mRNA_P-littoralis_Contig192.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig192.50.1
Unique NamemRNA_P-littoralis_Contig192.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.130e-40
Identity = 113/235 (48.09%), Postives = 146/235 (62.13%), Query Frame = 2
Query:  821 RQVGIEGCGGPSAGQTALRMAAVYKHMDIMVILMDAGVVDAGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVSYVNSRDSLLGQTPLLASIMSFSPRIGRILIDAGADTTSAVQFTVGIGEGFFNETPLALISSLRRDTFVK---------EELRKIEATRRLLLQVDAVRAVSWLWPGNIPAIA-PAAKVSVWTEATSSSLTVMMPTMRRSIKSRGVLSAALHR 1495
            RQVGI+GCGG S G  AL+ AA +K+++IMVIL +AGVVD G ALV AA  G E P+KFLL++          R R+TM E +YVN+RD   G TPLL  I  + PR+ R+L++AGADTTS V     +G    + TPL L  +  RD  VK         E+L K+EA RRLLL+V+AV AVSWLWP +I  I   AA+ +  T A S+++T+ M   RR  + R V  AAL R
Sbjct:  207 RQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQA---------RARKTMDEAAYVNTRDRG-GVTPLLWGIQHYRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDK-VKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLR 430          
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 7.420e-37
Identity = 104/230 (45.22%), Postives = 138/230 (60.00%), Query Frame = 2
Query:  821 RQVGIEGCGGPSAGQTALRMAAVYKHMDIMVILMDAGVVDAGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVSYVNSRDSLLGQTPLLASIMSFSPRIGRILIDAGADTTSAVQFTVGIGEGFFNETPLALISSLRRDTFVK----EELRKIEATRRLLLQVDAVRAVSWLWPGNIPAIAPA-AKVSVWTEATSSSLT--VMMPTMRRSIKSRGVLSAAL 1489
            RQVGI+GCGG S G+ ALR AA++  +DIM IL DAGVVD G ALV AA  G E P+KFLL++          R R++    +Y+N+ + + G T LL  I    PR+ ++L++AGADTTS V      GE  F+ TPL L   L      K    EE  K+E  RRLLL+ +AV AVSWLWP + P I  A AK +  T ATS++ T  +M+   RR+   +G+L+A L
Sbjct:  207 RQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQA---------RGRKSTDRAAYMNTLNGV-GLTSLLDGIQRCRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGRSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALL 426          
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.890e-34
Identity = 105/248 (42.34%), Postives = 141/248 (56.85%), Query Frame = 2
Query:  821 RQVGIEGCGGPSAGQTALRMAAVYKHMDIMVILMDAGVVDAGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVS-YVNSRDSLLGQTPLLASI-----MSFSPRIGRILIDAGADTTSAVQFTVGIGEGFFNETPLALIS-SLR-----RDTFVKEELRKIEATRRLLLQVDAVRAVSWLWPGNIPAIAPAAKVSVWTEATSSSLTV-----MMPTMRRSIKSRGVLSAALHR*AVAYD 1513
            ++ GI GCGG + G TAL++AA+  HMD+M+ L  AGVVD G ALV A   G    VKFLLQ+           +  T  E S YV+      G+TPL+ +I      S SP++ R+L+DAGADTTS V+FT+  G      TPL+L + +LR     R     E LR++E  RRLLL+V+AV A SWLW   +P +   A  +  TE  SSS T      ++P +RR  + RG +SA+L R AV  D
Sbjct:  204 QRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQ-----------QNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYAVKLD 440          
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 5.330e-34
Identity = 108/238 (45.38%), Postives = 135/238 (56.72%), Query Frame = 2
