mRNA_P-littoralis_Contig192.95.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig192.95.1
Unique NamemRNA_P-littoralis_Contig192.95.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig192.95.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 2.090e-47
Identity = 90/111 (81.08%), Postives = 98/111 (88.29%), Query Frame = 3 
Query:  186 LTPPPFEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRATSAKGAATAKGAAPVGEGTDGTDQLAGGVVAGSGTVTSEGLDVEMARKMTKSQL 518
            + PPPFE  PEI+D+IYKFVLQKFHNVRMGDF+RRLS+NSTLRLSKGELALRQ LRATSAKG ATAKG APVG G DGT +LAGGV+AGSGTVT+EGL VE  RKMTK QL
Sbjct:  270 VAPPPFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLRATSAKGEATAKGVAPVGGGIDGTSRLAGGVMAGSGTVTNEGLAVETVRKMTKPQL 380
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BLAST of mRNA_P-littoralis_Contig192.95.1 vs. uniprot
Match: A0A6H5JA88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA88_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.840e-21
Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:    2 LLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPTEILRIVIESSEVRKAWTKCCPAAVDPPPVRRASRDYRQHLQI 241
            LLF +L +Y FV   ENG YH L  PY+LG YLGDLP   LR+V ES EV+ AW KCCPAAV+PPP R   +  R+   I
Sbjct:  180 LLFVSLDFYNFVLMLENGYYHVLHQPYYLGPYLGDLPAGPLRVVSESEEVKDAWAKCCPAAVEPPPFRSRCQGTREAKDI 259
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BLAST of mRNA_P-littoralis_Contig192.95.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:    2 LLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPTEILRIVIESSEVRKAWTKCCP 178
            LLF T  ++EF +  E G +H L  P+ LGAYLGDLP E LR+V E++ VR AW +CCP
Sbjct:  270 LLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCP 328
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BLAST of mRNA_P-littoralis_Contig192.95.1 vs. uniprot
Match: A0A6H5K3B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B5_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.810e-10
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 2 
Query:   35 VFHAENGIYHFLRNPYFLGAYLGDLPTEILRIVIESSEVRKAWTKCCPA---AVDP 193
            V+  E GI+HFL NP FL A LG+LP EI ++V ES  V++ W  CCP    A+DP
Sbjct:   44 VYVVERGIFHFLENPIFLAACLGELPAEIFKVVSESEVVKEMWGNCCPPGPPAIDP 99
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BLAST of mRNA_P-littoralis_Contig192.95.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.370e-7
Identity = 32/66 (48.48%), Postives = 36/66 (54.55%), Query Frame = 2 
Query:    2 LLFPTLAWYEFVFHAENGIYHFLRNPYFLGAYLGDLPTEILRIVIESSEVRKAWTKCCPAAVDPPP 199
            LLFPTLAWY                         DLP EILR++ ESSEVR+AW KCCP+AV  PP
Sbjct:  224 LLFPTLAWY----------------------LSRDLPAEILRVITESSEVRRAWGKCCPSAVAHPP 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE2.090e-4781.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA88_9PHAE2.840e-2156.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM7_ECTSI1.200e-1254.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3B5_9PHAE5.810e-1051.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K2_9PHAE1.370e-748.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig192contigP-littoralis_Contig192:419489..420006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size519
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.3408651-CDS-P-littoralis_Contig192:419488..4197371680789927.3408651-CDS-P-littoralis_Contig192:419488..419737Pylaiella littoralis U1_48CDSP-littoralis_Contig192 419489..419737 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.3577754-UTR-P-littoralis_Contig192:419737..4200061680789927.3577754-UTR-P-littoralis_Contig192:419737..420006Pylaiella littoralis U1_48UTRP-littoralis_Contig192 419738..420006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig192.95.1prot_P-littoralis_Contig192.95.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig192 419489..419737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig192.95.1

>prot_P-littoralis_Contig192.95.1 ID=prot_P-littoralis_Contig192.95.1|Name=mRNA_P-littoralis_Contig192.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
MGDFSRRLSENSTLRLSKGELALRQQLRATSAKGAATAKGAAPVGEGTDG
TDQLAGGVVAGSGTVTSEGLDVEMARKMTKSQL
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mRNA from alignment at P-littoralis_Contig192:419489..420006-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig192.95.1 ID=mRNA_P-littoralis_Contig192.95.1|Name=mRNA_P-littoralis_Contig192.95.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=518bp|location=Sequence derived from alignment at P-littoralis_Contig192:419489..420006- (Pylaiella littoralis U1_48)
TCTCCTCTTTCCTACTCTGGCGTGGTATGAATTCGTATTCCACGCCGAGA
ACGGAATATACCATTTTCTGCGTAACCCATACTTTCTAGGTGCTTATCTA
GGGGACTTACCGACTGAGATCTTGAGGATAGTGATAGAGTCGTCAGAGGT
ACGGAAGGCATGGACTAAATGCTGCCCTGCCGCCGTTGACCCCCCCCCCG
TTCGAAGAGCATCCAGAGATTATCGACAACATTTACAAATTTGTCTTGCA
GAAGTTTCACAACGTCCGTATGGGGGATTTCTCGCGCCGATTGAGTGAGA
ACTCCACGCTCAGGCTGTCGAAGGGCGAGTTAGCCCTGAGACAACAGCTA
AGAGCCACCAGTGCGAAGGGGGCGGCCACAGCGAAGGGGGCGGCTCCAGT
TGGTGAGGGGACTGATGGAACGGACCAGTTGGCGGGTGGTGTCGTGGCAG
GCTCGGGTACTGTGACGAGTGAGGGCCTTGATGTTGAGATGGCGAGAAAG
ATGACCAAGTCACAGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig192:419489..420006-

>mRNA_P-littoralis_Contig192.95.1 ID=mRNA_P-littoralis_Contig192.95.1|Name=mRNA_P-littoralis_Contig192.95.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig192:419489..420006- (Pylaiella littoralis U1_48)
ATGGGGGATTTCTCGCGCCGATTGAGTGAGAACTCCACGCTCAGGCTGTC
GAAGGGCGAGTTAGCCCTGAGACAACAGCTAAGAGCCACCAGTGCGAAGG
GGGCGGCCACAGCGAAGGGGGCGGCTCCAGTTGGTGAGGGGACTGATGGA
ACGGACCAGTTGGCGGGTGGTGTCGTGGCAGGCTCGGGTACTGTGACGAG
TGAGGGCCTTGATGTTGAGATGGCGAGAAAGATGACCAAGTCACAGTTG
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