mRNA_P-littoralis_Contig192.104.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig192.104.1
Unique NamemRNA_P-littoralis_Contig192.104.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig192.104.1 vs. uniprot
Match: A0A6H5KQP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP3_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.620e-56
Identity = 96/104 (92.31%), Postives = 99/104 (95.19%), Query Frame = 2 
Query:   17 MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQESVNVKRPAPVFHVGGGEYDVPEATKNAVASFVVPAGFQQEGAREDSFLFSL 328
            MSDA GGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQ+SVNVKRP PVF   GGEYDVPEATKNAVASFVVPAGFQQEGAREDSF++SL
Sbjct:    1 MSDASGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQQSVNVKRPPPVFRASGGEYDVPEATKNAVASFVVPAGFQQEGAREDSFMYSL 104
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BLAST of mRNA_P-littoralis_Contig192.104.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 5.040e-56
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 2 
Query:   17 MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQESVNVKRPAPVFHVGGGEYDVPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVP 346
            MSDA GGSAAS PDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQ+SVNVKRPAPVF V GGEYDVPEATKNAVA+FVVP GFQQEGAREDSF++SLGNY VP
Sbjct:    1 MSDASGGSAASTPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQQSVNVKRPAPVFRVSGGEYDVPEATKNAVAAFVVPTGFQQEGAREDSFMYSLGNYCVP 110
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BLAST of mRNA_P-littoralis_Contig192.104.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.300e-24
Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = 2 
Query:   17 MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQESVNVKRPAPVFHVGGGEYDVPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVPVGVVSRTSAENKAWFRCQVGGCIKDGKTIPCPKGHKSNVNKHLKDSHQLRGGQG 508
            MS+  GGSAAS+  A      S++       DA  ++ V V     S G    +V +K+PAP++   G ++ VP+ T +++ SF     +Q+EGAREDSFL+SLGNY  PV      S +   +++CQVG C    KT PCPKG KSNVNKH ++ HQL G +G
Sbjct:    1 MSETAGGSAASSAAA------SSVXXXXXGTDAPSEDVVEV-----SAGVDSAAVRLKQPAPIYTKSGDDFVVPQVTIDSIESFKAKDEYQREGAREDSFLYSLGNYAAPV----EKSGKWIGYYKCQVGKCRTSTKTTPCPKGSKSNVNKHFREVHQLVGAKG 149
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BLAST of mRNA_P-littoralis_Contig192.104.1 vs. uniprot
Match: A0A6H5L4Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.070e-19
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 2 
Query:   17 MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQESVNV 187
            MSDA GGSAASAPDA GSPGTSTLAP SSTQDAQQDNEVVVVPGSTSGGAPQ+ + V
Sbjct:    1 MSDASGGSAASAPDADGSPGTSTLAPCSSTQDAQQDNEVVVVPGSTSGGAPQQFIIV 57
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BLAST of mRNA_P-littoralis_Contig192.104.1 vs. uniprot
Match: A0A6H5K6K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K2_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 5.530e-6
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = -3 
Query:    3 YRENHPHREQMRPNHRPRHSCSAAT 77
            YRENHPHREQM+PNHR RHSCSAAT
Sbjct:   29 YRENHPHREQMQPNHRARHSCSAAT 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KQP3_9PHAE4.620e-5692.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS21_9PHAE5.040e-5690.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJJ9_9PHAE2.300e-2442.07Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L4Z5_9PHAE1.070e-1987.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6K2_9PHAE5.530e-692.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig192contigP-littoralis_Contig192:431704..432226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.4887848-CDS-P-littoralis_Contig192:431703..4322101680789927.4887848-CDS-P-littoralis_Contig192:431703..432210Pylaiella littoralis U1_48CDSP-littoralis_Contig192 431704..432210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.5019472-UTR-P-littoralis_Contig192:432210..4322261680789927.5019472-UTR-P-littoralis_Contig192:432210..432226Pylaiella littoralis U1_48UTRP-littoralis_Contig192 432211..432226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig192.104.1prot_P-littoralis_Contig192.104.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig192 431704..432210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig192.104.1

>prot_P-littoralis_Contig192.104.1 ID=prot_P-littoralis_Contig192.104.1|Name=mRNA_P-littoralis_Contig192.104.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGA
PQESVNVKRPAPVFHVGGGEYDVPEATKNAVASFVVPAGFQQEGAREDSF
LFSLGNYYVPVGVVSRTSAENKAWFRCQVGGCIKDGKTIPCPKGHKSNVN
KHLKDSHQLRGGQGKSREQ
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mRNA from alignment at P-littoralis_Contig192:431704..432226-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig192.104.1 ID=mRNA_P-littoralis_Contig192.104.1|Name=mRNA_P-littoralis_Contig192.104.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=523bp|location=Sequence derived from alignment at P-littoralis_Contig192:431704..432226- (Pylaiella littoralis U1_48)
ATAGTAGCAGCTGAGCATGAGTGACGCGGGCGGTGGTTCGGCCGCATCTG
CTCCCGATGCGGGTGGTTCTCCCGGTACGAGTACCCTCGCACCGGGTTCT
TCAACACAAGACGCGCAACAAGACAACGAGGTGGTCGTCGTGCCGGGCTC
AACGAGTGGAGGAGCGCCACAGGAGTCAGTGAACGTCAAGCGTCCCGCAC
CGGTCTTCCACGTTGGCGGAGGGGAGTACGACGTGCCGGAGGCTACGAAG
AACGCTGTCGCGTCATTCGTTGTGCCGGCCGGTTTCCAGCAGGAAGGCGC
CCGCGAGGACTCCTTCCTGTTCAGCCTTGGAAACTACTACGTGCCCGTCG
GTGTTGTGAGTAGGACATCAGCGGAAAACAAAGCTTGGTTCAGGTGCCAG
GTTGGCGGCTGCATCAAAGACGGCAAGACGATCCCTTGCCCGAAGGGGCA
TAAGAGCAACGTCAACAAGCACCTAAAGGATTCGCACCAACTGCGTGGCG
GCCAAGGAAAATCGAGGGAGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig192:431704..432226-

>mRNA_P-littoralis_Contig192.104.1 ID=mRNA_P-littoralis_Contig192.104.1|Name=mRNA_P-littoralis_Contig192.104.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig192:431704..432226- (Pylaiella littoralis U1_48)
ATGAGTGACGCGGGCGGTGGTTCGGCCGCATCTGCTCCCGATGCGGGTGG
TTCTCCCGGTACGAGTACCCTCGCACCGGGTTCTTCAACACAAGACGCGC
AACAAGACAACGAGGTGGTCGTCGTGCCGGGCTCAACGAGTGGAGGAGCG
CCACAGGAGTCAGTGAACGTCAAGCGTCCCGCACCGGTCTTCCACGTTGG
CGGAGGGGAGTACGACGTGCCGGAGGCTACGAAGAACGCTGTCGCGTCAT
TCGTTGTGCCGGCCGGTTTCCAGCAGGAAGGCGCCCGCGAGGACTCCTTC
CTGTTCAGCCTTGGAAACTACTACGTGCCCGTCGGTGTTGTGAGTAGGAC
ATCAGCGGAAAACAAAGCTTGGTTCAGGTGCCAGGTTGGCGGCTGCATCA
AAGACGGCAAGACGATCCCTTGCCCGAAGGGGCATAAGAGCAACGTCAAC
AAGCACCTAAAGGATTCGCACCAACTGCGTGGCGGCCAAGGAAAATCGAG
GGAGCAG
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