mRNA_P-littoralis_Contig192.99.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig192.99.1
Unique NamemRNA_P-littoralis_Contig192.99.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 8.510e-31
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    4 FSVFGRNEVAPSQNEG-DVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYWSKVEKQMFPSLKYVAQQTFGVQASAAQVER 246
            FS+FG NEVAPSQ++G DVD VEEEVS +I+RYKGVFMK  DLPP++VL YW+KV KQMFPSLKYVAQQTFG QASAAQ+ER
Sbjct:  445 FSMFGCNEVAPSQSDGGDVDFVEEEVSGEIIRYKGVFMKPIDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIER 526          
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JWR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR2_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.090e-28
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 1
Query:    4 FSVFGRNEVAP-SQNEGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYWSKVEKQMFPSLKYVAQQTFGVQASAAQVER 246
            F+VFGRNEVAP S NE D+DLVE+ VSS+IMRYKGVFM+STDLPP++VL+YW  V K  FPSLKYVAQQT G QASA QVER
Sbjct:  376 FAVFGRNEVAPQSSNEEDLDLVEKGVSSEIMRYKGVFMRSTDLPPSKVLHYWKTVGKHSFPSLKYVAQQTLGSQASAPQVER 457          
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.210e-20
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    4 FSVFGRNEVAPSQN-EGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYWSKVEKQMFPSLKYVAQQTFGVQASAAQVER 246
            FS+FGRNEVAPSQ+ EGDVD VEEEVS +IMR              +VL YW+KV +QM PSLKYVAQQTFG QASAAQ+ER
Sbjct:  565 FSMFGRNEVAPSQSDEGDVDFVEEEVSGEIMR--------------DVLTYWNKVGEQMLPSLKYVAQQTFGSQASAAQIER 632          
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.650e-18
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 FSVFGRNEVAPSQNEGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYWSKVEKQMFPSLKYVAQQTFGVQASAAQVER 246
            F+ FGR+ V   +     D VE+EV+++IMRYKGVFM S DL PTEVL+YW+   +  FP+LK+VAQQTFG Q SAA VER
Sbjct:  687 FAAFGRS-VGGVEESKQGDAVEQEVANEIMRYKGVFMTSNDLHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVER 766          
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JWE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.440e-16
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    4 FSVFGRNEVAPSQNEGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYW 156
            F+VFGR EVAP  +EG++DLVEEEVSS+IMRYKGVF++STDL P+E LNYW
Sbjct:  315 FAVFGRKEVAPQSSEGNLDLVEEEVSSEIMRYKGVFIESTDLSPSEALNYW 365          
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.390e-10
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 2
Query:  242 RDFSHCGLFSAGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNI 373
            RDFS  GL  A NR+R++EYW+EMV+FLK NFQ IP Y DIPN+
Sbjct:  421 RDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNM 464          
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5KBZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.960e-9
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    4 FSVFGRNEVAPSQNE--GDVDLVEEEVSSKIMRYKGVFMKSTDLPPT 138
            F+ FGRNEVAP  NE   DVDLVEEEV S+IMRYKGVFM+  D+  T
Sbjct:  146 FAAFGRNEVAPQTNEEDADVDLVEEEVVSEIMRYKGVFMRPKDVSTT 192          
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.620e-8
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 2
Query:  242 RDFSHCGLFSAGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNI 373
            RDFS C      NRSR++ YW+EMVMFL  NF+ IP +KDIP I
Sbjct:   64 RDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMI 107          
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.700e-8
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    4 FSVFGRNEVAPSQNEGDVDLVEEEVSSKIMRYKGVFM 114
            F+ FGRNEV P   EGDVDLVE+EVSS+IMRYKGVFM
Sbjct:  350 FASFGRNEVDPQSREGDVDLVEKEVSSEIMRYKGVFM 386          
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.670e-8
