mRNA_P-littoralis_Contig193.11.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.11.2
Unique NamemRNA_P-littoralis_Contig193.11.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:9073..9305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size196
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.5878124-UTR-P-littoralis_Contig193:9072..91121680789927.5878124-UTR-P-littoralis_Contig193:9072..9112Pylaiella littoralis U1_48UTRP-littoralis_Contig193 9073..9112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.602238-CDS-P-littoralis_Contig193:9112..91491680789927.602238-CDS-P-littoralis_Contig193:9112..9149Pylaiella littoralis U1_48CDSP-littoralis_Contig193 9113..9149 +
1680789927.6110606-CDS-P-littoralis_Contig193:9186..93051680789927.6110606-CDS-P-littoralis_Contig193:9186..9305Pylaiella littoralis U1_48CDSP-littoralis_Contig193 9187..9305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.11.2prot_P-littoralis_Contig193.11.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 9113..9305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.11.2

>prot_P-littoralis_Contig193.11.2 ID=prot_P-littoralis_Contig193.11.2|Name=mRNA_P-littoralis_Contig193.11.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MRPVQFVISPSKRTYNVHMKEHDGETERLKHTVRCHKNSHTAGQLPNGEA
R*
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mRNA from alignment at P-littoralis_Contig193:9073..9305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.11.2 ID=mRNA_P-littoralis_Contig193.11.2|Name=mRNA_P-littoralis_Contig193.11.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=233bp|location=Sequence derived from alignment at P-littoralis_Contig193:9073..9305+ (Pylaiella littoralis U1_48)
TCCAAGATTTTTCAATAGTAATCTGGATAATTCATCGTGAATGCGTCCCG
TACAATTCGTGATTAGCCCATCGAAACGTATACATATTTTGCGTTTGAAG
GTGCCCCGTACAAGGCACCTACAACGTACATATGAAAGAGCACGATGGGG
AGACTGAACGCCTCAAACACACAGTACGCTGCCACAAAAACAGTCATACT
GCTGGACAACTTCCCAATGGAGAGGCGCGATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:9073..9305+

>mRNA_P-littoralis_Contig193.11.2 ID=mRNA_P-littoralis_Contig193.11.2|Name=mRNA_P-littoralis_Contig193.11.2|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig193:9073..9305+ (Pylaiella littoralis U1_48)
ATGCGTCCCGTACAATTCGTGATTAGCCCATCGAAACGCACCTACAACGT
ACATATGAAAGAGCACGATGGGGAGACTGAACGCCTCAAACACACAGTAC
GCTGCCACAAAAACAGTCATACTGCTGGACAACTTCCCAATGGAGAGGCG
CGATAG
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