mRNA_P-littoralis_Contig191.118.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.118.2
Unique NamemRNA_P-littoralis_Contig191.118.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig191.118.2 vs. uniprot
Match: D7G7Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y9_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 4.600e-31
Identity = 137/357 (38.38%), Postives = 168/357 (47.06%), Query Frame = 2 
Query:   92 MLNIVRGAREVARARENRKRSSKTS-----------AVGHSNPKQNKRLSRVPGQVGVAVRRDDSSRHPLPAFDSSHVERDRQDDQHEYHAFGGGTTGQSTANLRQASPHIYSRPEDAGPLAVDDTDYSPAAEDLTVDSPEPER--TRAKTVKPSGAFAHPGQ-RLGSSSGAGGGGQSLGSWLLPEPSPKAASKRSNDGRRRQRPLQSATDNSEDFPRGTRTWG-AFAQGQD--------RSRAGGN--SLSTWLEPLPSMATSRKDRRTEPKSGEMSEGAAAEGYESSGGQADDEYAYDDDDETSNDGVDGNAKWMSDRLEGLDPSGAARAKDSWTDRERRNLTSTDVALGTKRKG 1087
            ML IVRGA +VARAR                     A  H N      + R+PGQVGVAVRR D+ R P   FD   V  D + +  + H   G T+ +  A                        +  PA  DLT + PEP    T + T     AFA+PG  R  +++      Q LGSWL P  SPK A+KR     RRQRP Q A D  +        WG A + G+D        R   GGN  +LS WLEP      + + +RT       + G +    E  GG + DE            G DG  +WMSDRLEGLDP+GAARAKDSW+DRERRNLT TD+ALG KRKG
Sbjct:    1 MLTIVRGAEDVARARXXXXXXXXXXXXXXXXXXXXXAAEHHN------VGRLPGQVGVAVRRGDNKR-PRRTFDD--VSGDYEYNPLDVHDGPGPTSAEPAAG---------------------GGNNEPATVDLTSERPEPVGGDTMSNTFA---AFANPGPLRRSNAADQVCAQQLLGSWLQPVASPKKAAKR-----RRQRPSQGAFDEPDVRRNSATAWGGASSPGRDSRGDGCGTRGNGGGNDGTLSAWLEPRQ---PATRGKRT-------AHGTSVAEREPDGGFSGDEGG----------GEDGGGRWMSDRLEGLDPTGAARAKDSWSDRERRNLTCTDIALGAKRKG 299
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BLAST of mRNA_P-littoralis_Contig191.118.2 vs. uniprot
Match: A0A6H5KWK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.020e-29
Identity = 132/347 (38.04%), Postives = 161/347 (46.40%), Query Frame = 2 
Query:   92 MLNIVRGAREVARARENRKRSSKTSAVGHSNPK----QNKRLSRVPGQVGVAVRRDDSSRHPLPAFDSSHVERDRQDDQHEYHAFGGGTTGQSTANLRQASPHIYSRPEDAGPLAVDDTDYSPAAEDLTVDSPEPERTRAKTVKPSGAFAHPGQRLGSSSGAGGGGQSLGSWLLPEPSPKAASKRSNDGRRRQRPLQSATDNSEDFPRGTRTW-GAFAQGQD--------RSRAGGN--SLSTWLEPLPSMATSRKDRRTEPKSGEMSEGAAAEGYESSGGQADDEYAYDDDDETSNDGVDGNAKWMSDRLEGLDPSGAARAKDSWTDRERRNLTSTDVALGTKRKG 1087
            ML IVRGA EVARAR                      ++  + R+ GQVGVAVRR D+ R      D S                  G    +  ++  A     + P   G       D  PA  DL  + PEP      T     AFA+PG    S++    G Q LGSWL P  SPK A+KR     RRQRP Q A D  +        W GA + G+D        RS  GGN  +LS WLEP     + ++  R    +   S+G    G+  SG +   EY              G++KWMSDRLEGLDPSGAARAKDSW+DRERRNLT TD+ALG KRKG