Query:  821 RQVGIEGCGGPSAGQTALRMAAVYKHMDIMVILMDAGVVDAGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVSYVNSRDSLLGQTPLLA---SIMSFSPRIGRILIDAGADTTSAVQFTVGIGEGFFNETPLALISSLRRDTFV-------KEELRKIEATRRLLLQVDAVRAVSWLWPGNIPAIAPAAKVSVWTEATSSSLTVMMPTMRRSIKSRGVLSAALHR*AV 1504
            +++GIEGC   SAG  AL  AA  +H+DIM IL +AGVVD G AL  AA  G E  VKFLL+ R       HK E     E +Y+N+RD + G TPL+       S +PRI R+L+DAGADTTS VQ     G   FN+TPLA      R   V       KE L+++EA  RLLL+VDAV AVSWLWP   P I  A +     E    +L +M+P ++R  K R  L A L R +V
Sbjct:  299 QELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHR-------HK-EGGCGVEGAYLNARD-VNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDP--EPPLPALKLMLPILKRRTKRRCGLVATLLRYSV 525          
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 8.170e-32
Identity = 96/212 (45.28%), Postives = 124/212 (58.49%), Query Frame = 2
Query:  893 KHMDIMVILMDAGVVDA-GSALVYAAQCGDEGPVKFLL-QRRKMQEQKVHKRERETMGEVSYVNSRDSLLGQTPLLASI---MSFSPRIGRILIDAGADTTSAVQFTVGIGEGFFNETPLALISSLRRDTFV------KEELRKIEATRRLLLQVDAVRAVSWLWPGNIPAIAPAAKVSVWTEATSSSLTVMMPTMRRSIKSRGVLSAALHR 1495
            +HMDIM IL  AGV DA G  L+  A  G E  V+FLL QRRK  E  VH          +Y NS D   G TPL  SI    S +PRI R+L+DAGADTTS V+ T   G   +N+TPLA+ +SL R+  V      +E+L +++A RRLLL+VDAV AVSWLWP + P+I  A + S   E     L++ +P ++R  K+  V  A L R
Sbjct:    3 QHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVH----------AYANSSDGS-GMTPLSCSIEWCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLR 203          
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.320e-31
Identity = 183/430 (42.56%), Postives = 233/430 (54.19%), Query Frame = 2
Query:  269 LHEAAYHGSTEDILSILSRGSVAIDHVGPGGYTPLMFAARKCQSSAVRVLLNKGANLSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPGRCIPSGGXXXXXXXXXXXXXXXXXXXXXXXXXXSLIRDG--DVVXXXXXXXXXXXXXXXXXXRQVGIEGCGGPSAGQTALRMAAVYKHMDIMVILMDAGVVDAGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVSYVNSRDSLLGQTPLLASI-------MSFSPRIGRILIDAGADTTSAVQFTVGIGEGFFNETPLALISSLRRD-----TFV-KEELRKIEATRRLLLQVDAVRAVSWLWP------GNIPAIAPAAKVSVWTEATSSSLTVMMPTMRRSIKSRGVLSAALHR 1495
            LH+AA+ GSTE    +L+ GS  I+      +TPL+FAA    SS + +LL+KGAN+SI           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN     P  G                           + R     ++                  ++VGIEGCGG S G+ AL MA   + +  M +L  AGVVD G AL  +A  G E  VK+LLQ         H +     G  +YVN RD   G TPLL+SI        S  PR+ R+L++AGADTT+ ++ T  +G   F+ TPL L   + +D     T++ K+ L ++E  RRLLLQV+AV A SWLWP      G  P  A  A+V+  T A +  L  ++P +RR  +  GV+  AL R
Sbjct:    4 LHDAAFKGSTERTAELLATGSWDINQGTVNNWTPLIFAASMGHSSVLGILLSKGANVSIVTDTGVTALHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDIRTPVDGETPLFRAMTEGQLEATRELLRANANPLITRAPLPTLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQN--------HAKH---YGPGAYVNVRDRN-GTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNA--AEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCR 419          
