mRNA_P-littoralis_Contig191.102.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.102.1
Unique NamemRNA_P-littoralis_Contig191.102.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig191.102.1 vs. uniprot
Match: A0A6H5L4I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.580e-20
Identity = 125/243 (51.44%), Postives = 139/243 (57.20%), Query Frame = 1 
Query:  250 MVPGAGV-RNGKRKAEHQRHDSASKKAMEGYFRQAYATMNGQDASHGFSSTRADINSGEEATDDESEFSSLDGRISPSR-PVAWGA---PAAAAGVARGGGTASSNAASHFHALGQHGYAMAPPGGLNFPAGMVHHQQVGTA-SQNAASWSATSG-------NPNAGYQQHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRMMQGGGTRAEGDEWGWFVDAGEQEQQP-HPGPAGVRRSSR 936
            MVPGAGV R+GKRKAEH+R+ SASKK ME Y+   +A   G  A  G SS     NSGEEATDDESEFSS+DGR SP++ P  WGA   P    GV R    A   AA                              +G+A + N   WSA  G                 XXXXXXXXXXXXXXXXXXXXXXXXXX   R+  +GGG R EGDEWGWFVDAGEQEQQ  HPG  GVRRS+R
Sbjct:    1 MVPGAGVVRHGKRKAEHERNASASKKVMEAYY--GHAGHAGVVAGGGRSS--GGDNSGEEATDDESEFSSVDGRTSPAQQPGTWGAAPRPQPGMGV-RFSPEAHGPAAXXXXXX----XXXXXXXXXXXXXXXXXXXTLGSAGASNCNGWSAYGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARKASRGGG-RPEGDEWGWFVDAGEQEQQQAHPGQWGVRRSAR 233
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BLAST of mRNA_P-littoralis_Contig191.102.1 vs. uniprot
Match: D7G7Z4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 5.890e-15
Identity = 73/138 (52.90%), Postives = 82/138 (59.42%), Query Frame = 1 
Query:  250 MVPGAGV-RNGKRKAEHQRHDSASKKAMEGYFRQAYATMNGQDASHGFSSTRADINSGEEATDDESEFSSLDGRISPSR-PVAWG-APAAAAGVARGGGTASSNAASHFHALGQHGYAMAPPGGLNFPAGMVHHQQVG 654
            MVPGAGV R+GKRKAEH+R+ SASKKAME Y+   +A   G  A  G SS     NSGEEATDDESEFSS+DGR SPS+ P AWG AP    G+    G   S  A  F A      A A  G  N PA     QQ+G
Sbjct:    1 MVPGAGVSRHGKRKAEHERNASASKKAMEAYY--GHAGHAGVAAGGGRSS--GGDNSGEEATDDESEFSSVDGRTSPSQQPGAWGVAPPPQPGM----GVHFSPEAHDFAA------AAAAAGFNNVPAAHALQQQMG 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4I8_9PHAE8.580e-2051.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7Z4_ECTSI5.890e-1552.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:358372..361028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2101
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_009550.1
Cds size693
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789921.6060448-UTR-P-littoralis_Contig191:358371..3584551680789921.6060448-UTR-P-littoralis_Contig191:358371..358455Pylaiella littoralis U1_48UTRP-littoralis_Contig191 358372..358455 +
1680789921.6152208-UTR-P-littoralis_Contig191:359011..3591761680789921.6152208-UTR-P-littoralis_Contig191:359011..359176Pylaiella littoralis U1_48UTRP-littoralis_Contig191 359012..359176 +
1680789921.6362493-UTR-P-littoralis_Contig191:359869..3610281680789921.6362493-UTR-P-littoralis_Contig191:359869..361028Pylaiella littoralis U1_48UTRP-littoralis_Contig191 359870..361028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789921.6273918-CDS-P-littoralis_Contig191:359176..3598691680789921.6273918-CDS-P-littoralis_Contig191:359176..359869Pylaiella littoralis U1_48CDSP-littoralis_Contig191 359177..359869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.102.1prot_P-littoralis_Contig191.102.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 359177..359869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.102.1

>prot_P-littoralis_Contig191.102.1 ID=prot_P-littoralis_Contig191.102.1|Name=mRNA_P-littoralis_Contig191.102.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=231bp
