mRNA_P-littoralis_Contig191.119.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.119.2
Unique NamemRNA_P-littoralis_Contig191.119.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: D7G7Y8_ECTSI (DNA primase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Y8_ECTSI)

HSP 1 Score: 821 bits (2121), Expect = 2.520e-293
Identity = 408/477 (85.53%), Postives = 436/477 (91.40%), Query Frame = 2
Query:  299 MEVDK-ENVGSAGASGAESKAAPVRSKGVSADDNREAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQAKKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVPEDVRETLHGRWKIGETSPEEKWAELNDELDKRFRKQQGNGKRAKAVDKSSTPEQWRFEVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSSDKTDMKGYAKRFEDTFLKGLYKGIRAKKRDRAERVAAVTTAF 1726
            MEVDK +    AGASG ESKA PVRSKGVSADD+REAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPD+ G PQ V+EQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQ+KQPHKIDIGA+FTLPPK  NHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLR+DFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYF VVAGNDNQ+KKVNV+ PIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPS WGKLLATVPEDVR+TL GRWK+G +SP +KW EL +E++K+ RKQQ   K+ K  D+  TPEQWR+EVV EHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPA VREFDPF VPTLG LQRQID+YDK+HGEE K+VSS +KT+MK Y ++FEDTFL GLYKGIR KKRDR ER+AAVTT F
Sbjct:    6 MEVDKGDQEMVAGASGVESKA-PVRSKGVSADDDREAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDSSGKPQPVDEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQRKQPHKIDIGAIFTLPPK--NHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLRQDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFGVVAGNDNQSKKVNVSLPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSHWGKLLATVPEDVRQTLEGRWKMGGSSPADKWEELVEEMEKKGRKQQQLAKKMKPADRPPTPEQWRYEVVFEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAHVREFDPFTVPTLGQLQRQIDKYDKEHGEETKSVSSINKTEMKKYVQQFEDTFLTGLYKGIRVKKRDRTERIAAVTTDF 479          
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: A0A836CNE6_9STRA (DNA primase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNE6_9STRA)

HSP 1 Score: 456 bits (1173), Expect = 2.830e-150
Identity = 243/468 (51.92%), Postives = 303/468 (64.74%), Query Frame = 2
Query:  386 ADDNREAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQAKKVNVAT-PIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVPED-VRETLHGRWKIGETS--PEEKWAELNDEL----DKRFRKQQGNGKRAKAVDKSSTPEQ----------WRFEVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSS---DKTDMKGYAKRFEDTFLKGLYKGIRAKKRDRAERVAAVTTAF 1726
            A D+  +FS +LLR+YY RLFPY+QM+RWL Y N P S         + +    + ++RE SFTI +D+YIRYQCF D+ +   Q+QK QPHK+DIGAVF++PP  R+H  VK GAF+PVERELVFDIDLTDYDDVRTCCSGAK+C RCW YM MA++VMD  LR+DFGFKHILWV+SGRRGVHCWV DD AR L N+ R AVA Y SVVAG + + KKV   T P+H +L+RAY+ LEP+F E+II E+GQGLL+DP  W KLL T+P D V + L   W+  + S  PE++W E    +    DK  ++                 E+          W++E V  H YPRLDVNVS   NHLLKSPF  HPKTGRVCVPI+ A+  EFDPF VPTLG L  +ID             S     ++T +  Y + FE +FL+ L   IR  +RD A+R AAVT  F
Sbjct:    2 AADDGPSFSEELLRVYYQRLFPYDQMWRWLCYGNDPLS--------SSGQVDKTYINRREMSFTIANDIYIRYQCFKDKADMVAQIQKMQPHKMDIGAVFSVPP--RDHATVKAGAFKPVERELVFDIDLTDYDDVRTCCSGAKVCGRCWGYMAMAMKVMDASLRDDFGFKHILWVFSGRRGVHCWVCDDNARRLPNDARSAVAAYLSVVAGGEGKGKKVASLTWPLHHALQRAYDALEPMFRENIIGEDGQGLLADPENWRKLLRTIPYDGVADDLDASWQAAQFSQTPEQRWQEAVSAVMARADKEAQRXXXXXXXXXXXXXXXXXEEGKGTATSGYLWKYEAVFTHAYPRLDVNVSTHMNHLLKSPFVAHPKTGRVCVPINCARAEEFDPFSVPTLGQLVAEIDANAASQSSPGSGDSGGADIERTSLHKYVQCFEASFLRPLSAAIRKAQRDAADREAAVTVDF 459          
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: F0Y4H5_AURAN (DNA primase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4H5_AURAN)

HSP 1 Score: 442 bits (1136), Expect = 4.150e-145
Identity = 234/443 (52.82%), Postives = 287/443 (64.79%), Query Frame = 2
Query:  407 FSPDLLRIYYARLFPYEQMYRWLGYS-NMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQAKKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVPEDVRETLHGRW-KIGETS-PEEKWAELNDELDKRFRKQQGNGKRAKAVDKSSTPEQWRFEVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSSDKTDMKGYAKRFEDTFLKGLYKGIRAKKRDRAERVAAVTTAF 1726
