mRNA_P-littoralis_Contig192.101.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig192.101.1
Unique NamemRNA_P-littoralis_Contig192.101.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig192.101.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.790e-26
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 GGNTSYPELSPKRVKHLLVELYCATKKAVLGDMLEEVRSAPLPILHHMIDIWT 160
            GGNTSYPEL PKRVKHLLVELYC+TKKAVLGDML EVRSAPLPILHHMIDIWT
Sbjct:  139 GGNTSYPELPPKRVKHLLVELYCSTKKAVLGDMLVEVRSAPLPILHHMIDIWT 191
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BLAST of mRNA_P-littoralis_Contig192.101.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.420e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:    5 GNTSYPELSPKRVKHLLVELYCATKKAVLGDMLEEVRSAPLPILHHMIDIWT 160
            GNT YPEL  +RVK LLVE+Y ATKKAV+ +MLEEV++APLPILHHMIDIWT
Sbjct:   11 GNTPYPELPAERVKDLLVEMYIATKKAVMSNMLEEVKNAPLPILHHMIDIWT 62
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BLAST of mRNA_P-littoralis_Contig192.101.1 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.870e-19
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:    5 GNTSYPELSPKRVKHLLVELYCATKKAVLGDMLEEVRSAPLPILHHMIDIWT 160
            G++ +P L P+RVKHLL ELY ATKK V+G+MLEEVR APLP+LHHMIDIWT
Sbjct:   68 GDSDFPPLRPRRVKHLLTELYVATKKVVVGNMLEEVRKAPLPVLHHMIDIWT 119
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BLAST of mRNA_P-littoralis_Contig192.101.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.350e-17
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:    5 GNTSYPELSPKRVKHLLVELYCATKKAVLGDMLEEVRSAPLPILHHMIDIWT 160
            G +SYP L P+RVKHL+ ELY ATKK V+G+M++EV  APLPILHH IDIWT
Sbjct:  214 GTSSYPTLPPRRVKHLITELYVATKKVVVGNMVQEVERAPLPILHHNIDIWT 265
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BLAST of mRNA_P-littoralis_Contig192.101.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.610e-15
Identity = 30/51 (58.82%), Postives = 44/51 (86.27%), Query Frame = 2 
Query:    8 NTSYPELSPKRVKHLLVELYCATKKAVLGDMLEEVRSAPLPILHHMIDIWT 160
            +T YP L  +R++HLLVE++ ATKKAV+G+MLEE++ APLPI+H+ +D+WT
Sbjct:   28 DTPYPALPSRRIEHLLVEMFVATKKAVMGNMLEEIKKAPLPIVHYGVDLWT 78
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BLAST of mRNA_P-littoralis_Contig192.101.1 vs. uniprot
Match: A0A6H5JXM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.490e-14
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:    8 NTSYPELSPKRVKHLLVELYCATKKAVLGDMLEEVRSAPLPILHHMIDIWT 160
            +T YP L   R+K+LLVE++ ATK AV+G+M EE++ APLPI+H+ +D+WT
Sbjct:    8 DTPYPALPSSRIKYLLVEMFVATKTAVMGNMSEEIKKAPLPIVHYGVDLWT 58
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BLAST of mRNA_P-littoralis_Contig192.101.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-9
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   44 KHLLVELYCATKKAVLGDMLEEVRSAPLPILHHMIDIW 157
            KHLLVE+Y ATKKAV+G+ML E+  APLPI+H+ ID+W
Sbjct:  210 KHLLVEMYVATKKAVVGNMLTEIERAPLPIVHYGIDLW 247
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BLAST of mRNA_P-littoralis_Contig192.101.1 vs. uniprot
Match: A0A6H5JWR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR2_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.160e-5
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:   26 LSPKRVKHLLVELYCATKKAVLGDMLEEVRSAPLPILHHMIDIWT 160
            L+ K V   L++    T+  V+ +MLEEV++APLPILHHMIDIWT
Sbjct:   65 LAAKHVVEKLLQFSFYTR--VMDNMLEEVKNAPLPILHHMIDIWT 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KS21_9PHAE2.790e-2694.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L8D8_9PHAE4.420e-1976.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ81_9PHAE4.870e-1973.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJJ9_9PHAE6.350e-1769.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE4.610e-1558.82Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5JXM2_9PHAE5.490e-1454.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE1.820e-968.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWR2_9PHAE1.160e-555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig192contigP-littoralis_Contig192:429460..429837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789922.9003446-CDS-P-littoralis_Contig192:429461..4295411680789922.9003446-CDS-P-littoralis_Contig192:429461..429541Pylaiella littoralis U1_48CDSP-littoralis_Contig192 429462..429541 -
1680789922.9137967-CDS-P-littoralis_Contig192:429755..4298371680789922.9137967-CDS-P-littoralis_Contig192:429755..429837Pylaiella littoralis U1_48CDSP-littoralis_Contig192 429756..429837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig192.101.1prot_P-littoralis_Contig192.101.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig192 429462..429837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig192.101.1

>prot_P-littoralis_Contig192.101.1 ID=prot_P-littoralis_Contig192.101.1|Name=mRNA_P-littoralis_Contig192.101.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
RRKHVVPRAVSEACETPPRRVVLRHEEGGIGRHVGGSEERTAAHPAPHDR
HLDR
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mRNA from alignment at P-littoralis_Contig192:429460..429837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig192.101.1 ID=mRNA_P-littoralis_Contig192.101.1|Name=mRNA_P-littoralis_Contig192.101.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig192:429460..429837- (Pylaiella littoralis U1_48)
CGGAGGAAACACGTCGTACCCAGAGCTGTCTCCGAAGCGTGTGAAACACC
TCCTCGTCGAGTTGTACTGCGCCACGAAGAAGGTGAAGTCGAAAGTTTAC
TTTGCGCAGCCAACTTTAGTGAAAAGCGCCAACCCCTCCACGGTGAAATT
CAATTGTTATTGTAAGCTGTGCGGTTGCAAACGTTCGTTGAAGGTTGGTG
AAAACAACACAACGCTTCATCTACTATGATTGTCTAAAAACAATGTGACC
TTTTCTGCTGTTCGTACGTCCCGACGCCACCCCTGTTTCGCCTCAGGCGG
TATTGGGCGACATGTTGGAGGAAGTGAGGAGCGCACCGCTGCCCATCCTG
CACCACATGATCGACATCTGGACCGACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig192:429460..429837-

>mRNA_P-littoralis_Contig192.101.1 ID=mRNA_P-littoralis_Contig192.101.1|Name=mRNA_P-littoralis_Contig192.101.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig192:429460..429837- (Pylaiella littoralis U1_48)
CGGAGGAAACACGTCGTACCCAGAGCTGTCTCCGAAGCGTGTGAAACACC
TCCTCGTCGAGTTGTACTGCGCCACGAAGAAGGCGGTATTGGGCGACATG
TTGGAGGAAGTGAGGAGCGCACCGCTGCCCATCCTGCACCACATGATCGA
CATCTGGACCGA
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