Sbjct:    1 MLTIVRGAAEVARARXXXXXXXXXXXXXXXXXXXXXAEHHNVERLRGQVGVAVRRGDNRRLRRTFDDVS------------------GDYDYNPLDVPDAPGLTSTEPAGRG-------DKEPATVDLASERPEPVGGDT-TSNAFEAFANPGPLRPSNAADQVGAQFLGSWLQPVASPKKAAKR-----RRQRPSQGAFDEPDVRRNSATAWVGASSPGRDDRGDGCSTRSNGGGNDGTLSGWLEPHQPATSGKQTVRGTSVAERGSDG----GF--SGDKGGGEY--------------GSSKWMSDRLEGLDPSGAARAKDSWSDRERRNLTCTDIALGAKRKG 296
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.118.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Y9_ECTSI4.600e-3138.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWK6_9PHAE2.020e-2938.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:411813..414760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1954
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009500.1
Cds size1137
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789922.4078133-UTR-P-littoralis_Contig191:411812..4125381680789922.4078133-UTR-P-littoralis_Contig191:411812..412538Pylaiella littoralis U1_48UTRP-littoralis_Contig191 411813..412538 -
1680789922.4660919-UTR-P-littoralis_Contig191:414669..4147601680789922.4660919-UTR-P-littoralis_Contig191:414669..414760Pylaiella littoralis U1_48UTRP-littoralis_Contig191 414670..414760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789922.4324877-CDS-P-littoralis_Contig191:412538..4127581680789922.4324877-CDS-P-littoralis_Contig191:412538..412758Pylaiella littoralis U1_48CDSP-littoralis_Contig191 412539..412758 -
1680789922.4424005-CDS-P-littoralis_Contig191:413051..4137601680789922.4424005-CDS-P-littoralis_Contig191:413051..413760Pylaiella littoralis U1_48CDSP-littoralis_Contig191 413052..413760 -
1680789922.4518487-CDS-P-littoralis_Contig191:414461..4146691680789922.4518487-CDS-P-littoralis_Contig191:414461..414669Pylaiella littoralis U1_48CDSP-littoralis_Contig191 414462..414669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.118.2prot_P-littoralis_Contig191.118.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 412539..414669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.118.2

>prot_P-littoralis_Contig191.118.2 ID=prot_P-littoralis_Contig191.118.2|Name=mRNA_P-littoralis_Contig191.118.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=379bp
MLNIVRGAREVARARENRKRSSKTSAVGHSNPKQNKRLSRVPGQVGVAVR
RDDSSRHPLPAFDSSHVERDRQDDQHEYHAFGGGTTGQSTANLRQASPHI
YSRPEDAGPLAVDDTDYSPAAEDLTVDSPEPERTRAKTVKPSGAFAHPGQ
RLGSSSGAGGGGQSLGSWLLPEPSPKAASKRSNDGRRRQRPLQSATDNSE
DFPRGTRTWGAFAQGQDRSRAGGNSLSTWLEPLPSMATSRKDRRTEPKSG
EMSEGAAAEGYESSGGQADDEYAYDDDDETSNDGVDGNAKWMSDRLEGLD