            F  DLLR+YYARLFPYEQM +WL Y  +  AS P   G   A         KRE S T+ DDVYIRYQCF D K  ++ + K+QPHKIDIGAVF   PK  +HL++K   F+P ERELVFDIDL+DYDDVRTCC GA +C +CW YMT A  V +  LREDFGF+HI+WVYSGRRGVHCWV D  +R LTNE R A+  YFSVV GN+N AKK ++  P+HPSL RAY+ LEPLF++H+I E+GQ LL+ P  W KLLAT+PED+ + +   W + G+ S P +KW  L     K        G  AK   ++   E W++EVV  H YPRLD NVSK RNHLLKSPFA HPKTGRVCVP D  +   FDP  V TL  L +QID   +D       V   +KTD+K   + FE +F+  L K +   +RD  E+ AA+   F
Sbjct:   16 FDADLLRMYYARLFPYEQMCKWLAYQPHGDASTPVGTGSTLA---------KRELSLTLADDVYIRYQCFGDAKAMKELMTKRQPHKIDIGAVFNASPK--DHLSIKN--FRPEERELVFDIDLSDYDDVRTCCQGATVCRKCWQYMTCACRVCESSLREDFGFEHIMWVYSGRRGVHCWVGDAESRKLTNEARLAIIKYFSVVGGNENSAKKTDLQAPLHPSLERAYKLLEPLFIKHVIPEDGQKLLASPEHWSKLLATLPEDIADQIAKHWARAGDASTPAQKWDAL-----KGLCASPDRGSSAKKQKRAQVDELWKYEVVFTHCYPRLDENVSKHRNHLLKSPFAAHPKTGRVCVPFDAKQCAAFDPTAVVTLKDLAKQIDASTED-------VPDLEKTDLKHAVRFFEKSFIDPLLKSLHKGQRDEKEQQAAMVGDF 433          
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: A0A7S3ZVL9_9STRA (DNA primase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVL9_9STRA)

HSP 1 Score: 434 bits (1115), Expect = 5.440e-142
Identity = 228/442 (51.58%), Postives = 285/442 (64.48%), Query Frame = 2
Query:  407 FSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQAKKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVPEDVRETLHGRWKIG--ETSPEEKWAELNDELDKRFRKQQGNGKRAKAVDKSSTPEQWRFEVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSSDKTDMKGYAKRFEDTFLKGLYKGIRAKKRDRAERVAAVTTAF 1726
            F PDLLR+YYARLFPY+Q  +W+ Y++      D  G    +       ++RE S T+ DDVYIRYQCF + KE +  + K+QPHKIDIGAVF   P  R+HL+VK   F+P  RELVFDIDL+DYDDVRTCC GA +C +CW YMT AV+V +  LREDFGF+HI+W+YSGRRGVHCWV D+ AR LTN+ R A+  YFSVV+GN+NQAKK  +++P+HPSL RAY  LEPLF+EH+I E GQGLL+   RW  LL T+PE++   +   W+    +TSP EKW  L          Q      AK   ++S PE W++E V    YPRLD NVSK RNHLLKSPFA HPKTGRVCVP D  KV  FDP  V TL  L  ++DQ+  D      +V   DKT +    + FE  FL  + +     +RD AE  AA+   F
Sbjct:   19 FDPDLLRLYYARLFPYDQWCKWMAYNS------DEPGTGSQL-------ARRELSLTLADDVYIRYQCFTNAKEMKTLMTKRQPHKIDIGAVFNCVP--RDHLSVKN--FRPESRELVFDIDLSDYDDVRTCCQGATVCKKCWQYMTCAVKVCESALREDFGFEHIVWIYSGRRGVHCWVCDETARELTNDARLAIIKYFSVVSGNENQAKKTQLSSPLHPSLERAYRLLEPLFVEHVIGENGQGLLASSERWETLLKTLPEEIGGQISKHWEKNGNDTSPLEKWEALKGLCVSEKPNQ------AKKQKRTSVPELWKYETVFSQCYPRLDENVSKHRNHLLKSPFAAHPKTGRVCVPFDAKKVSTFDPTTVVTLRQLAYELDQHSGD------DVLDLDKTSLAHSVRFFEKDFLHPMMRAWGRARRDDAEYAAALKGDF 431          
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: K3WL83_GLOUD (DNA primase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL83_GLOUD)

HSP 1 Score: 425 bits (1093), Expect = 1.000e-138
Identity = 226/445 (50.79%), Postives = 284/445 (63.82%), Query Frame = 2
Query:  401 EAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQAKKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVP-EDVRETLHGRWKI--GETSPEEKWAELNDELDKRFRKQQGNGKRAKAVDKSSTPEQWRF-----EVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSSDKTDMKGYAKRFEDTFLKGLYKGIRAKKRDRAERVAA 1711
            E FS DLL++YY RLFPYEQM +WL Y    +                 FF +RE SFT+E+D YIRY+ F + +E +  + K  P KIDIGAVF++ P  ++   V    F P ERELVFDIDLTDYDD+RTCC GA IC++CW +M  AV+VMDV LREDFGF+HI+WVYSGRRG+HCWV+D+ AR LTNE R AV  Y S+V GN+N  +KV++  P+HPSL RAY  LEP+F + I+  EGQG+  +  +W KLL  VP ED+R  L+ RW     ++SP EKW EL D ++K   K Q N KR    +               E+V  + YPRLD NVSK RNHLLKSPFAVHPKTGRVCVP+D + +  FDPF VPTLG LQ +++Q     G     VS  ++T MK Y + FE T LK L    + K+RD  E  AA
Sbjct:    4 EEFSADLLQLYYDRLFPYEQMAKWLTYDGGES-----------------FFFRRELSFTLENDTYIRYKSFHNAEEMKASMTKTLPFKIDIGAVFSVSPADKSK--VNASDFVPEERELVFDIDLTDYDDIRTCCEGASICSKCWQFMIAAVKVMDVSLREDFGFEHIMWVYSGRRGIHCWVSDETARQLTNEARTAVVQYLSLVEGNENSKRKVHLKDPLHPSLDRAYRLLEPMFEDIILGPEGQGIFCEEKQWVKLLDMVPDEDLRSNLNARWSAPSNDSSPREKWLELVDGVEKILAKNQLNNKRQSVGNDQRKRNLMELKTCLQEIVFAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPVDASTIEAFDPFAVPTLGQLQDELNQDSTMEG-----VSEMERTSMKDYVRFFETTLLKPLDLAAKQKQRDVKESNAA 424          
