mRNA_P-littoralis_Contig193.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.16.1
Unique NamemRNA_P-littoralis_Contig193.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:13237..17125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size789
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.642457-UTR-P-littoralis_Contig193:13236..135561680789927.642457-UTR-P-littoralis_Contig193:13236..13556Pylaiella littoralis U1_48UTRP-littoralis_Contig193 13237..13556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.6526158-CDS-P-littoralis_Contig193:13556..139821680789927.6526158-CDS-P-littoralis_Contig193:13556..13982Pylaiella littoralis U1_48CDSP-littoralis_Contig193 13557..13982 -
1680789927.66398-CDS-P-littoralis_Contig193:17083..171251680789927.66398-CDS-P-littoralis_Contig193:17083..17125Pylaiella littoralis U1_48CDSP-littoralis_Contig193 17084..17125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.16.1prot_P-littoralis_Contig193.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 13557..17125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.16.1

>prot_P-littoralis_Contig193.16.1 ID=prot_P-littoralis_Contig193.16.1|Name=mRNA_P-littoralis_Contig193.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
HSDDLHRRCQRRTKPRTCYQHRSLSLHNAITGAAKGGPGWTQPQNPDGAQ
QEGSRDQRWAHSPKLRPVGEACPEIGRSPGRGKSKPHPPGESCWTYHVIQ
KGLRTYKRIRIILPCFRRRFVLPLCKLLIRMVCTKPIGSAVYIKATLIGI
ENISG*
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mRNA from alignment at P-littoralis_Contig193:13237..17125-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.16.1 ID=mRNA_P-littoralis_Contig193.16.1|Name=mRNA_P-littoralis_Contig193.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3889bp|location=Sequence derived from alignment at P-littoralis_Contig193:13237..17125- (Pylaiella littoralis U1_48)
CACTCTGACGACTTGCACCGAAGATGCCAAAGACGCACCAAAGTGAGTGT
GTGCTGCTGAACGATGAAGTATGTCCAAGCATGTATGGAGCCTATGGAGA
TAGACCACATATTATGTAGTTCTGTACCAAGCATGCATGCATAATTCAGA
ACAAGCATCTCAGCATCGAATATCGCAGCGCAGCAGTCCCCATTCCTAGA
AGTCTGGGCCACGCAGTGCTCCAAGTGTGCCGATGATTCTATAGCTTTGT
CGAACTTATGGAACACGGGCACCGTTGTTGCTTCAATCCCACAGGAGCGG
GGAAAAGGCAGTGCTCTTTACTCTCCTGCCGTCGTCCACAATGAAGTTTG