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.740e-31
Identity = 100/237 (42.19%), Postives = 128/237 (54.01%), Query Frame = 2
Query:  821 RQVGIEGCGGPSAGQTALRMAAVYKHMDIMVILMDAGVVD-AGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVSYVNSRDSLLGQTPLLASIMS-----FSPRIGRILIDAGADTTSAVQFTVGIGEGFFNETPLALIS--SLRRDT----FVKEELRKIEATRRLLLQVDAVRAVSWLWPGNIPAIAPAAKVSVWTEATSSSLTVMMPTMRRSIKSRGVLSAALHR 1495
            R+ GI  CGGPS G  ALR+AAVY  +DIM +LMDAGVVD  G AL+ A   G E  V FLL            R++E   + SYVN      G T LL S         +PRI R L+DAGADTTSAVQ          N TPL  ++  +LR          E+L ++EATRR+LL+V AV AVSW+WP + P +A  A      + + + LT ++P +RR    R +L   L R
Sbjct:  177 REFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLL------------RQQEERWQTSYVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFR 401          
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 5.370e-31
Identity = 101/242 (41.74%), Postives = 136/242 (56.20%), Query Frame = 2
Query:  821 RQVGIEGCGGPSAGQTALRMAAVYKHMDIMVILMDAG-VVDAGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVSYVNSRDSLLGQTPLLASI-----MSFSPRIGRILIDAGADTTSAVQFT-VGIGEGFFNETPLALISSLRRDTFV------KEELRKIEATRRLLLQVDAVRAVSWLWP-GNIPAIAPAA---KVSVWTEATSSSLTVMMPTMRRSIKSRGVLSAALHR 1495
            RQVGI GCGGPS G  ALR AA  +H++ M +L+DAG VVD G AL+ AA+ G    VKFLL+RR+                 +YVN      G+TP++ ++        SP+I R+L+DAGA+TT AV  T +       +ETPLA  + L R+  V      KE+L++++ TR LL + +AV AVSWLW  G  P IA AA   K    + A ++ L  M P +RR   +RGVL   L R
Sbjct:  203 RQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADAD-------------AYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFR 431          
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.490e-29
Identity = 90/195 (46.15%), Postives = 114/195 (58.46%), Query Frame = 2
Query:  824 QVGIEGCGGPSAGQTALRMAAVYKHMDIMVILMDAGVVDAGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVSYVNSRDSLLGQTPLLASIMSFSPRIGRILIDAGADTTSAVQFTVGIGEGFFNETPLALISSLRRDTF------VKEELRKIEATRRLLLQVDAVRAVSWLWPGNIPAIAPAAK 1390
            ++GI  CGGP+ G  ALR+AA  +HM IM  L DAGVVD G+AL   A  G E PVKFLLQ      QK +     T G  +YVN+R      TPL  +I   SPR+ R+L+DAGAD TS      GI     + +PL+   S  R  F       +E+L  ++A RRLLL+V+A+ A SWLW  NIP IAPAA+
Sbjct:  260 RLGIGLCGGPTRGNDALRLAAWVQHMSIMTALTDAGVVDTGTALFNVAAKGLEAPVKFLLQ------QKWN-----TPGG-AYVNTRSRNAKFTPLFIAIEGASPRVVRMLLDAGADVTSTCSLPGGI-----SRSPLSQCESNIRSKFCQALPATEEQLNGLQAIRRLLLRVEAIYASSWLWCSNIPCIAPAAR 437          
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 8.920e-29
Identity = 202/422 (47.87%), Postives = 248/422 (58.77%), Query Frame = 2
Query:  269 LHEAAYHGSTEDILSILSRGSVAIDHVGPGGYTPLMFAARKCQSSAVRVLLNKGANLSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPGRCIPSGGXXXXXXXXXXXXXXXXXXXXXXXXXXS-LIRDGDVVXXXXXXXXXXXXXXXXXXRQVGIEGCGGPSAGQTALRMAAVYKHMDIMVILMDAGVVDAGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVSYVNSRDSLLGQTPLLASIM---SFSPRIGRILIDAGADTTSAVQFTVGIGEGFFNETPLALIS-SLRRDTF-----VKEELRKIEATRRLLLQVDAVRAVSWLWPGNIPAIAPA---AKVSVWTEATSSSLTVMMPTMRRSIKSRGVLSAALHR 1495