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: H3GLH5_PHYRM (DNA primase n=4 Tax=Phytophthora TaxID=4783 RepID=H3GLH5_PHYRM)

HSP 1 Score: 422 bits (1084), Expect = 2.150e-137
Identity = 230/456 (50.44%), Postives = 283/456 (62.06%), Query Frame = 2
Query:  398 REAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQAKKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVP-EDVRETLHGRWKIGE--TSPEEKWAELNDELDKRFRKQQGNGKRAKAVDKSSTPE---QWRF----------EVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSSDKTDMKGYAKRFEDTFLKGLYKGIRAKKRDRAERVAAVT 1717
            +E FS +LL++YY RLFPY QM +WL Y                     +FF +RE S+T+E+D YIRY+ F   +E +  + K  P KIDIGAVF++ P  +    V    F P +RELVFDIDLTDYDD+RTCC GA ICNRCW +M  AVEV++  LREDFGF+H+LWVYSGRRG+HCWVAD+ ARAL NE R AV  Y S+V GN+N A+KV +  P+HPSL RAY  LEP+F   I++EEGQG++S    W KLLA VP ED+R  +  RW      TSP EKW EL D +DK+  K   N  R+ +  K   P      RF          E+VL + YPRLD NVSK RNHLLKSPFAVHPKTGRVCVPID + +  FDPF VPTLG L  ++D             S +  T MK Y   FE +FLK L    + K+RD  E  AA+T
Sbjct:    3 QEDFSAELLQLYYDRLFPYRQMTQWLSYDG-----------------GEEFFFRRELSYTLENDTYIRYKAFHTAEELKSSMSKTLPFKIDIGAVFSVSPADKGK--VSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVEVLNAALREDFGFEHLLWVYSGRRGIHCWVADEGARALENEARSAVVGYLSLVEGNENSARKVKLREPLHPSLDRAYRLLEPMFEGIILSEEGQGIMSSEKEWAKLLAMVPDEDIRANMTRRWGATNCSTSPGEKWRELRDAVDKQVLKN-ANAARSGSSLKRPAPNGDANKRFAAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDVSSMEAFDPFKVPTLGQLHEELD-------------SDAPDTSMKEYVDFFESSFLKPLAVAAKRKERDARESDAAMT 425          
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: A0A067BVH8_SAPPC (DNA primase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BVH8_SAPPC)

HSP 1 Score: 419 bits (1077), Expect = 1.960e-136
Identity = 228/447 (51.01%), Postives = 286/447 (63.98%), Query Frame = 2
Query:  401 EAFSPDLLRIYYARLFPYEQMYRWLGYS-NMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQAKKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVP-EDVRETLHGRWKIGET--SPEEKWAEL----NDELDKRFRKQQGNGKRAKAVDKSSTPEQWRFEVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSSDKTDMKGYAKRFEDTFLKGLYKGIRAKKRDRAERVAAVT 1717
            E+FSP+LL +YY RLFPYE M +WLGY  +M    P TE             ++REFSFT+E+DVYIRY+ F D  EF+ +++K  P KIDIGAVFT+ P  +    V    F P ERELVFD+DLTDYDD+RTCC  AKIC RCW +M  AV+V+D  LREDFGF+H++WVYSGRRG+HCWV+D  AR LTN+ R AV  Y + V GN+N  +KV +  P+HPSL RAY  LEPLF + I++++GQG+LS P  W KLL  VP ED+R T H +W    T  SP  KWA L    +D L  + RKQ G+ KR      +  P     E+V  + YPRLD NVSK RNHLLKSPFAVHPKTGRVCVPIDP K+  FDP  VPTL  L+RQ+      +GE  ++V          Y K F+  F+  +   +  +K+  AE  AA T
Sbjct:    4 ESFSPELLGLYYDRLFPYELMTKWLGYDCSMDKGGPGTE-----------LLARREFSFTLENDVYIRYKAFRDADEFKTEMKKLMPFKIDIGAVFTVSPADKGK--VDAAKFVPEERELVFDVDLTDYDDIRTCCQDAKICARCWRFMVAAVKVLDTALREDFGFQHLMWVYSGRRGIHCWVSDYTARMLTNDARSAVVQYLTTVEGNENTKRKVVLRDPLHPSLERAYTILEPLFHDIILSDDGQGILSSPEHWKKLLEMVPDEDIRATFHNKWLKTTTTESPATKWANLKAAIHDALHSKKRKQMGDDKRRLLC--TCIP-----EIVFAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDPRKIDIFDPDTVPTLADLERQL------NGEATEHVKP-----FTDYIKLFDAKFIHPIQLALIKQKKVLAETQAAAT 419          
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: K8Z712_NANGC (DNA primase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z712_NANGC)

HSP 1 Score: 420 bits (1080), Expect = 2.660e-136
Identity = 212/392 (54.08%), Postives = 272/392 (69.39%), Query Frame = 2
Query:  395 NREAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGND-NQAKKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVPEDVRETLHGRWKIGETSPEEKWAELNDELDKRFRKQ-QGNGKRAKAVDKSSTP----EQWRFEVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQID 1552
            N + FSP+LLR +Y RLFPY+ M++WL Y N P +  D   I +      D+F+ REFSFTI DD+YIRYQ F D  E E  +QKKQPHKIDIGAVFTLPPK  +H  VK  AF+PVEREL+FDID+TDYDD+R+CC+GAKIC +CW +MTMAV+V+D  LREDFGF++ILWVYSGRRGVHCWV D  ARAL+N+GR AV +Y S+  GN+ ++ K   ++ P+HPS  RA++ LEP+F   ++ E GQG+L   + W  LL T+P++       R     T+ +++W E+  ++         GN +R     ++       + W++EVV ++ YPRLDVNVSKG NHLLKSPFAVHPKTGRVCVPIDP  V  FDPF VPTL  L  QID