PSGAARAKDSWTDRERRNLTSTDVALGTKRKGRGRGGWRTKAGSKVFVAS
GRGGSVVASGQAAFKISKGGGGKKRKIG*
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mRNA from alignment at P-littoralis_Contig191:411813..414760-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.118.2 ID=mRNA_P-littoralis_Contig191.118.2|Name=mRNA_P-littoralis_Contig191.118.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2948bp|location=Sequence derived from alignment at P-littoralis_Contig191:411813..414760- (Pylaiella littoralis U1_48)
GGCAGCAGCTACGGCAGGTGCTTCCCTACCTCCCTCTCTCTCTCTCTCCG
ACACCCTGAGATCTTGAGCACATTGATAGGACAGAAGTGGAATGCTGAAC
ATTGTGCGAGGTGCCAGAGAAGTAGCACGAGCTCGAGAAAACCGCAAGCG
AAGCAGCAAAACCTCGGCGGTCGGACATTCAAACCCGAAGCAGAACAAGC
GTCTGTCTCGTGTGCCAGGCCAAGTTGGAGTCGCTGTCAGGAGAGATGAC
AGCAGCCGTCACCCTCTACCAGCGTTCGACAGCAGCCATGTTGAAAGAGG
TGAAAAACTTGGCGGTGCATTTTCGCAGGATGGTTTGCTTTGTAGGCGAA
GGAAGCCCTGCTCAATTTGAACCAAGCAGCGGAATTAGTCACCTTTCTTG
CAGTCAGCGCGGTTCCACCAGATCCCAAAACAAATTACTGCTGCTGTATT
GAACACACAGCAGTAATGCTGTTCGATACAGCAGTCCGCATGGATACGAT
ACTTGTATCTCGTCATGATCGTGTGTGTAAAGGTAAACGTTCATCCCCGC
CCTTGGCTACAGCATATTAATCTCCATCATGAGCATGTGTGTGTACGTTG
ACGTTCATCCCCTCCCTTGGCTCTAGCATATTCATCTCCATCGTGAGCTG
CGTGTATGGCGTCTAGCGCACAGAATGCACGACAGCAGTAGAGCTGGACG
TACAGGATGTTCTCACCGGCACGAGTACTATTTTGTACTGGGAAGGGGCG
AAACATGTCTTCTTCGAACGTCATCATACGACACCTGCAACATTGCAGCA
GAGTACTCTCGCTCCTTCAGCTGTTACAGTACGTCGTGTTGGAGGCACCA
CGTCACTCGCTTAGAGGCCAAAGTATGGCAGTAAAACCCCTAAGATCATC
GTTTCGCGCAGACTCCGCATGGCACTCAGAGTCAAAGTCGTACGATCATA
CGTCACTGCCAATGCTTCCCTCTCCCCTCGAACGAATGCCTGGCGCTCAG
ACCGACAAGACGACCAACACGAATATCACGCCTTCGGAGGAGGCACAACA
GGACAAAGCACCGCAAATTTACGACAGGCCAGTCCTCATATCTACTCACG
ACCTGAGGACGCGGGACCCTTGGCGGTGGATGACACGGACTATAGCCCAG
CAGCAGAAGACCTCACAGTGGATAGCCCTGAACCTGAGCGTACGAGAGCC
AAGACAGTGAAACCTTCCGGGGCTTTCGCCCACCCCGGCCAGCGCCTGGG
AAGCTCTTCAGGGGCTGGCGGTGGTGGACAATCGCTGGGTTCGTGGCTCC
TGCCGGAGCCTTCCCCGAAGGCCGCATCAAAGCGCAGCAACGACGGCAGA
CGAAGGCAGCGGCCGTTGCAAAGCGCCACAGATAATTCCGAAGACTTTCC
GCGCGGCACGAGAACGTGGGGAGCGTTTGCCCAGGGACAGGATAGAAGCA
GAGCCGGGGGTAATAGCTTGTCGACATGGCTCGAGCCGCTGCCGTCCATG
GCAACCAGCCGCAAAGATCGACGGACCGAGCCCAAGAGTGGCGAAATGTC
AGAAGGTGCTGCTGCTGAGGGGTATGAATCCAGCGGCGGGCAAGCTGATG
ATGAATATGCATACGACGATGACGATGAGACCAGCAACGATGGCGTCGAC
GGCAATGCAAAATGGATGTCGGACAGGCTGGAGGGGCTGGATCCAAGCGG
AGCAGCGAGGTATGCATGTGTATCTGCCGAACACGCCCCACCTCGCACAC
CCACGTACTCTCACCTGTACTCGGGTCTGACCTATACATTGCGTGCCAAG
GCAGGAGTCGTGAGTTTGTTTTCCGTAGCTCCTCGTGTCCCATGCTCGCT
TTTTGTTTCCTCGTGGTCTTCGTGCTTTTGCCGCGTGCATTACACCATTA
TTTACACCCACGGCGCGCTGTACCGTCGCACGTTCACATGCCAAAACCTT
AACCCCCGGCACTGGCGTTGGCATCGGCTTCCAACCGACGGTATCCTCTC