            LH+AAYHGS + + ++LS GSV I+   P G+TPLM A  K  S   + LL KGAN+S+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXX       S ++R+                      +Q+G+ GCGG SAG  +LR+AA  +++DIM IL   GVVD G ALV AA+   E  VKFLLQ              +  G   YVN+     G+TPL+ +I    S SPRI R LID GADT S V  T         +TPL   + SLR++        +E+LR ++A  RLL Q++AV AVSWLW  +   I  A   A   +       +L  M   +R ++  RGV+  A++R
Sbjct:   36 LHKAAYHGSADRVDALLSTGSVDINQGNPKGWTPLMLATEKGHSLVAKSLLEKGANVSVAGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQKQHGHSEVVRE--------------------LIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQH-------------QAGGGTWYVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMKPTTAGPTLKRMSTVLRTTVGKRGVVLRAVYR 424          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJA9_9PHAE1.130e-4048.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV0_9PHAE7.420e-3745.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVK3_ECTSI1.890e-3442.34EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI5.330e-3445.38EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LSC5_ECTSI8.170e-3245.28EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJF9_ECTSI1.320e-3142.56EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVU3_ECTSI1.740e-3142.19EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1H7_ECTSI5.370e-3141.74EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7FXH6_ECTSI1.490e-2946.15Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7G1U9_ECTSI8.920e-2947.87EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig192contigP-littoralis_Contig192:246327..249234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT11
PFAMsAnk_2,Ank_4
Model size2872
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.33e-36
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size1326
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789925.4626455-UTR-P-littoralis_Contig192:246326..2477001680789925.4626455-UTR-P-littoralis_Contig192:246326..247700Pylaiella littoralis U1_48UTRP-littoralis_Contig192 246327..247700 -
1680789925.4953384-UTR-P-littoralis_Contig192:249062..2492341680789925.4953384-UTR-P-littoralis_Contig192:249062..249234Pylaiella littoralis U1_48UTRP-littoralis_Contig192 249063..249234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789925.477519-CDS-P-littoralis_Contig192:247700..2489871680789925.477519-CDS-P-littoralis_Contig192:247700..248987Pylaiella littoralis U1_48CDSP-littoralis_Contig192 247701..248987 -
1680789925.4868016-CDS-P-littoralis_Contig192:249023..2490621680789925.4868016-CDS-P-littoralis_Contig192:249023..249062Pylaiella littoralis U1_48CDSP-littoralis_Contig192 249024..249062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig192.50.1prot_P-littoralis_Contig192.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig192 247701..249062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig192.50.1