Sbjct:   19 NDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDN--DAAHIVR------DYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPK--DHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQID 400          
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: A0A1V9ZZI9_9STRA (DNA primase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZI9_9STRA)

HSP 1 Score: 415 bits (1066), Expect = 7.340e-135
Identity = 214/442 (48.42%), Postives = 284/442 (64.25%), Query Frame = 2
Query:  401 EAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQAKKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVP-EDVRETLHGRWKIGETSPEEKWAELNDELDK--RFRKQQGNGKRAKAVDKSSTPEQWRFEVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSSDKTDMKGYAKRFEDTFLKGLYKGIRAKKRDRAERVAAVT 1717
            EAFSP+LL +YY RLFPY+QM  WLGY+ +                  +   +REFSFT+E+D Y+RY+ F D  EF+  ++K QP+KIDIGAVF++     +   V    F P ERELVFD+DLTDYDD+RTCC  A IC RCW +MT AV+V+D  LREDFGF+H+LWVYSGRRG+HCWV+D  +R LTNE R AV  Y +VV GN+N  +KV +  P+HPSL RAY  LEP+F + I++E GQ +L  P  W KLL  VP E++R  LH +W    + P  KW+EL   ++   + +K++ N +R + +           E+VL + YPRLD NVSK RNHLLKSPFAVHPKTGRVCVPID  K+ +FDP  VPTL  L+R+++  D     + KN  +        Y K FE +F++ + + +  +K+  AE  AAVT
Sbjct:    3 EAFSPELLALYYDRLFPYDQMTNWLGYATITGP--------------TELLYRREFSFTLENDQYLRYKAFRDADEFKSAMKKLQPYKIDIGAVFSVSVSPADKGKVDANKFIPEERELVFDVDLTDYDDIRTCCKEANICKRCWQFMTAAVKVLDTALREDFGFQHLLWVYSGRRGIHCWVSDYPSRMLTNEARSAVVQYLTVVEGNENTKRKVILKDPLHPSLERAYSILEPMFYDVILSESGQDILGSPDSWSKLLEMVPDEELRSNLHNKWLNNSSPPRAKWSELKASVEAIIKDKKRKINDERRRNLRTCLA------EIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDARKIDDFDPMQVPTLLDLERELNAPD-----DKKNAQT-----FANYVKFFESSFIQPIQRSLIKQKKTLAEAQAAVT 414          
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Match: A0A8K1FFX1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFX1_PYTOL)

HSP 1 Score: 414 bits (1064), Expect = 2.120e-134
Identity = 222/447 (49.66%), Postives = 278/447 (62.19%), Query Frame = 2
Query:  401 EAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDTEGIPQAVEEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLREDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQAKKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATVP-EDVRETLHGRWKI--GETSPEEKWAELNDELDKRFRKQQGNGKRAKAVDKSSTPEQWRF-----EVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSSDKTDMKGYAKRFEDTFLKGLYKGIRAKKRDRAERVAAVT 1717
            E FS DLL++YY RLFPYEQM +WL Y                      +  +RE SFT+E+D YIRY+ F +  E    + K  P KIDIGAVF++ P  +    V    F   ERELVFDIDLTDYDD+RTCC GA IC +CW +M  AV+VMD  LREDFGF+HI+WVYSGRRG+HCWV+D+ AR LTN+ R AV  Y S+V GN+N  +KV++  P+HPSL RAY  LEP+F E I+++EGQG+     +W KLL  +P ED+R+ L  RW      +SP EKW E+ D ++K       N KR            +       E+V  + YPRLD NVSK RNHLLKSPFAVHPKTGRVCVP+D   + EFDPF VPTLG LQ ++++ DK  G      S  D+T MK + K FEDT LK L    + K+RD  E  AA+T
Sbjct:    4 EEFSTDLLQLYYDRLFPYEQMTKWLAYDGGET-----------------YLFRRELSFTLENDTYIRYKAFHNADEMRSSMTKMLPFKIDIGAVFSVSPADKGK--VNANDFTADERELVFDIDLTDYDDIRTCCEGASICPKCWRFMVAAVKVMDAALREDFGFQHIMWVYSGRRGIHCWVSDEFARGLTNDARTAVVQYLSLVEGNENAKRKVHLKEPLHPSLDRAYRILEPMFEELILSDEGQGVFCSEKQWIKLLDMIPDEDLRDQLLHRWSSLSCSSSPREKWMEVVDGVEKIVAMGLNNNKRQSLQSDQRKRNIYELRTCLQEIVFAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPVDADNIEEFDPFTVPTLGQLQDELNKNDKAGG------SDIDRTSMKEHVKFFEDTLLKPLEVAAKQKQRDAKESNAAMT 425          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.119.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Y8_ECTSI2.520e-29385.53DNA primase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A836CNE6_9STRA2.830e-15051.92DNA primase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
F0Y4H5_AURAN4.150e-14552.82DNA primase n=1 Tax=Aureococcus anophagefferens Ta... [more]
A0A7S3ZVL9_9STRA5.440e-14251.58DNA primase n=2 Tax=Pelagomonas calceolata TaxID=3... [more]
K3WL83_GLOUD1.000e-13850.79DNA primase n=1 Tax=Globisporangium ultimum (strai... [more]
H3GLH5_PHYRM2.150e-13750.44DNA primase n=4 Tax=Phytophthora TaxID=4783 RepID=... [more]
A0A067BVH8_SAPPC1.960e-13651.01DNA primase n=2 Tax=Saprolegnia TaxID=4769 RepID=A... [more]