CTTTTCGCGCACTTTCCCCAGGCTTTTTCTCTCCTGGCGCATTATTTTCC
ATTTTCCTTTCCATTCTCCTTTTTCCCAACGGGTTTTACTCCAATCCCAA
TCAAATCATCATGTGTATCACACTGCTGTACAGAGAACACTCCTGTTGCA
TGCACTTCTGTCCTGGTAGCACTTACCGAACTGCGGGTATTACGTTACCG
GGTACCCGGAAACTAGGTTTCCCCAAGCACACAGCAGCCTCAATCCTACA
AGCATACTCCGAGTATACGATATGAAATTTGAGACTGTCGTACTTGACGC
CTCAAGGTCCCAGGTTCGATTCCCTCATGAAGCACTTATTTTATTTTCGA
AAACAAAACGAAAATAATACAGAAATAATACAGGTAATTTTTTCTTCATA
AATAGACTACTGCTGCTGCTGTGTTTTTCCGAGCCTCATATTCGAAGTAC
CATAAAATGTTTTTTTATCCTTTATCTTTGCTTTTCCACCGGTTGGCTGT
GAAGAAAAAGAGGAGTATTATTTTTTAGGTAACGGGAAATAAACAACCAG
CAGCGGCTAGTTGCTCTTCCGTAGGAACACTTTCCTACTTTTTTTCACGC
GGGAAGACGGAATTTTGTTTTTCGGGAACCGGGACGGGGCGCATATTAGT
TAGACGTGGCGGGACGGGGAGATTAAGTTAAATTTGTTCTTAGGGCCGGG
ATGGGACTGAAGTTTTTTTGCGGTACTGAAGCATTTTTTTCGGCGAGGCG
GGACGGAAACCCGCCCCGTCCTTGCAAGGGCGATTTCCTTCCCGCCAGTC
GTCTATGTAACGCTTATATATTTTTGGCAACGAGGATGCATATATTTTTT
TTTTTCTTACAAACACATCAATGTGTTCGCCTCGAGGATGCTTACATGTA
AAACTCGATTTCATATCCATGGAAACATGATCTCCGGAAATTTCTTAGAA
GGCATGAGGGGTGACGTACGTGCGGTCAACCTGACACATCCAAGTGTTGA
GAAGGACAGATACAGCAATTACCACCACCGTCATCCTCTCGTTCCTTGCA
CCGACTCTCGTTGTGAAACCTTCTTGGCAGTCACTTCCATTCATGGGACG
TTGAGTTGAAGGTGGGGTCATTCAAGCGACAAAGAGAAGGGGCGCTGGTT
GTTGTTGGGGAATTCTGGAAATACCAACCGACAGATCCATCTGACCACAC
TTGAGTACTGCAAAGTACTTGGAAAATATACCGCTTGTTCTACGGCCTGA
AAAGTAATTACAGCAGCAGCAGAACACATCCGATAGAGCGCGATGCTGAC
GCAGTCTGTCGATTGAAGGACCCCACCTCAAACGCAACACCTTGATGACG
GACACCAGCACAATGAGGCAACAGCCACGAAGGTCGCGTTGACTTGTGTA
GGTACCAATATCTGACTGCTGCTGTGGTGTTGTCAAATGTCTTGGCTGGA
TATTGTCCTCCCGCATCTCATCATAATTCGCACACCTTCAAAAAATGAAG
GGCGACTCTCAATCAAATCGTTTCTTTTCGAACGCCTGGCCAACTCACAT
ACCAGCGGCCGGACTGGTAACGCGGTGGCTCTACGGCCACTTCGATGCCC
CCACGAGGTCACGATTACGTGCAGGTCTCACGGCGTGCTGCCACTGCTGT
GTGTGCACACTTATTTGGACGATATGAAAATATTGAACGTGGAAACATCC
TAGAAATCTGGAAAGGATTTGGGCCACTTTTTTGGCCCGAGTATTGCAAA
TATGGACAAACGCCTCCATATTATTCCATACATATGTAAACTGGAAATTT
CCATTATATGGACAAATATGGAAATTTCCAGATATATAAAATATTAAATA
TGTGTTCCATATATATAAAATATTAAATATGGACGTCATGTGATGCTTAA
AACGACCCTTCCTTACAGCCCCGAACCTTGGTTCTGCCCGACGCACATGA
GAAAAACCTCGGTCATGCCCAACGTACAATAGACAAATGTATATATCGCA
TATCGCGCCCTTCAGTCGGCTGCAGGGTGTACATGTACATGCACACCCAC
ATTAACCCTCCTGATACTAGGCTCCGTGACACAGGTGGCTAGTCGAGAAA
CCTGTTTTTTCTTGTCGTTCTAAAAGGTACCGTTTCGTGCAACCTCGCCG