>prot_P-littoralis_Contig192.50.1 ID=prot_P-littoralis_Contig192.50.1|Name=mRNA_P-littoralis_Contig192.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=442bp
MFTAGCNLPPVPSEEEEEEEDYPWSTIAAPSVLHEAAYHGSTEDILSILS
RGSVAIDHVGPGGYTPLMFAARKCQSSAVRVLLNKGANLSIVGDDSFTAL
HISAHEGDLATTKMLVEAGADLEEAISTGATPLYLAASYGRWEVVRALIA
AGANPGRCIPSGGSTPLHAAAEKGHVRAVRELLRANVNPSLIRDGDVVPL
DLATRKGYSGVVRELIRQVGIEGCGGPSAGQTALRMAAVYKHMDIMVILM
DAGVVDAGSALVYAAQCGDEGPVKFLLQRRKMQEQKVHKRERETMGEVSY
VNSRDSLLGQTPLLASIMSFSPRIGRILIDAGADTTSAVQFTVGIGEGFF
NETPLALISSLRRDTFVKEELRKIEATRRLLLQVDAVRAVSWLWPGNIPA
IAPAAKVSVWTEATSSSLTVMMPTMRRSIKSRGVLSAALHR*
back to top

mRNA from alignment at P-littoralis_Contig192:246327..249234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig192.50.1 ID=mRNA_P-littoralis_Contig192.50.1|Name=mRNA_P-littoralis_Contig192.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2908bp|location=Sequence derived from alignment at P-littoralis_Contig192:246327..249234- (Pylaiella littoralis U1_48)
CCATGACGTCCGTACTATATGAGCCAGCAAATTCGAGTTGTGTAAAATCC AGTTGGAATTGAACAAACAATCATCTTTGGTCTTTGGCCACCACTTTCTT CCGTACTTCGTTCCCACAGGGACGGTACAGCCCAGACCAGAGCACCTCAC GCTGGCGGAATTTACCGCTGGGATGTTCACAGCAGGATGCAACTTGCCGC CCGTGCCTAGCGTACAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGATTATCCATGGTCGACGATTGCAGCACCCTC TGTGCTGCACGAGGCAGCGTATCATGGTTCCACCGAAGACATTTTATCCA TCCTTTCTCGGGGATCGGTGGCAATCGACCACGTTGGACCCGGGGGCTAC ACCCCGCTCATGTTCGCTGCGAGAAAGTGCCAGTCGTCCGCTGTCAGGGT GCTGCTCAACAAGGGAGCCAACCTGTCAATAGTGGGTGATGACAGTTTCA CGGCGCTTCACATTTCCGCCCACGAAGGGGACCTTGCCACCACCAAGATG CTGGTGGAAGCCGGTGCAGACCTGGAAGAAGCAATTTCGACAGGTGCCAC TCCGCTTTACTTGGCTGCGTCGTATGGGCGCTGGGAGGTGGTGAGAGCGC TGATAGCGGCAGGTGCGAATCCCGGCCGCTGTATTCCCAGCGGCGGATCA ACACCGCTACACGCTGCAGCGGAGAAAGGACATGTACGAGCAGTCAGGGA GCTGCTTCGCGCCAACGTGAACCCGTCGTTGATTCGAGACGGAGATGTCG TCCCGTTGGACCTCGCTACGCGTAAAGGATACTCGGGCGTGGTACGCGAG CTGATCCGGCAGGTTGGCATCGAAGGTTGTGGCGGTCCCAGTGCCGGTCA AACTGCGCTCCGAATGGCAGCCGTGTATAAGCACATGGACATTATGGTCA TTCTGATGGATGCCGGAGTAGTCGACGCTGGCTCGGCCCTGGTATATGCC GCTCAGTGCGGTGACGAAGGACCCGTGAAGTTTCTTTTGCAAAGGCGGAA GATGCAAGAGCAGAAGGTGCACAAGCGGGAGAGGGAAACTATGGGCGAAG TTTCTTACGTGAACTCCCGTGATTCTCTCTTGGGGCAAACGCCGTTGCTT GCCAGTATAATGTCCTTCTCTCCCCGCATCGGGCGGATACTAATAGACGC CGGAGCGGACACAACGTCGGCCGTCCAATTCACAGTCGGAATAGGGGAGG GTTTCTTCAACGAGACGCCGCTAGCTCTCATCAGCTCTCTCCGCCGTGAT ACGTTTGTAAAGGAGGAGCTGCGCAAGATTGAGGCTACCCGTCGCCTGCT TTTGCAAGTGGACGCAGTTCGGGCGGTATCTTGGCTGTGGCCCGGCAATA TCCCCGCCATCGCCCCAGCTGCCAAAGTTTCAGTATGGACCGAGGCGACT TCATCCTCGCTGACGGTGATGATGCCAACAATGAGGCGGAGCATCAAAAG TCGTGGTGTGCTCTCGGCGGCCTTGCACAGGTAGGCGGTTGCGTACGATC CGGCTTTCGCAAATAGGACGCTGTAATGTAACATCTCGTACTTCTGCTGC TGTAGTTGCTGCTACTGTGTCTCTGCTGCTGTGTCTCTAAGTTCGAATAA AGAAGAAATGCAGCGAAATGAATACCTCATCTCCGACGAGGTCAGAATAC AGCACAGGCAGTTATCTCCGACCTTGATTCGGTTCGTCGTCCGTTCGCCC