K8Z712_NANGC2.660e-13654.08DNA primase n=3 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A1V9ZZI9_9STRA7.340e-13548.42DNA primase n=1 Tax=Thraustotheca clavata TaxID=74... [more]
A0A8K1FFX1_PYTOL2.120e-13449.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:414871..423953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7Y8
Preferred namePRIM1
PFAMsDNA_primase_S
Model size2345
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K01267,ko:K02684,ko:K16733
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006273,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019725,GO:0022402,GO:0022616,GO:0030880,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0051276,GO:0055029,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902295,GO:1902318,GO:1902494,GO:1902969,GO:1902981,GO:1903047,GO:1990234
Exons11
Evalue4.64e-299
EggNOG OGsCOG1467@1|root,KOG2851@2759|Eukaryota
Ec32 ortholog descriptionDNA primase, small subunit, eukaryotic/archaeal
Ec32 orthologEc-06_009490.1
EC3.4.11.21
DescriptionDNA primase activity
Cds size1443
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03032,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.119.2prot_P-littoralis_Contig191.119.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 415157..423337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789922.5081236-UTR-P-littoralis_Contig191:414870..4151561680789922.5081236-UTR-P-littoralis_Contig191:414870..415156Pylaiella littoralis U1_48UTRP-littoralis_Contig191 414871..415156 +
1680789922.6618292-UTR-P-littoralis_Contig191:423337..4239531680789922.6618292-UTR-P-littoralis_Contig191:423337..423953Pylaiella littoralis U1_48UTRP-littoralis_Contig191 423338..423953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789922.5338326-CDS-P-littoralis_Contig191:415156..4153301680789922.5338326-CDS-P-littoralis_Contig191:415156..415330Pylaiella littoralis U1_48CDSP-littoralis_Contig191 415157..415330 +
1680789922.544009-CDS-P-littoralis_Contig191:416527..4166671680789922.544009-CDS-P-littoralis_Contig191:416527..416667Pylaiella littoralis U1_48CDSP-littoralis_Contig191 416528..416667 +
1680789922.5586216-CDS-P-littoralis_Contig191:417200..4173061680789922.5586216-CDS-P-littoralis_Contig191:417200..417306Pylaiella littoralis U1_48CDSP-littoralis_Contig191 417201..417306 +
1680789922.5708828-CDS-P-littoralis_Contig191:417760..4179071680789922.5708828-CDS-P-littoralis_Contig191:417760..417907Pylaiella littoralis U1_48CDSP-littoralis_Contig191 417761..417907 +
1680789922.5813687-CDS-P-littoralis_Contig191:418354..4185431680789922.5813687-CDS-P-littoralis_Contig191:418354..418543Pylaiella littoralis U1_48CDSP-littoralis_Contig191 418355..418543 +
1680789922.5944633-CDS-P-littoralis_Contig191:419002..4190921680789922.5944633-CDS-P-littoralis_Contig191:419002..419092Pylaiella littoralis U1_48CDSP-littoralis_Contig191 419003..419092 +
1680789922.6042342-CDS-P-littoralis_Contig191:419807..4199001680789922.6042342-CDS-P-littoralis_Contig191:419807..419900Pylaiella littoralis U1_48CDSP-littoralis_Contig191 419808..419900 +
1680789922.616071-CDS-P-littoralis_Contig191:420690..4207651680789922.616071-CDS-P-littoralis_Contig191:420690..420765Pylaiella littoralis U1_48CDSP-littoralis_Contig191 420691..420765 +
1680789922.631278-CDS-P-littoralis_Contig191:421243..4213851680789922.631278-CDS-P-littoralis_Contig191:421243..421385Pylaiella littoralis U1_48CDSP-littoralis_Contig191 421244..421385 +
1680789922.6425104-CDS-P-littoralis_Contig191:421936..4220731680789922.6425104-CDS-P-littoralis_Contig191:421936..422073Pylaiella littoralis U1_48CDSP-littoralis_Contig191 421937..422073 +
1680789922.6514082-CDS-P-littoralis_Contig191:423187..4233371680789922.6514082-CDS-P-littoralis_Contig191:423187..423337Pylaiella littoralis U1_48CDSP-littoralis_Contig191 423188..423337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.119.2

>prot_P-littoralis_Contig191.119.2 ID=prot_P-littoralis_Contig191.119.2|Name=mRNA_P-littoralis_Contig191.119.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=481bp
