prot_P-littoralis_Contig192.54.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig192.54.3
Unique Nameprot_P-littoralis_Contig192.54.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length473
Homology
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BLAST of mRNA_P-littoralis_Contig192.54.3 vs. uniprot
Match: D7FMM1_ECTSI (Topo-VIb_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM1_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 7.490e-164
Identity = 276/437 (63.16%), Postives = 313/437 (71.62%), Query Frame = 0 
Query:    1 MRLLVPGGGSALYFAEPRLKAMFARMHLLPDRAAGVSFVCEGCLDDMTICVPRGGRDASPHLLVDNNDLIRAFAKGLAAMSEVNKG-IGI---------HARTLGGDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVVGSS--SHCQFADEDVAVFERNRCHGKNSSTWVTAAVALERAPPPRDQSSFAHEPPSGEKTVPLLVHRFANGVPMLDTNTSAACALVAGVASKASWRNIGLQISSSRMQRRVGQLRFVLSAAPTPLKVKGGEEWSALSDIKAVHVSVTANSATVPYTSLRKDAIAHREGYVLATASAVRQGLLDLSNRKSGGFRSAAEAAKEMMQEDLIPRAASSVAFMINRSADVNFQKRCLKALGVGNEYLQERRLCELLEFELKENLRQE 425
            MRLLVPG   AL FA PRLKA F RMHLLPDR AGVSF CEGCLD+M++CVPRGGRDASPHLL+DN DL++AFAKGL+AM++ NK  IG             +LGG                                                            XXXXXXS +  S   H  FA EDVAVFE   C GKNSSTWV AAVA+ERAPP RDQ +F  +   GE TVPL VHRFANGVPMLDTNTSAACALVAGVASK SWRN+GL+ISS+R++RR G+LRFVLS APTPLKV GG +WSAL+DIKAVHV+VTANS TVP+TSLRKDAIAH+EGYV A  SAVRQGLL LSNR+SGGFRSAAEAAK+MMQEDLIP AASSVA M++RSA+ NFQK+CL+ALGVG+EY+QERRL +LL FEL+EN+RQE
Sbjct:  176 MRLLVPGDEEALDFAAPRLKAFFTRMHLLPDRPAGVSFACEGCLDNMSVCVPRGGRDASPHLLLDNQDLVQAFAKGLSAMAKANKAPIGTLETPPXXXATTASLGGQSEGSPHSNDTLDRDTDQPQGQHHLQQQRQSQSCGGQREGSSIGSASQGIQRLEEADSSGXXXXXXSSLAPSFPGHLDFAAEDVAVFE---CQGKNSSTWVMAAVAVERAPPTRDQGTFTQQADRGETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVPFTSLRKDAIAHKEGYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSANANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQE 609
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.54.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMM1_ECTSI7.490e-16463.16Topo-VIb_trans domain-containing protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 431..451
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 427..449
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 427..472
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 166..413
e-value: 1.7E-23
score: 85.0
IPR015320DNA topoisomerase VI, subunit B, transducerPFAMPF09239Topo-VIb_transcoord: 223..349
e-value: 1.6E-5
score: 24.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig192contigP-littoralis_Contig192:296635..304256 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig192.54.3mRNA_P-littoralis_Contig192.54.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig192 288287..305102 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig192.54.3 ID=prot_P-littoralis_Contig192.54.3|Name=mRNA_P-littoralis_Contig192.54.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=473bp
MRLLVPGGGSALYFAEPRLKAMFARMHLLPDRAAGVSFVCEGCLDDMTIC
VPRGGRDASPHLLVDNNDLIRAFAKGLAAMSEVNKGIGIHARTLGGDGAG
RGRPSPSANTATGQAVVSVQHHHHQPQEQQHSESTRQHTQSVSGSQDQGA
MEPSPSPPSSSSSVVGSSSHCQFADEDVAVFERNRCHGKNSSTWVTAAVA
LERAPPPRDQSSFAHEPPSGEKTVPLLVHRFANGVPMLDTNTSAACALVA
GVASKASWRNIGLQISSSRMQRRVGQLRFVLSAAPTPLKVKGGEEWSALS
DIKAVHVSVTANSATVPYTSLRKDAIAHREGYVLATASAVRQGLLDLSNR
KSGGFRSAAEAAKEMMQEDLIPRAASSVAFMINRSADVNFQKRCLKALGV
GNEYLQERRLCELLEFELKENLRQEEERRVAAKVRAAARRADEAAKKKEK
KGKQHSHPPTGEGAAQPSKAKG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR015320TopoVI_B_transducer