAA
TTTTAAACCACTGCGTCAGTCCACAGCATTATTCGACCGTGTGAAGTCTA
CTAGGTGTGAGACGCGCACCCACCGAGTATTCCTCCAGTATATCCACCTA
TCCATACCGTTGTCAACAATCCCATTTTTCTTCCATGATACTCCGGCCAT
TCGTTGCTTTTGGTCGTGTTACAGCCGCGATATTACGAGTATCACCGGCA
GGGATGACATGTCTTATCCCCGCGTGGAACATGTTTCGTAGCTTGCTGTC
GATTTTTATCGATCATTCCACACACAAAACCTCCCTTCACAGCCCACGCC
CCTCGGGTTTTCCCCCCTCCACCCCCGTCTCGTTCTCTCGCACAGGTGTT
TTCCCACGCCACGCCTTGGGTAGCCTTCGATTCTGCCTAATGCGCACCCT
CCCCCCCAATAGAAAGTCAGCGGCTTGAAAGATTTTTTTTTTCGAAACTT
CGAGCGCTCGGCAAAGTACGTACGTACATCCTGACTTTTTTGCCGTCCGA
GAAGGATGGCGGCGTTTGTGGTGTCGGTTCCAACGGTTGGCGACGGGCTG
ACCCTCTGGACGGCCGCTTCGACGGCAGCCACTGCCACCGGCGTGCTTTA
CCGGCGCGTCGCGGCCATGGAGGCCTGCGGCGGTGGCTTCAGTCGCTCCG
TCCCCTTAGCTAGCTCAGCCGAGCACCCACCGGGATCAAAGAAAGCATCG
GCAGCAGCAGCAGCAGCAGCAGCAGTAGACATTAGGAGGAAGGCAGCAGC
AGCAGAAATCAGGAGGACGGGAGCAACAGCACCAACAAAAACGAGATCGG
CTCATGCGTTCGGGTTGCGTCGTCATTCCATCGGCGGCGGTAGCAGTGGC
GGTGGCGGTGACAGCACCGCAAAAGGTACCACTAGCAGGAAAGGCGGGGG
CGCGCTGCCCCGTTTCGACCGCTACGAGGAGAGCAGTTTTTGCCGGCGAG
TAGAGAGAACGGACACAAGAGCTTGGAAGGCGGTGCTTCGGGATTTGGAC
GGGGCGGAGGCTGCTGCTGCGGCGGCGGCGGGGACGACAAATGGCGGGGG
TGATATGGGTGGTGGAGATGGTGGAACAGGTGGTACAATCGTGACCCTGT
CGATGTACTCCACCTGCCTGCAATTCATGGCCCGCGCTTGGCGAGGGCGA
GAGGCGTTGCTGATCCTCGACCGCATCCGGGCGGCGGGGCTGGTGCCGGA
TGTGCGGTGCCTCAACTGCGCAATAACGGCGTGCGGAAGGAGCGGGCTGT
GGGAGCAGGCGTTGCTCATCCTCCGCGGCAGCGGCGACGACGATGACGAG
AAAGACGGCGCTGCAGACCGCGATGTCGTTTCTTGGACTTCCGCCGTGGA
CGCGTGTGGGAAGGCCGGGAAGTGGAGGTGATTGTTTTGTGTCTCTGTCG
TAGTAGACGGCGAATTAACTGCGTTCGAAGCCATCTTTTGTTTGTGTATG
TGTATGTTTTTTTTTCGACGCGTGAAAGTAGATTAGACTTTCTCAGTCAT
GCATCATCCCGCCCAAAGGCACAGCCATTATCCATCCTAGATATGAAAAT
GATAGCACAACACGCACACACGCAACCGCATGCCTCTATACCACCTAATC
GTTTGCCTTTTTACACGCGCGCCCATCGTGTTTCGGTGATGTGACACAGG
GAGGCGTTGGAGTTGGTCGAAGAGATGCAGACGGATAGAGTGGGGATAGC
ACCGAACGTGATCACCTACAATGCCGCCATCTTCGCCTGCCGAAGGGGCA
AGCAGTGGGAAAAAGCCGTCGCGATGCTGCAAGATATGCCGAAGCGGGGA
GTTACCCCGAACGTCGCCAGCTTTTCGGCGGTCATCTCGGCGTTGGGAGA