MPSSMEVDKENVGSAGASGAESKAAPVRSKGVSADDNREAFSPDLLRIYY
ARLFPYEQMYRWLGYSNMPASLPDTEGIPQAVEEQADFFSKREFSFTIED
DVYIRYQCFADQKEFEQQVQKKQPHKIDIGAVFTLPPKARNHLAVKPGAF
QPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLRED
FGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFSVVAGNDNQA
KKVNVATPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSRWGKLLATV
PEDVRETLHGRWKIGETSPEEKWAELNDELDKRFRKQQGNGKRAKAVDKS
STPEQWRFEVVLEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDP
AKVREFDPFVVPTLGHLQRQIDQYDKDHGEEAKNVSSSDKTDMKGYAKRF
EDTFLKGLYKGIRAKKRDRAERVAAVTTAF*
back to top

mRNA from alignment at P-littoralis_Contig191:414871..423953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.119.2 ID=mRNA_P-littoralis_Contig191.119.2|Name=mRNA_P-littoralis_Contig191.119.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=9083bp|location=Sequence derived from alignment at P-littoralis_Contig191:414871..423953+ (Pylaiella littoralis U1_48)
CCACCAACGACTTGTCGTTCATTCCACCGTCACACAAACAAACAAGCGAA GGACCCAGCATAGGCCCCTGGCAGCCGAACAAGTGTACTGGTCTTGGAGG TTTCTGAGTTGCGGCTGGTCTAGACTTGCACTTTTAAGCATCTCTGTTGT TGCTTACCCGTGGTTTGCTTCACTGAGGTTTTCTGTCTCCTGGATCGAGA GACAAACCTTGCGAAGCACTCTCTTCTCCGCTACTGCTCTAGCAGCAACG CCACCAGCACTAGCAGTAACTTGGTCTGCTGTAGCAATGCCAAGTTCCAT GGAGGTGGACAAGGAGAATGTGGGATCAGCGGGTGCTTCCGGTGCTGAAA GCAAAGCAGCTCCCGTGAGGAGCAAAGGGGTCAGCGCCGACGACAATCGC GAAGCCTTCAGCCCCGATCTCCTTCGCATCTACTATGCCCGCCTGTTCCC CTACGAGCAGGTAGGTGCTGTGTGTGTACCCCTGTAACGAGTGAGAGCGT GGTACAGCAGTTTGTCTACCTTTCTCCTTGGTGTGTGGCTATCCCGAGTA TTGCACGCGATTGCTGTGGTGCTGTTGCTGGATACTCGAAAATGCTCCAA ATTCAGCGTGATATTCATCCAAATGATACTACTTTCCGAGGGCAGCAGTA GATGCTGTAAAGAGTGTGGGTTTGATTTTTTTTGAATTTCGAGCGCGCAA CCGGCAAAGCTTTCGTCATCCCCGTTGAACCCATCAACATTCCACACAAC AATTCCGAATACCCCAACCATTACTCTCCCACCCTGTTACAAGTACAATC TATCAGGCACTGCTCCTGCTATATTATTACTCTTCTTGCGCTGTCGCAGT TCTCTGTTCTCTCATGCCCTTGACACATGTTGAACGATATTGTGGGTCAC ACAAGATACCACCCCCCTAAACCCTAGACCGATTCTCAAGGCTCGAAGCT CGGATGCTCGACAGCAGTTAAGAGGGTGCCAACATCAACCGATGCGTTTT CCCGAAAAGATGAATGGTTTGGACGAGATAGACGGTTCCAACGCCGATCA CCTTTCTTTCTCGGCATCGACGCTATTTTTGTTCCTGCTCTAGGAAAGAC TGAGCTAAACAAAAGTCCTCCCCATGCTAGTACTGCTCCAGGGGTCCCAT GGTATCACATGTTACCTAATTTTATTACCGCAGCGGCAGCACACAGCAGT CAAGTACATTCGTGACGTCAAGTACATTCGTGACTAGGTGTCCATAAGTG GAACTTGCCGTATGTTTACTCCCCTCCAAGTCACCTTTACCGCCAGCCAA AGAAAAACATGAGACAGCTCAAGATATTCGTACACACTCACTGCTTTACC GTGTGATATGCTACAATGTAGAATTCTTGGATTGTTTTCAGCCCCTACAT ACGGACGGCAGGTTATTCTTCGTATCTGTGTGCTTTTGATGCGCGTACAC AGCAGTGTAGCAGTTGCCACAACCGACTGTACTTTAGCGACGAATATCAA CGTGTCTGTTTAGCAGAGAGCACTGTATCGCTACAACTCCGTGTTGTGTT GAGTGAATCATGTTGATTGAACTGCACTAATCCTCTATCTTTTCGCACCC TGCGGTTCGGCTGGGACTGCGATTTATCCGTTGGCGCGACTGATCGATGG CATGCAGATGTACAGATGGCTTGGCTACTCGAACATGCCGGCCTCGCTAC CCGACACGGAGGGGATCCCGCAGGCCGTGGAGGAGCAAGCGGATTTCTTT TCGAAGAGAGAGTTCTCCTTCACGATCGAGGACGATGTGTACATTCGGTG AGCCCACTTCTCTGTTGCACCACATGCCTTTCAACCACATGACCAAAACT AAACCTTCGATCGAGCCAGAGTAGCGACTGCTGTGCAGACAACCAGCGCA AGTATGGCTGCAACTCGCATCATATCATGAAGGACAGGCGCCCCACTTCA TATACCAGAACCGGCATTGCGTGTGGCAGGCACGCCTTCGCAGCTCAACA CTCTTCCCCTCGTCACAGCAAGTTTTGATACTTTTCTCGCTCATTCATGA AAGACTACGAACTGGACCGCGGCCCGAAGACACCGCTGTTCGTGAAGACT GGGCTTCATAAACCACTTACTATTTTACTGCATCTGCCATTCCCCGATCA AGCAACATTTTCGTGGAGTTGCCACTGACGGATGTAATGCGTGAGCGCGG CTGTATTTTTGCACGTTTGGGTCCTGAGGAGCATGGAGCTGCCACAGATC GCGACCATCTTGAGGGATGTAGTCCGAATGTACTCCTGCTTACATTACAC CTTTGGTTCCTTCGGTATGGTGTGTGATAGGTACCAATGCTTCGCGGACC AAAAGGAGTTCGAACAGCAGGTGCAGAAGAAGCAGCCCCACAAGATCGAC ATCGGGGCTGTGTTCACGCTTCCCCCCAAGGCAAGGGTTCCCGTTGTCGG CTTTTTCTGCAGGCCACGCCTGGAACATGCTGTGCACGTGTCCAGGGTGC CAAGTTTACGGCGTATGTTTTGTTTTTGCTGTGGTTCTACAAAATTTGGT TCTTTGTGTGGTGTATGTTTTTTTCTGTGAACAATGGTGGGCACGTTTAC CCCTTGTGGTAGTACCATGTGTAAGATGCACACGATACGACACGGTTGAA GGTTTGGTTCTGCATAAAGTGCCCCGTCCTCTTCTGATTGTTGGGCCGGT CACCTTTACGTTAGTGTCGTGCTATTCGTGCCATGTTTCTTTGGGACGGG TGGCATTGCTCGAGTTCTAGGGCTGTGTTGCTCGGAGTGTGTTGTCATGA CCGCCGCGGCTCGTGCAACATCGAAATGAAAGCGCTTCCGTATCCTCTCG TGCGTCCACTCGTCCTCCCTCCCTCCCCCCCTCCTCTCAGAATCACCTGG CGGTCAAGCCGGGCGCGTTTCAGCCGGTGGAGCGGGAGTTGGTTTTCGAC ATCGATCTGACGGACTACGATGACGTACGCACCTGCTGCTCGGGTGCTAA