mRNA_P-littoralis_Contig192.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig192.96.1
Unique NamemRNA_P-littoralis_Contig192.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig192.96.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.970e-9
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 ILYYVAGWLLSRVWSHSRRHNIPDQEWEIIPPPVRAP 111
            +LYY+AGWLLS+ WS  RRHNIPDQEW+ I     +P
Sbjct:  142 VLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSP 178
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BLAST of mRNA_P-littoralis_Contig192.96.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.040e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:   84 NHSPSSAGAIERDPILKDMVGEVDARN 164
            NHSPSSAGAIERDPILKDMVGEVDARN
Sbjct:  190 NHSPSSAGAIERDPILKDMVGEVDARN 216
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BLAST of mRNA_P-littoralis_Contig192.96.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 8.260e-5
Identity = 16/27 (59.26%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:    1 ILYYVAGWLLSRVWSHSRRHNIPDQEW 81
            +LYY++GWLLS+VW+H RR  I ++EW
Sbjct:  203 VLYYISGWLLSKVWTHVRRQKIEEREW 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE1.970e-962.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K2_9PHAE9.040e-9100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM7_ECTSI8.260e-559.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig192contigP-littoralis_Contig192:420026..420206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.386672-UTR-P-littoralis_Contig192:420025..4200581680789927.386672-UTR-P-littoralis_Contig192:420025..420058Pylaiella littoralis U1_48UTRP-littoralis_Contig192 420026..420058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.3959124-CDS-P-littoralis_Contig192:420058..4201071680789927.3959124-CDS-P-littoralis_Contig192:420058..420107Pylaiella littoralis U1_48CDSP-littoralis_Contig192 420059..420107 -
1680789927.4066916-CDS-P-littoralis_Contig192:420123..4202061680789927.4066916-CDS-P-littoralis_Contig192:420123..420206Pylaiella littoralis U1_48CDSP-littoralis_Contig192 420124..420206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig192.96.1prot_P-littoralis_Contig192.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig192 420059..420206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig192.96.1

>prot_P-littoralis_Contig192.96.1 ID=prot_P-littoralis_Contig192.96.1|Name=mRNA_P-littoralis_Contig192.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=44bp
ILYYVAGWLLSRVWSHSRRHNIPDQEWEIIPPPVRAPLREIQS*
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mRNA from alignment at P-littoralis_Contig192:420026..420206-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig192.96.1 ID=mRNA_P-littoralis_Contig192.96.1|Name=mRNA_P-littoralis_Contig192.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=181bp|location=Sequence derived from alignment at P-littoralis_Contig192:420026..420206- (Pylaiella littoralis U1_48)
ATCCTGTATTACGTTGCGGGGTGGTTGCTTAGCAGGGTGTGGTCGCATAG
CAGAAGACACAACATACCCGACCAGGAGTGGGACTTCATTGTGCAGCACA
ATCATTCCCCCTCCAGTGCGGGCGCCATTGAGAGAGATCCAATCCTAAAA
GATATGGTTGGGGAGGTCGACGCGAGGAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig192:420026..420206-

>mRNA_P-littoralis_Contig192.96.1 ID=mRNA_P-littoralis_Contig192.96.1|Name=mRNA_P-littoralis_Contig192.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig192:420026..420206- (Pylaiella littoralis U1_48)
ATCCTGTATTACGTTGCGGGGTGGTTGCTTAGCAGGGTGTGGTCGCATAG
CAGAAGACACAACATACCCGACCAGGAGTGGGAAATCATTCCCCCTCCAG
TGCGGGCGCCATTGAGAGAGATCCAATCCTAA
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