TGAAATCACGAAATGTATACTCCAAGTATTTTTAAGTCTGAGACCCCTAT CTTGTCGCGAAATCACGCTGCTGTTTGAGGTTACTGTACAGCAGCAGAAA CAACAACACACTGCCAGCGCGGTTTCACAACAGCATCACACTCAAGCGCG TGTCCGTTGAAAGAAAGTCGAGGCCTACTCGCCCGCTGGACACACCAGTC GGGTTCACACAAGATGTCCCCAAATGTCAACACATGTGATTTTTGTTCCA TACGAATACATACCGTCTCCCCTCCCGACGTGCTCTATAGAGTGGAGCGG GGACGGTATGTTTTGTTTTTGCCGCTAGGGTGTCGGCTAGATTTTGGGGT AGACCATCAGCGTTTTGTACCACAGCAGCGGGCGAGGCTACAAGCGTTGA TGGGCAATCAACTGCTCACCACGACCAGAGCCGGTCCCTTACAACCCTGT GTGGCTTGGCTGACGTGGCAAGTCACTGGGTAAGGGTAGTTGAGCTGTCT GGCGTGAGATGTTGTCCGAGTAGAAGTCCGTCGGATTCCCCGGTGTTTGC TTTTCCTGTGTCCAACAATTGATATCAACTCACTTGCGTCACCACGTACA CCATCCGTTGCGCACGAATACGCACGACGACGTAGGGGCAGAGCTGATCA ACAGCATTAGACCTATCTTCGCACTTGTGGCCTATAGGGCCTGAGGTAGA GGCTGCGTACCGCAGGTTTGGTACCATCCTGTGGTTAAAGAAGTTTGCAA ACGATTTTTTTTTATTAATAAAAGTCCATGCCCGGAGGGAAGGGTCATGG GCATCTGTCTGCCCCAGTACTCAAGCTTCAAGTTTCTGAGCCCACACGCT ATGGACCTGGTACCCTGGTGAAGGGAGTCATTCGATCGTGTCCGTTTGCG ACTTCCTAGCGAGAGACATCCTGTCTGTTGTACTCGTACGACTTTTCGTC CGTGTTGCGATCTGAATGTTTACGTAAAAAGTCGGCGTGGTTTGCCGCGA TTCTTGAAATACGCTGAATGAGAGTTTACATCATCTCATCATCTCCTACA CCTCACGAGCGTGGGCAGATCAGATGTCGGCGTACGCATATTGTAGTGTA GGCATTCCGCTCTTTGGCGGTTAAGGGCGAGAACAGCATGCCCTTAAGGG ATCGGTCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig192:246327..249234-

>mRNA_P-littoralis_Contig192.50.1 ID=mRNA_P-littoralis_Contig192.50.1|Name=mRNA_P-littoralis_Contig192.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1326bp|location=Sequence derived from alignment at P-littoralis_Contig192:246327..249234- (Pylaiella littoralis U1_48)
ATGTTCACAGCAGGATGCAACTTGCCGCCCGTGCCTAGCGAGGAGGAGGA
GGAGGAGGAGGATTATCCATGGTCGACGATTGCAGCACCCTCTGTGCTGC
ACGAGGCAGCGTATCATGGTTCCACCGAAGACATTTTATCCATCCTTTCT
CGGGGATCGGTGGCAATCGACCACGTTGGACCCGGGGGCTACACCCCGCT
CATGTTCGCTGCGAGAAAGTGCCAGTCGTCCGCTGTCAGGGTGCTGCTCA
ACAAGGGAGCCAACCTGTCAATAGTGGGTGATGACAGTTTCACGGCGCTT
CACATTTCCGCCCACGAAGGGGACCTTGCCACCACCAAGATGCTGGTGGA
AGCCGGTGCAGACCTGGAAGAAGCAATTTCGACAGGTGCCACTCCGCTTT
ACTTGGCTGCGTCGTATGGGCGCTGGGAGGTGGTGAGAGCGCTGATAGCG
GCAGGTGCGAATCCCGGCCGCTGTATTCCCAGCGGCGGATCAACACCGCT
ACACGCTGCAGCGGAGAAAGGACATGTACGAGCAGTCAGGGAGCTGCTTC
GCGCCAACGTGAACCCGTCGTTGATTCGAGACGGAGATGTCGTCCCGTTG
GACCTCGCTACGCGTAAAGGATACTCGGGCGTGGTACGCGAGCTGATCCG
GCAGGTTGGCATCGAAGGTTGTGGCGGTCCCAGTGCCGGTCAAACTGCGC
TCCGAATGGCAGCCGTGTATAAGCACATGGACATTATGGTCATTCTGATG
GATGCCGGAGTAGTCGACGCTGGCTCGGCCCTGGTATATGCCGCTCAGTG
CGGTGACGAAGGACCCGTGAAGTTTCTTTTGCAAAGGCGGAAGATGCAAG
AGCAGAAGGTGCACAAGCGGGAGAGGGAAACTATGGGCGAAGTTTCTTAC
GTGAACTCCCGTGATTCTCTCTTGGGGCAAACGCCGTTGCTTGCCAGTAT
AATGTCCTTCTCTCCCCGCATCGGGCGGATACTAATAGACGCCGGAGCGG
ACACAACGTCGGCCGTCCAATTCACAGTCGGAATAGGGGAGGGTTTCTTC
AACGAGACGCCGCTAGCTCTCATCAGCTCTCTCCGCCGTGATACGTTTGT
AAAGGAGGAGCTGCGCAAGATTGAGGCTACCCGTCGCCTGCTTTTGCAAG
TGGACGCAGTTCGGGCGGTATCTTGGCTGTGGCCCGGCAATATCCCCGCC
ATCGCCCCAGCTGCCAAAGTTTCAGTATGGACCGAGGCGACTTCATCCTC
GCTGACGGTGATGATGCCAACAATGAGGCGGAGCATCAAAAGTCGTGGTG
TGCTCTCGGCGGCCTTGCACAGGTAG
back to top