GATTTGCAACAGATGCTGGTCCTACATGACCATGGCGGTGAGTCAAGCAG GTCAACGAGCATGCACTACATTCGCTTTTGATCTCGGAGAACCACTGGTC TTGGCAGGGTTTCCGTTCGCCTTTTGTTTGATGCTGCTCGATCGGGTGTC GCGTCTTGCGCGGTCAACTCCCGGAAAAGTTTAAAAAATCCAGCTCCCAG TTCGTAGACGTCCGACCATGGGAGAACCAACACGCCTGCGCTTGCATCTT GCTCACCCAGGGTGCACCTTTGACATGCGCCTTATATTACTCGCCCGTTT AAGATAAAGGGGCGTCTATGTAGGGCACCAAATCATATCGGGACTGTCAG GGTTTTGTCCTTTGCCCGCAAGCAAGGACGTTTGATTTTGAGTTGGACCC CCTTTAACATCATCACCCGGAGCCGAGCGCCCCAATACTAACGACACGAG TGATCGTTTCCTTTTCATCTATCGAATGCCGTAGGTAGAGGTTATGGATG TAGGGCTGCGGGAAGACTTCGGCTTCAAGCACATCCTCTGGGTCTACTCC GGTAGGCGAGGAGTTCACTGCTGGGTGGCAGACGACGCCGCAAGAGCTTT GACCAACGAGGGCCGCGGTGCTGTAGCGGACTACTTCAGTGTCGTCGCTG GTAACGACAATCAGGCCAAGAAGGTGAAACAGATGCGGTGTTCGATGCCA CTCCCGCAGACTGTGGTATGTACCTGGTAATATGTGAGCACGATGACGAA ACGATAGCGTGAAACGTCAATTGATAGGGAAAGGGTTGCCACAGCCCGTA GTCTGATATCTCCAGCGCCGCCGCTGGTAGCCGTTCTAGGTTCAAAGAGA CCAAATATTATTTGGTACTTCATCACGATGCCTGTCGTCGGTTGGACATA TTTACCTTGGCACGACAGCGCGAAAGGTTTGAACGTCCGTCACGATCGGT GTGAGTGTTCGCGGCTCCTTGCCTTTTCAGCATCGTGGCGCGTAGCCGGA CCCGACCGGCAATCGGGAACGGTTCCGAAATATATGCCGCCGTCGTTATT ATTGCTGCTGCTGCTCTCTTTGGTATGCTTATCTTGTGCTTTGTCTTGTT GTATGTTTATTTTGTGACGTGAATTCAACCAGGTAAACGTTGCGACCCCG ATCCATCCGTCATTGCGGCGAGCGTACGAGACGTTGGAGCCCTTGTTCCT GGAGCACATCATCACAGAGGAGGTTCGTTGTTGCTTCGAACCCTCTGTTT GCACTACCTTTGCTCGTAGATCATCTTTGATTGTCTGACTATGCCGGTTG TTGCACGCCAGTTATTCTATCATGGTGTATGACTGAAGCTACCGGAGGAG CAACGAACGTGGTCAGTGTCGGAAACTCTCATCCACGAGGGAGGGCGTCA AAAGGCCGTCATTCGCTCGTTTGTTCGTCCGTTAGGCGGTGGAATTACCA CAAGTATTCGTTCGGTGGAATCGGCGTAACGAGCTACCGACGCCGGTACT TTAGCGTAGCCTGGTTCCAGCGCATGCATCCAAAGTGTGTCTCGTGGTGC AAGCAATGACACGTCAGGGTACAGCAGTCACGGAAAGGGCAGCAGGCCAC AAAGACCAAGATACACCTGTTGCTTCCGGCATGTGAGTGTCGGGCAATGC CAGAAGAAAGTCCGCCGGATCACAGGGTACGCTCGCTTTGTTTTGGGACG CGTTGGTCATCCGCCCGCGATGCTGTCCAACCTGTACGGAACGACTCTGC TCGTTACAGTCCCTCGATGACCGCTGTTCCACTGAAGCCGCATCAAAGGG CTTGCCCTGGTCTTGCTCAGCCCAACCCAAATATTACCTGAAAGTCTTAG TAGGGGTTACCTCGTGTACTACTCGAACACACGTGAAAATCGATTGTGAA ACCTTTGTGACCGTTGTTTTTGTAACGTCATGTTTAGGGGCAAGGGCTGC TGTCGGATCCGTCAAGATGGGGGAAGTTGCTGGCGACAGTACCGGAGGAC GTAAGAGAGACTCTGCACGGGAGGTGGAAGGTCAGTTTCCTCGTCGGCCA GCGCCACAATCACGTTGCTTTTTTGTACAGCGTTCGTGCTGTCGAACTCA GCTCTCGAGTTGCCACGAATTAGGTATCAAGTATTCGGCAAAATGTTTGG CCAAAAAATGATCACCTGAAAACACAAAGAAACAAAAATTCAAAATCACT TGATTTTAGATTGCCACCAAACGATACTTTAGTCGAGATGACCTCAGCCA CCACCAACTACGACTTGCCTCTTGACACGCTTACCACCCGAACAGGTGAT ACTTACCATGATACCTAAAGGCTGCAGACCCCGACATGATGTTTTTACTT GCATATAAAAAAGGCCATCAAAGTACAAAACACTGTTATTTTATCGCTAA TGATGTTCGTGTGCCCTCACGTTAAGTCACAACGCGAGAAATGCAAGCCC AGTGTTGAGCGCAGGATGCTTGCTGCGTCGCCTGGGTCGCAAGAAGCGTC CGTCAATACTTTGATGCTGCTTTTGCGGCGGTGGGTTGTACTCTACTGAC TGTCGCCACCGCTTGTGCTGTTCGTGCGTGCCCTATGACATATTTATCCA TCCTTGTTGCCCTATCAGCCTTGTTTTTACCCACCCTTGCGACACCTTGC GATCACACCACTCATGTGACTGCGTCTGGTGCGCGGAGTTCACAATCGTC TGTACTTCGTAGTAGATAGGGCGATCTTCTACAGCAGTACTCCAATGCTG CCATGTCACGTTTACTGCTGTTGCTATTGCTGTGTGTGGTGCTGGTTGCG ATTGATGATACTTGTGGAAGATCGGAGAGACGTCGCCGGAAGAAAAGTGG GCCGAGCTAAACGACGAGCTGGACAAGAGGTTCCGAAAGCAGCAGGTATG CTACTCAACCCTCTGAAACGGACAACAGCTATTTTATGGACATCGAAAAG GCGCCCTGATGTGCGCGTGGTATATGCAACAGCAACGGGTGTACTGCTGT ACGCTTTTGTTGTCGTCTACGTTGTCTGAACGACAGCAGCACGGAGATAA TCGTCGACGGCACGAAAAGGCAACCTTTGTCTGCAAGCTGAAAGCGTATC GTAATCTTGATGCGTATGCAGTAAGTATAAATGAAGTCACAAACTAGCGC CACTTGCGCGCAGGCACCGTTGATTGACGCTGATTTCTTGGATTGCGCGG GAATAGCCTTGTGCTGTCTCGTGTAGCTTTGCGTTTATAACAACGCACTA AAGAGGGCCAGTCGCGTACTATACCGTCCAGTGCATTAATTGTGGGTCTG TACGGACATTGCCCTTGGCCGTGTCGCTTGTTTGTTGGGTTGACGTTGGT GTCGGCGTTGGTGTGATCTGCAGGGGAATGGGAAGAGAGCTAAGGCGGTG GACAAGTCCTCTACGCCGGAGCAGTGGCGCTTCGAGGTGGTGTTGGAGCA CACTTACCCGCGTCTCGATGTCAACGTTTCCAAGGGCCGAAACCATCTTC TCAAAAGTCCCTTCGGTGAGTGACGACGGCTGTTCGGCGGACAGACTGGC TCTCCGATGTGCGGGGCCTGACTTGGACACCTTTTCCCATCAACATCCCC AAGAGTCTCTTTGGCAAAAGGGTTGAAGGTAGTCTTTGCCCTGAGAACAC TACTGAACGCCTGTTTTTTGTTGCGGGCGTCATGTTGAAGACCAAACGTT TCGTTGTTTTCTTGCCCTCTGCTCAATTTGCCAACGGAAATGCTCCCCAT TGTGATCTTTGATGTCGACGTTTGCCAAGCCCCCAGCGAAATATATACGG TACCAGGCGTTACAATGTCCGGGCACAGCAGCAGAAGTCGTGAATTGGGT GTGGGTCAGCTCATTGTCGACCTTGTCCCACTCGATCCATCAGTTTGATG TTGTTGTGCTCCACGTGTAGTCCGTTTCATCTCCGGGTGTCTTTCGCTTC