CGTTATGCCTGTAAATCGCCTCGAGAATTGCAGCAGCACAGCAGCCATGG
CACGAGCTAGAAATACGCAGGGGCCGCGGCAAAGGCCCGCAATAGGCTGA
ATAGGTTGGGGTTAGATAGTAGGAGGATTCCCAGCCGCTAGTACGAGCCG
ACAGAGGTAGCATGTTGTATCCCTGATTCCGGTGTGTTTGCTCCTGCTCT
CTATTTGAAGTATACATCCTATTGCCTGGAAAAATCGCCCGATTTTTCCC
GGCTGAAGGTTTTCCTGTATCTGTAATTCTCTAATCCCCTGTGGTGGAGG
AGGCCTTCGGCCTATTTAGCGTACCCATTGCTGCTGCTGCCTGGTGAAGG
CTCTCGTAAAAAAGCACACAACCTTGCAGACCGGGCTGAAACAAAAAAAG
AAAACATTGCCCGATTCTGTTGCCCAATTTCCTCTGAAGGCCCAGAAGGG
GTAACAGGCCCACACTGTGTACTCATTAAATACTACCAGGGCTGCGATTT
CCTTGATCATTTATCGTTAATTTTGTGCCACACACGACGACTGCTCGGCC
TACTGCCCTGACCCCCCCCTACTCTTGCCCGCCGGCCTCAACACTCACTC
ACGCCTGTTGATGGTTCGGCTGCATGAATCGTTCATCAAACAGCCGAGGA
CGTGTTATCAACACCGATCACTCTCCTTGCACAATGCGATCACCGGGGCT
GCTAAAGGAGGACCTGGCTGGACTCAACCGCAGAATCCAGACGGTGCTCA
ACAAGAAGGGAGCAGGGATCAAAGATGGGCTCACAGCCCAAAATTGCGCC
CGGTTGGTGAGGCATGCCCAGAAATCGGCCGATCCCCTGGCCGGGGAAAA
AGCAAACCCCATCCCCCCGGTGAGTCGTGTTGGACGTATCATGTCATACA
GAAAGGCCTCCGTACATACAAACGAATCCGCATTATTCTTCCCTGCTTTC
GAAGGAGGTTTGTCCTACCGTTGTGCAAGTTGTTGATACGGATGGTGTGC
ACAAAGCCAATAGGATCGGCCGTTTATATTAAAGCAACTTTAATCGGAAT
CGAAAATATTAGTGGGTAGCCAAACTTACTCCCGCACATGCGGCGCATCA
AGCAGATTTTTTATTTCGCCCTTATTATTCCGGAAGCTGAAGGAAAGGGT
GGAATCGAAGAAGTCCGAGTTTGTAGTCTAAAATGCAGCTCAAAAATCGA
TTTGACCTAGAACACGAGCAGAGAGGTTTTTGCTTTGCTTTCTGGGAGTA
CATAGGTGCACATCGATGTGTCTTTGCGTACATAGTCGGTCACAGCCCAA
CTTGTATCCCCCTGTACGTATGTGTGACCTCGGCGAAAGCTGGTGTTCCG
TAGATTACTAGAAAGGGGAAAGGAATTGAGAAGCAGTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:13237..17125-

>mRNA_P-littoralis_Contig193.16.1 ID=mRNA_P-littoralis_Contig193.16.1|Name=mRNA_P-littoralis_Contig193.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig193:13237..17125- (Pylaiella littoralis U1_48)
CACTCTGACGACTTGCACCGAAGATGCCAAAGACGCACCAAACCGAGGAC
GTGTTATCAACACCGATCACTCTCCTTGCACAATGCGATCACCGGGGCTG
CTAAAGGAGGACCTGGCTGGACTCAACCGCAGAATCCAGACGGTGCTCAA
CAAGAAGGGAGCAGGGATCAAAGATGGGCTCACAGCCCAAAATTGCGCCC
GGTTGGTGAGGCATGCCCAGAAATCGGCCGATCCCCTGGCCGGGGAAAAA
GCAAACCCCATCCCCCCGGTGAGTCGTGTTGGACGTATCATGTCATACAG
AAAGGCCTCCGTACATACAAACGAATCCGCATTATTCTTCCCTGCTTTCG
AAGGAGGTTTGTCCTACCGTTGTGCAAGTTGTTGATACGGATGGTGTGCA
CAAAGCCAATAGGATCGGCCGTTTATATTAAAGCAACTTTAATCGGAATC
GAAAATATTAGTGGGTAG
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