TGCTGGTCGCTGGAGGGAGGCTGTGGAGCTGTTCAGAGAGATGCCGAGTG
TCGGCGTCGCACCCGACCTTAAAAGCTTCACGGCCACCATCTCCGCTTGT
GCAGGCGTTAACACGCGCCGGTCACAGAGAGGGGGCCGCCCCGGCAAAGG
CACCGGCGGCGGCGTAACCGGCAGGGCAGCGAAGAATGTCAGCGGCGGTG
GGAGCGCGGCCGCCGCCACCGCTGCTACTGCTGCTGCCGGTTCGGAAGCA
ATATCAAGTGCTTCCGCGACAGCAGGAACATCAACGATGAGTATGGCGAG
GAAGGATGCCTGGGAAGAGGCCCTGGCGCTCCTTAGAGAAATGCCCTCGG
CCGGGGTTACCCCTAATTTGTATCATTTCAACGCGGCCGTGTCCGCCTGC
GCGGCACGCGGCCGATGGAGTGAGGCCCTTTCGCTCCTGGACGAAATTGA
GCGGTCGGCAAACTTGTCGCCTGATACTTTCACCTTCTCCGCAGCTATAA
TGGCGTGCGGTAACGGACTGAAGTTCGGACAGGCTGTAGCGCTTCTGCGG
GACATGCCTGAGAAGAACGTCAGGCCCAACGCTTTCCACTACAACGCGGC
CATCTCGGCCTGCGCGAAGTGCGGGCGAGACCAGGACGCCTCAGATCTGC
TGTCGGAGATGTGGGAGGTTGGCGTTACCCCTGATGCCTTCAGCTACTCC
TCCGCGATAACGGCGTGCAGGAACGGCAATAACTTGCGGAGGGCGTCGGA
GCTTAAGCAGGAGATGCAGGAAAGGGGCATCAAGGACAATGGTTGGGTTG
ATTCTATTTTGTCGCGGGTCCCCTAAGAGTCATACCGCTGTGGCATGTTG
CCGGGAATCTATTGCTTCGATAGGGGCGGGTACTGGAAGATTCATTTTCC
AGCAGTGCACGGAACTTCTGCTTTGATGGCATGTTTCGACGAACCTGGTG
GCTTTTCGATAAAGACGAGGAATACTTCAAGAGCCATGCTGTGTAGAATT
TCGGTTCTAGCATTTTTTGGCCTGTCGGCTTCTCTAGGGATAGTTGTACC
CCTCTTTCCGAAACCCGAACTGCAGGTTTTCGGCATGCGTATTTGTATAG
AGCACCAAAGCCAACGTAGTAGGCCACGTTTGACTGGTAACAATAAGATG
CGATATATGTTTTTTCTTTTGGCGAGAATGGGTTGCACCAAAAACGTTGA
CACGAATGTTCTCTGTGAAACTGCCCGGGACATGGAAGGCTTTTGTTTGA
CTATGCATCACGCGGCAGCCAAACAATCGCGTAGCTAGTGGGCCCGTCTG
TAAATTTGATATCTAGAGCCCAGTGACACATCACGGTCTCAAAGCGTGCG
GCCATTCGCCACTGCTCTGGGGGGCTATGGTGAACACCTGTGCTGCTTTG
GGTGTTTTTTTTTTTTATTACCGACAAAAGCTTTGGGCGGGTACCACTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:52715..56614+

>mRNA_P-littoralis_Contig193.24.3 ID=mRNA_P-littoralis_Contig193.24.3|Name=mRNA_P-littoralis_Contig193.24.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1899bp|location=Sequence derived from alignment at P-littoralis_Contig193:52715..56614+ (Pylaiella littoralis U1_48)
ATGGCGGCGTTTGTGGTGTCGGTTCCAACGGTTGGCGACGGGCTGACCCT
CTGGACGGCCGCTTCGACGGCAGCCACTGCCACCGGCGTGCTTTACCGGC