ATTCACTCCTCCCATTTCATGGCGCTTCCTGCCTGTGATCCATCCCATGA TACGCCCTAAAATCCCCCACCTGGTACTCCTGCTGTGCGAATCAAAACCT CTGACTTCTGATGCAGCGGTCCACCCCAAGACGGGTCGAGTGTGCGTACC GATCGACCCGGCCAAAGTGCGCGAGTTCGACCCCTTCGTGGTCCCTACCC TTGGCCACCTCCAGCGTCAGATCGACCAGTACGACAAGGACCACGGAGAA GAGGTGGGGAGGGGGGGGGGGGCAATGTGGGGGTTGCTTCCACGTTTAAC TTCAGAGTCGCGGTTTTTCGTGGACCATGTTCATGCTCTTTTGTGAAGTG GTAACTGCGAGCGTGTTCGGTGGAGGGCACATCTGCGATCGGAGTTTAGG TTAGCTTTTGTGTTTGCATTGAATGCTTGATCTTTGGAGAATTTTGTTTT CGTCCTCGTGGATGAAGAGTGGTGGTGAGAAAAAGGAGGAGGAGGAGAGT ATCAACACTTGATTTTTGCCCTCATGGATGTAGGCTGGGCACGTCCACCC CCGTTTGAAACACTGCTTGTACGCGTTCGGGGTATGTATCGCGCCTTTGT TCGTCGATCTACGAATCGTTCTGGGAAACACCACCTGATTTTTGTTTCGA CACTTCTAAAAATAGTTAATAATACAAGTATACTTTCTAGGTCGGCGATA CCTGGCTCCGAATGTTATATCCAGTGTTCGTCATTCTTTCGGACTCACGT GGTCGATCGAGCTGCCAGCTTCGTCCTTCGTATTTTTCTTCGACGACCTT GCGTGAGAGCTCCTTTTCACATCGATAAGTTGGACATCTTGAGTGCTCGT TCTTTGTCAGAGTTCGCCGTGTGTTCATTTCCCGGATAAGGATCACATGC ACTTCTCAGCTTGTGCACCATTTGTCTCTTCGCCAGACGTTGGTTTCTCC CCCTCTCTCGCTGCCTCCCATTCGATGTTGTTGGTCAGGCTTATATGATG TTCTTCGGTAATCAAAGTCCAGGTTAGGTAGTGCTCTTGCTTCCTTGTAC TTGTAGCGCAGTAGTGCGCTGCTTTACATGTTCTGTTCTGGCTTGTTTTC GCTACAACTCACTTCAGTGGCTTGCTTCGTAGTATCATTTCGGTTCGCCA TGGCTGCTCTTCATTCGTTGTGTCACCTCCGCGTTTGCTATTGCTGCTTT TGGCTTTGTCTCATTCCGTTGCTGTGTTGTGACGTGCCTTGCGAGTTGTG CTTCGTGCGCTAAAGCTCGCGTGACTATGTCCCATTACTCGTTGGCCTGT GTATCGTATGGTCATATAATATGTACGTCTGTGCTGCTGCTGCTGTCGAT GCACCCGTGTCGTTCAGGCGAAGAATGTCTCGTCCAGCGACAAGACGGAC ATGAAGGGGTACGCAAAGCGGTTCGAGGATACCTTCCTGAAGGGGCTGTA CAAGGGCATCCGCGCCAAGAAGAGGGATCGAGCGGAGCGCGTTGCTGCCG TCACAACAGCATTTTAATTTTTTTTCTTCCAGCGCTGCAGGAAAGGCGTG CTTGCTCGTATGATGCATCGATCTTCTCTCTCTCTCGGGCTTCCGTTCAT CAATAAACACTGTTCTTTCACCGAAGCTAACGTAAAGGAGTAAGCGCTGT GCCGTTTCGTACCGTTTCGTTGTACAGCAGTATCACTTGAGAGGTACTTC GTACAATACAGAAAACTCTTTTTGGCAACCAATCGTCGTGGTGGTTCAGT CGGTACACCATACCAAGCGGCGGAAAGAGAATATCTCGAGAGTCGGGAAA ATCCCATTCCGAAGCGAATATTCCGAAAGTTAAGGAAATCTCGACCCTAG AGTCGAGGAAGGGAAGGAACGGCCGAACCCTTCGCCGCCCTTCCCGCGAA AAATATATCATCACGCACCCGAAAGGGTAAGTGTAAAAACATGTTCTCTT CTTCCCGTGTGTTACCCCGGCTGATGCGCCCACATGTACCGAAACGGTGT AGGCTGGCGTCCCGAATGGGTGGGTTGCCAATACAAACACACGAAAAAAA CAAAAAAACTCGTTCTTTTACTTACTTGTACAGCAGGAGTAGGATATAGC ACAAGGCCATCACGACGGTTTCATGCATCCGTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig191:414871..423953+

>mRNA_P-littoralis_Contig191.119.2 ID=mRNA_P-littoralis_Contig191.119.2|Name=mRNA_P-littoralis_Contig191.119.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1443bp|location=Sequence derived from alignment at P-littoralis_Contig191:414871..423953+ (Pylaiella littoralis U1_48)
ATGCCAAGTTCCATGGAGGTGGACAAGGAGAATGTGGGATCAGCGGGTGC
TTCCGGTGCTGAAAGCAAAGCAGCTCCCGTGAGGAGCAAAGGGGTCAGCG
CCGACGACAATCGCGAAGCCTTCAGCCCCGATCTCCTTCGCATCTACTAT
GCCCGCCTGTTCCCCTACGAGCAGATGTACAGATGGCTTGGCTACTCGAA
CATGCCGGCCTCGCTACCCGACACGGAGGGGATCCCGCAGGCCGTGGAGG
AGCAAGCGGATTTCTTTTCGAAGAGAGAGTTCTCCTTCACGATCGAGGAC
GATGTGTACATTCGGTACCAATGCTTCGCGGACCAAAAGGAGTTCGAACA
GCAGGTGCAGAAGAAGCAGCCCCACAAGATCGACATCGGGGCTGTGTTCA
CGCTTCCCCCCAAGGCAAGGAATCACCTGGCGGTCAAGCCGGGCGCGTTT
CAGCCGGTGGAGCGGGAGTTGGTTTTCGACATCGATCTGACGGACTACGA
TGACGTACGCACCTGCTGCTCGGGTGCTAAGATTTGCAACAGATGCTGGT
CCTACATGACCATGGCGGTAGAGGTTATGGATGTAGGGCTGCGGGAAGAC
TTCGGCTTCAAGCACATCCTCTGGGTCTACTCCGGTAGGCGAGGAGTTCA
CTGCTGGGTGGCAGACGACGCCGCAAGAGCTTTGACCAACGAGGGCCGCG
GTGCTGTAGCGGACTACTTCAGTGTCGTCGCTGGTAACGACAATCAGGCC
AAGAAGGTAAACGTTGCGACCCCGATCCATCCGTCATTGCGGCGAGCGTA
CGAGACGTTGGAGCCCTTGTTCCTGGAGCACATCATCACAGAGGAGGGGC
AAGGGCTGCTGTCGGATCCGTCAAGATGGGGGAAGTTGCTGGCGACAGTA
CCGGAGGACGTAAGAGAGACTCTGCACGGGAGGTGGAAGATCGGAGAGAC
GTCGCCGGAAGAAAAGTGGGCCGAGCTAAACGACGAGCTGGACAAGAGGT
TCCGAAAGCAGCAGGGGAATGGGAAGAGAGCTAAGGCGGTGGACAAGTCC
TCTACGCCGGAGCAGTGGCGCTTCGAGGTGGTGTTGGAGCACACTTACCC
GCGTCTCGATGTCAACGTTTCCAAGGGCCGAAACCATCTTCTCAAAAGTC
CCTTCGCGGTCCACCCCAAGACGGGTCGAGTGTGCGTACCGATCGACCCG
GCCAAAGTGCGCGAGTTCGACCCCTTCGTGGTCCCTACCCTTGGCCACCT
CCAGCGTCAGATCGACCAGTACGACAAGGACCACGGAGAAGAGGCGAAGA
ATGTCTCGTCCAGCGACAAGACGGACATGAAGGGGTACGCAAAGCGGTTC
GAGGATACCTTCCTGAAGGGGCTGTACAAGGGCATCCGCGCCAAGAAGAG
GGATCGAGCGGAGCGCGTTGCTGCCGTCACAACAGCATTTTAA
back to top