AGAGCAAAGGATAGCTGGACGGATAGAGAGAGGCGTAACCTGACGTCCAC
AGATGTCGCTCTAGGTACCAAACGGAAAGGGAGAGGCCGTGGTGGCTGGA
GGACCAAAGCTGGCAGCAAGGTTTTTGTGGCGTCTGGGCGGGGGGGGTCG
GTCGTGGCTAGTGGGCAGGCGGCGTTCAAGATATCCAAGGGTGGCGGTGG
AAAGAAGCGAAAGATTGGTTGACTGATATGTTGTACAAATAGTAGATGTT
GTTGGGCCGTGCGACTCTGCTGAAGTTTTTGTGCCGTCTTGTTCGCTGGT
ATCATACCACGCGGTTAGCCTTGTCTTCGGCTAGCTGGCGTTCGGCAGAG
GGCTTTTCTCGAGTTGGCAACGAACGGAGCTGTGCTTCGAGCTCGTTTTC
TACTTCAGAGAAAGGGAAATGTGCCATCTGTGCCACTGTTAGAACAGTTT
TTTCAATGAGAATTTGTCGAAAGAATCTACCAAATGTCGGGAATTGCGAC
AACCACATCTTCCTCCTAGGGGCTACGGAGGCGTAGGCCTCCTACGCGGA
TTGTGTGGAGCGTATTTGTATCCGTTGGTGCCACTGTTGTTTCCACGGCG
AATGGAATGAGGCTTTTGGTCTGGTGTAGCCCTTCTCACGTCACAGAGCA
TTTCACCTTCTCAGTGCTACTCTTCCTGCGCGGTAAAGGTGGAAAGGGCT
CTTTCAGGATTGGATGTACAACAGTATCAATACCTAGAGGAGGGAGAGGT
GCATCAACAATGTGATGCGGTGAAACTCGAGACGAAAAATGTCCCCGGGT
GCTCATTCCACACCGACAAACCGCGGTACATGCAAAATGTGCGCGACTTT
GCCTTTGAATGCGACATTTGTCACAGCAGTAAGTTTAATGACGACAATTT
TTGCTTGAGTGGATGGCGCGATTTGACCAAGTGCAATTTCGTCTTCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:411813..414760-

>mRNA_P-littoralis_Contig191.118.2 ID=mRNA_P-littoralis_Contig191.118.2|Name=mRNA_P-littoralis_Contig191.118.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1137bp|location=Sequence derived from alignment at P-littoralis_Contig191:411813..414760- (Pylaiella littoralis U1_48)
ATGCTGAACATTGTGCGAGGTGCCAGAGAAGTAGCACGAGCTCGAGAAAA
CCGCAAGCGAAGCAGCAAAACCTCGGCGGTCGGACATTCAAACCCGAAGC
AGAACAAGCGTCTGTCTCGTGTGCCAGGCCAAGTTGGAGTCGCTGTCAGG
AGAGATGACAGCAGCCGTCACCCTCTACCAGCGTTCGACAGCAGCCATGT
TGAAAGAGACCGACAAGACGACCAACACGAATATCACGCCTTCGGAGGAG
GCACAACAGGACAAAGCACCGCAAATTTACGACAGGCCAGTCCTCATATC
TACTCACGACCTGAGGACGCGGGACCCTTGGCGGTGGATGACACGGACTA
TAGCCCAGCAGCAGAAGACCTCACAGTGGATAGCCCTGAACCTGAGCGTA
CGAGAGCCAAGACAGTGAAACCTTCCGGGGCTTTCGCCCACCCCGGCCAG
CGCCTGGGAAGCTCTTCAGGGGCTGGCGGTGGTGGACAATCGCTGGGTTC
GTGGCTCCTGCCGGAGCCTTCCCCGAAGGCCGCATCAAAGCGCAGCAACG
ACGGCAGACGAAGGCAGCGGCCGTTGCAAAGCGCCACAGATAATTCCGAA
GACTTTCCGCGCGGCACGAGAACGTGGGGAGCGTTTGCCCAGGGACAGGA
TAGAAGCAGAGCCGGGGGTAATAGCTTGTCGACATGGCTCGAGCCGCTGC
CGTCCATGGCAACCAGCCGCAAAGATCGACGGACCGAGCCCAAGAGTGGC
GAAATGTCAGAAGGTGCTGCTGCTGAGGGGTATGAATCCAGCGGCGGGCA
AGCTGATGATGAATATGCATACGACGATGACGATGAGACCAGCAACGATG
GCGTCGACGGCAATGCAAAATGGATGTCGGACAGGCTGGAGGGGCTGGAT
CCAAGCGGAGCAGCGAGAGCAAAGGATAGCTGGACGGATAGAGAGAGGCG
TAACCTGACGTCCACAGATGTCGCTCTAGGTACCAAACGGAAAGGGAGAG
GCCGTGGTGGCTGGAGGACCAAAGCTGGCAGCAAGGTTTTTGTGGCGTCT
GGGCGGGGGGGGTCGGTCGTGGCTAGTGGGCAGGCGGCGTTCAAGATATC
CAAGGGTGGCGGTGGAAAGAAGCGAAAGATTGGTTGA
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