mRNA_P-littoralis_Contig191.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.107.1
Unique NamemRNA_P-littoralis_Contig191.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig191.107.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.180e-12
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 2 
Query:  197 RLAHEALPTPTTAAKDDPCCLSWDLHEAAATQGGAEAVR 313
            RL+ + LPTPTT +KDDPCCLSWDLHEAAAT+GG EAVR
Sbjct:   65 RLSQDDLPTPTTTSKDDPCCLSWDLHEAAATRGGGEAVR 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z2_ECTSI2.180e-1279.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:375516..375828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G7Z2
PFAMsAnk_2,Ank_3
Model size314
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.87e-14
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size204
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789921.8083684-UTR-P-littoralis_Contig191:375515..3756241680789921.8083684-UTR-P-littoralis_Contig191:375515..375624Pylaiella littoralis U1_48UTRP-littoralis_Contig191 375516..375624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789921.8217103-CDS-P-littoralis_Contig191:375624..3758281680789921.8217103-CDS-P-littoralis_Contig191:375624..375828Pylaiella littoralis U1_48CDSP-littoralis_Contig191 375625..375828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.107.1prot_P-littoralis_Contig191.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 375625..375828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.107.1

>prot_P-littoralis_Contig191.107.1 ID=prot_P-littoralis_Contig191.107.1|Name=mRNA_P-littoralis_Contig191.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
MQEENESRRRRGRRRKASSGTFVVERSPLRLAHEALPTPTTAAKDDPCCL
SWDLHEAAATQGGAEAVR
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mRNA from alignment at P-littoralis_Contig191:375516..375828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.107.1 ID=mRNA_P-littoralis_Contig191.107.1|Name=mRNA_P-littoralis_Contig191.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=313bp|location=Sequence derived from alignment at P-littoralis_Contig191:375516..375828+ (Pylaiella littoralis U1_48)
CACCGTCCGAACCGTCCGAACAGCAAACGTAATAACGGCTGGGGTAACAG
AAATCAAGGAGAAGAAGCAGTAGCACCGGTAAGCTAGATGACACACACGC
TTTGATTTTATGCAGGAAGAAAATGAGTCCAGGAGGAGGAGGGGAAGGCG
ACGAAAAGCTTCAAGCGGGACGTTCGTCGTCGAGCGTTCTCCCCTCAGAC
TGGCACACGAAGCGCTACCGACACCAACCACGGCCGCCAAAGACGATCCC
TGCTGTCTCTCTTGGGACCTGCACGAAGCCGCTGCAACACAGGGGGGCGC
TGAAGCAGTCCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:375516..375828+

>mRNA_P-littoralis_Contig191.107.1 ID=mRNA_P-littoralis_Contig191.107.1|Name=mRNA_P-littoralis_Contig191.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig191:375516..375828+ (Pylaiella littoralis U1_48)
ATGCAGGAAGAAAATGAGTCCAGGAGGAGGAGGGGAAGGCGACGAAAAGC
TTCAAGCGGGACGTTCGTCGTCGAGCGTTCTCCCCTCAGACTGGCACACG
AAGCGCTACCGACACCAACCACGGCCGCCAAAGACGATCCCTGCTGTCTC
TCTTGGGACCTGCACGAAGCCGCTGCAACACAGGGGGGCGCTGAAGCAGT
CCGA
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