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 2
Query:  242 RDFSHCGLFSAGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNI 373
            RDFS C      NRSR++ YW+EMVMFL  NF+ IP +KDIP I
Sbjct:  137 RDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMI 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JB08_9PHAE8.510e-3178.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWR2_9PHAE1.090e-2875.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE5.210e-2065.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE5.650e-1858.02Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JWE7_9PHAE3.440e-1674.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE3.390e-1065.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBZ2_9PHAE7.960e-968.09Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSA7_9PHAE2.620e-859.09Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGB7_9PHAE4.700e-878.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN28_9PHAE7.670e-859.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig192contigP-littoralis_Contig192:427260..427827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size375
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.4412272-CDS-P-littoralis_Contig192:427259..4275081680789927.4412272-CDS-P-littoralis_Contig192:427259..427508Pylaiella littoralis U1_48CDSP-littoralis_Contig192 427260..427508 -
1680789927.4545634-CDS-P-littoralis_Contig192:427701..4278271680789927.4545634-CDS-P-littoralis_Contig192:427701..427827Pylaiella littoralis U1_48CDSP-littoralis_Contig192 427702..427827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig192.99.1prot_P-littoralis_Contig192.99.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig192 427260..427827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig192.99.1

>prot_P-littoralis_Contig192.99.1 ID=prot_P-littoralis_Contig192.99.1|Name=mRNA_P-littoralis_Contig192.99.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
LFSVFGRNEVAPSQNEGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLN
YWSKVEKQMFPSLKYVAQQTFGVQASAAQVERLQPLRSFQCREPQSCRRV
LAGNGDVSQGKFPVYSRLQGHPQH*
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mRNA from alignment at P-littoralis_Contig192:427260..427827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig192.99.1 ID=mRNA_P-littoralis_Contig192.99.1|Name=mRNA_P-littoralis_Contig192.99.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=568bp|location=Sequence derived from alignment at P-littoralis_Contig192:427260..427827- (Pylaiella littoralis U1_48)
CTCTTTTCGGTTTTCGGGCGCAACGAAGTCGCCCCCTCCCAAAACGAAGG AGATGTGGACCTGGTGGAGGAGGAGGTCTCGTCCAAGATCATGCGGTACA AGGGAGTCTTCATGAAATCAACCGACGTGAGTACAACGACTATTGTAACC GTGGTAAGCTTAAGAAGATTTAATTTTTGGTTTTCGTTTCGCATTTCAAT GTTGATGTTGTGTTGTCTCCTAGTTCATGTGGTTGTCGTAGGCCACGAAA TTGAACTCAACACTACACTTCCCCCCTCCCCGATTCCGCGGCTTTTCCCC GTGTCATTCACCCGTGCAGTTGCCGCCCACCGAAGTCCTCAACTACTGGA GCAAAGTAGAGAAACAAATGTTTCCCTCGCTCAAGTATGTGGCGCAGCAA ACATTCGGCGTTCAGGCTTCTGCCGCTCAGGTCGAGAGACTTCAGCCACT GCGGTCTTTTCAGTGCAGGGAACCGCAGTCGTGTAGAAGAGTATTGGCTG GAAATGGTGATGTTTCTCAAGGGAAATTTCCAGTTTATTCCCGACTACAA GGACATCCCCAACATTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig192:427260..427827-

>mRNA_P-littoralis_Contig192.99.1 ID=mRNA_P-littoralis_Contig192.99.1|Name=mRNA_P-littoralis_Contig192.99.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig192:427260..427827- (Pylaiella littoralis U1_48)
CTCTTTTCGGTTTTCGGGCGCAACGAAGTCGCCCCCTCCCAAAACGAAGG
AGATGTGGACCTGGTGGAGGAGGAGGTCTCGTCCAAGATCATGCGGTACA
AGGGAGTCTTCATGAAATCAACCGACTTGCCGCCCACCGAAGTCCTCAAC
TACTGGAGCAAAGTAGAGAAACAAATGTTTCCCTCGCTCAAGTATGTGGC
GCAGCAAACATTCGGCGTTCAGGCTTCTGCCGCTCAGGTCGAGAGACTTC
AGCCACTGCGGTCTTTTCAGTGCAGGGAACCGCAGTCGTGTAGAAGAGTA
TTGGCTGGAAATGGTGATGTTTCTCAAGGGAAATTTCCAGTTTATTCCCG
ACTACAAGGACATCCCCAACATTGA
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