GCGTCGCGGCCATGGAGGCCTGCGGCGGTGGCTTCAGTCGCTCCGTCCCC
TTAGCTAGCTCAGCCGAGCACCCACCGGGATCAAAGAAAGCATCGGCAGC
AGCAGCAGCAGCAGCAGCAGTAGACATTAGGAGGAAGGCAGCAGCAGCAG
AAATCAGGAGGACGGGAGCAACAGCACCAACAAAAACGAGATCGGCTCAT
GCGTTCGGGTTGCGTCGTCATTCCATCGGCGGCGGTAGCAGTGGCGGTGG
CGGTGACAGCACCGCAAAAGGTACCACTAGCAGGAAAGGCGGGGGCGCGC
TGCCCCGTTTCGACCGCTACGAGGAGAGCAGTTTTTGCCGGCGAGTAGAG
AGAACGGACACAAGAGCTTGGAAGGCGGTGCTTCGGGATTTGGACGGGGC
GGAGGCTGCTGCTGCGGCGGCGGCGGGGACGACAAATGGCGGGGGTGATA
TGGGTGGTGGAGATGGTGGAACAGGTGGTACAATCGTGACCCTGTCGATG
TACTCCACCTGCCTGCAATTCATGGCCCGCGCTTGGCGAGGGCGAGAGGC
GTTGCTGATCCTCGACCGCATCCGGGCGGCGGGGCTGGTGCCGGATGTGC
GGTGCCTCAACTGCGCAATAACGGCGTGCGGAAGGAGCGGGCTGTGGGAG
CAGGCGTTGCTCATCCTCCGCGGCAGCGGCGACGACGATGACGAGAAAGA
CGGCGCTGCAGACCGCGATGTCGTTTCTTGGACTTCCGCCGTGGACGCGT
GTGGGAAGGCCGGGAAGTGGAGGGAGGCGTTGGAGTTGGTCGAAGAGATG
CAGACGGATAGAGTGGGGATAGCACCGAACGTGATCACCTACAATGCCGC
CATCTTCGCCTGCCGAAGGGGCAAGCAGTGGGAAAAAGCCGTCGCGATGC
TGCAAGATATGCCGAAGCGGGGAGTTACCCCGAACGTCGCCAGCTTTTCG
GCGGTCATCTCGGCGTTGGGAGATGCTGGTCGCTGGAGGGAGGCTGTGGA
GCTGTTCAGAGAGATGCCGAGTGTCGGCGTCGCACCCGACCTTAAAAGCT
TCACGGCCACCATCTCCGCTTGTGCAGGCGTTAACACGCGCCGGTCACAG
AGAGGGGGCCGCCCCGGCAAAGGCACCGGCGGCGGCGTAACCGGCAGGGC
AGCGAAGAATGTCAGCGGCGGTGGGAGCGCGGCCGCCGCCACCGCTGCTA
CTGCTGCTGCCGGTTCGGAAGCAATATCAAGTGCTTCCGCGACAGCAGGA
ACATCAACGATGAGTATGGCGAGGAAGGATGCCTGGGAAGAGGCCCTGGC
GCTCCTTAGAGAAATGCCCTCGGCCGGGGTTACCCCTAATTTGTATCATT
TCAACGCGGCCGTGTCCGCCTGCGCGGCACGCGGCCGATGGAGTGAGGCC
CTTTCGCTCCTGGACGAAATTGAGCGGTCGGCAAACTTGTCGCCTGATAC
TTTCACCTTCTCCGCAGCTATAATGGCGTGCGGTAACGGACTGAAGTTCG
GACAGGCTGTAGCGCTTCTGCGGGACATGCCTGAGAAGAACGTCAGGCCC
AACGCTTTCCACTACAACGCGGCCATCTCGGCCTGCGCGAAGTGCGGGCG
AGACCAGGACGCCTCAGATCTGCTGTCGGAGATGTGGGAGGTTGGCGTTA
CCCCTGATGCCTTCAGCTACTCCTCCGCGATAACGGCGTGCAGGAACGGC
AATAACTTGCGGAGGGCGTCGGAGCTTAAGCAGGAGATGCAGGAAAGGGG
CATCAAGGACAATGGTTGGGTTGATTCTATTTTGTCGCGGGTCCCCTAA
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