mRNA_P-littoralis_Contig192.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig192.94.1
Unique NamemRNA_P-littoralis_Contig192.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig192.94.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.640e-41
Identity = 86/125 (68.80%), Postives = 99/125 (79.20%), Query Frame = 1 
Query:    1 DSGSGNGRVDVVGSGSVGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLGDFDEDFLGQPIDLEEVFSSSPKSNLAGAHGSTRKELSFGHSDVAGETADSAVGETKG 375
            D GSGNG V+V G G  G+ISNV V++ S+ GGE LEW DA+PLE+A +SKLLQELA+  GEDDASLGDFDE+FL + ID +EVF SSPKSNLA A G TR ELSF  SDVAGETA S +GETKG
Sbjct:  366 DHGSGNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSKLLQELAVEDGEDDASLGDFDEEFLARSIDFDEVFPSSPKSNLADAQGPTRVELSFDQSDVAGETAASGMGETKG 490
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE3.640e-4168.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig192contigP-littoralis_Contig192:419022..419436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.2993236-UTR-P-littoralis_Contig192:419021..4190581680789927.2993236-UTR-P-littoralis_Contig192:419021..419058Pylaiella littoralis U1_48UTRP-littoralis_Contig192 419022..419058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.3119254-CDS-P-littoralis_Contig192:419058..4194361680789927.3119254-CDS-P-littoralis_Contig192:419058..419436Pylaiella littoralis U1_48CDSP-littoralis_Contig192 419059..419436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig192.94.1prot_P-littoralis_Contig192.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig192 419059..419436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig192.94.1

>prot_P-littoralis_Contig192.94.1 ID=prot_P-littoralis_Contig192.94.1|Name=mRNA_P-littoralis_Contig192.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
DSGSGNGRVDVVGSGSVGEISNVRVSQDSSAGGESLEWTDALPLEDAEVS
KLLQELALGGGEDDASLGDFDEDFLGQPIDLEEVFSSSPKSNLAGAHGST
RKELSFGHSDVAGETADSAVGETKG*
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mRNA from alignment at P-littoralis_Contig192:419022..419436-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig192.94.1 ID=mRNA_P-littoralis_Contig192.94.1|Name=mRNA_P-littoralis_Contig192.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=415bp|location=Sequence derived from alignment at P-littoralis_Contig192:419022..419436- (Pylaiella littoralis U1_48)
GATAGTGGGTCGGGAAACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTGT
TGGCGAAATTTCGAACGTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCG
AAAGTCTTGAATGGACCGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCG
AAGCTGCTGCAAGAATTGGCTCTGGGGGGTGGGGAAGATGACGCGTCTCT
CGGAGACTTCGACGAAGATTTTTTGGGTCAACCTATCGATCTTGAGGAGG
TATTTTCGTCCTCGCCGAAATCGAACCTGGCGGGTGCCCACGGTTCAACG
AGGAAAGAGTTATCCTTTGGCCACTCTGATGTTGCGGGAGAGACAGCGGA
CTCTGCGGTGGGTGAAACCAAGGGATGAGGGTCAGGGTTTTCAGCCTTGC
TGGTTTCGAATATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig192:419022..419436-

>mRNA_P-littoralis_Contig192.94.1 ID=mRNA_P-littoralis_Contig192.94.1|Name=mRNA_P-littoralis_Contig192.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig192:419022..419436- (Pylaiella littoralis U1_48)
GATAGTGGGTCGGGAAACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTGT
TGGCGAAATTTCGAACGTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCG
AAAGTCTTGAATGGACCGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCG
AAGCTGCTGCAAGAATTGGCTCTGGGGGGTGGGGAAGATGACGCGTCTCT
CGGAGACTTCGACGAAGATTTTTTGGGTCAACCTATCGATCTTGAGGAGG
TATTTTCGTCCTCGCCGAAATCGAACCTGGCGGGTGCCCACGGTTCAACG
AGGAAAGAGTTATCCTTTGGCCACTCTGATGTTGCGGGAGAGACAGCGGA
CTCTGCGGTGGGTGAAACCAAGGGATGA
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