MVPGAGVRNGKRKAEHQRHDSASKKAMEGYFRQAYATMNGQDASHGFSST
RADINSGEEATDDESEFSSLDGRISPSRPVAWGAPAAAAGVARGGGTASS
NAASHFHALGQHGYAMAPPGGLNFPAGMVHHQQVGTASQNAASWSATSGN
PNAGYQQHQQQQLQQQQQEQLLYQQQHQHQLQQQQVSGRRMMQGGGTRAE
GDEWGWFVDAGEQEQQPHPGPAGVRRSSRG*
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mRNA from alignment at P-littoralis_Contig191:358372..361028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.102.1 ID=mRNA_P-littoralis_Contig191.102.1|Name=mRNA_P-littoralis_Contig191.102.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2657bp|location=Sequence derived from alignment at P-littoralis_Contig191:358372..361028+ (Pylaiella littoralis U1_48)
CAGAGCGAATCACACAGGAGCTATACAGCCTTCGCTAGTCCCCGTAGACG
AGCGTCTACCTCGAGCTCTGCTCCCGTGAGAAAGGTGTGTGTGCTGTGTA
TGTGCGTCGTTGCAGGGAGACGAAGACAGCGAAGTCCGCTCGTCTGAATC
TGTTCCTTTTTCTCAAAAAGTAAGGTATTTTCCAACTGGCGGAAAAAATG
AGACCTGGCGCGGGTCTGCGTTCTTCTCTCTTGAATGGACATACTTTTCC
AATCCATCGTCCTCTCTCCGTTCTCAAATCTCTGCTAGGAGTAGACACTA
TCCTGGGTAGCCAAGGCTTCTACCGGCTTGCCTCCGAGAAATTTCGAGCG
CCAGATCATGCCGTAAATCGTCCGCCACACAGCATGGTATCACTCTCTCA
CACACAACCCTGTTCCGACTGAGACTGCCAAGATTTATTTCGTGAAAGTG
TTCGGGCGTGTTCTATGTTCACTGCTTGGCACGATAACTACCAGGCCCAC
CTGAACCAGCACGTGAAACACCTACAAGAGAGCAGGTTCGACACTGGTAG
GTTGCCAAGACTGAGTCAGCTTGTCTTCATCCTTTTGCTGCTCCCTCCTT
CTATCGTTTTGCTCGTGCTTTGTTGTGCCCGGCGACACAGCTCCGTCCAT
TTTTTTCCGAGAGCATAGGTAGACAGCATCTACAGCAAAGGAAGAAAGAC
GAAGATAGAGCAAGTTGCCGGACTGTTCGCTCCCTTTTACTCCAGAGTAC
TAGGTATCTAACAACCACCGTCAATCGTCTGCCAAACCATCTACTTCGAA
GTAGTATGGTGCCCGGGGCTGGCGTGCGCAATGGAAAGCGCAAGGCGGAG
CACCAACGTCACGACAGTGCCTCAAAGAAGGCGATGGAGGGATACTTCCG
CCAAGCGTACGCCACCATGAACGGGCAGGACGCATCTCACGGTTTCAGCA
GCACGCGCGCCGACATCAACAGTGGGGAAGAAGCAACCGACGACGAGAGC
GAATTTTCGTCGCTAGACGGTCGGATATCGCCGTCTCGGCCGGTTGCGTG
GGGGGCACCTGCAGCAGCGGCAGGCGTCGCGAGAGGAGGAGGGACGGCGT
CTTCGAACGCGGCTAGCCACTTCCACGCACTAGGACAGCACGGGTACGCT
ATGGCACCACCGGGTGGTTTAAATTTTCCTGCCGGAATGGTACATCATCA
ACAGGTGGGCACTGCTTCCCAAAACGCGGCTAGCTGGTCGGCCACCAGCG
GCAACCCCAATGCCGGATACCAACAACATCAGCAGCAGCAGCTGCAGCAG
CAACAACAAGAACAACTGCTGTACCAACAACAACATCAGCACCAGTTGCA
GCAGCAACAGGTGAGCGGGAGGAGAATGATGCAGGGTGGAGGAACACGCG
CAGAAGGAGATGAATGGGGATGGTTTGTTGACGCTGGAGAGCAGGAGCAG
CAACCACATCCCGGGCCCGCGGGGGTACGCCGATCATCCAGGGGCTGACA
CAAGTAGACCTGGGGACCGGCTACATTTACACAACATCAGGTTCCTGTCC
AACCAGAGGTGCCTATGTTTTTTTTTGCTTAAAATCTTGTGGAGCACGCG
AATTGCTGTGTTCCTTCGTTGTGTGTCATGTCGCAGGGCGTCGTATTGTA
CAGAATTTCCCGTTTGGCCCGTCCTACATACCTCTTTCTTCCAGATCCGC
TCTTGTGCTGATCGATTTGTTCTGTTCTGGTCCCCGGTAACGTATTTCTG
CTGTTCTTTGTTTTCAAGTGTTTTTTCCGATACCCGAACCTTGAAAGCGT
TGATCGAGGATGTGTCGCGGTGAGTCATTTATTTCAGGTCTCCCCGTGAA
GCACTTGAGATGCGAACGGCGTTACCGGGGCGTGGGGAGCGTTTTGATTG
TACGTCAAGACACAAACACCAGCTCCGTTCTAGAAAAGCGGTTGGCTTAA
GGTGCAGATCGTACCTGCGAGACCGGATGGTCTCTAAGGTCTACGATACC
TGCACGTGGCGAGCTCAACGTGCGCTGTTTGGCATCCAAGATTACCGGTA
GTGCAAGAATCCGCGCGCGCAAGTCTGGCATTTTTGTAGTCCAGTTTTCT
GGGTTGGCCGCCGCCTGTAATGCGATGTTGTCCGTACTTGTGTACGCGCC
CTACTATACGCCTGTAGTTTTTTTCTATTCAGGAGATAGATAATACTTCG
AGTTTATGATACAGAGAACGAGTAGGACTCCGTGCTTCGACTGCTGTGGT
TCTGTTGTGTGGGGTTCCTACATACATATGTACAAGTATCGAGGGTGTAT
ATACCCAATGGACCAGCCGACAGAACTTCTCTGCCGCCGTCTACACTTTC
ATCAGCGATCAGCAATGTATCGCATAACAGCAGAGGCGCAGGGATCACAA
ATTGCGTCCCTCGAGAAACTAGTGCGGCAGTGATACGCAATATATAACGT
GATGCGGTTGATTTTCGGTTCACACACGGCGGTATGATTCTTGTATAATG
ATATGATTTGCATATTACATGAATGGTTTATTTTCTTGTTTTTTACTACA
AAAGAGAGTTTTTTTTAGTTGCCTTTTTTGAAGATTTGTCCACTAGACGG
TATCAAAATGTACTGAACCTCCACCCGTCGTACATACGAAAAACGATTGC
TTCGTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:358372..361028+

>mRNA_P-littoralis_Contig191.102.1 ID=mRNA_P-littoralis_Contig191.102.1|Name=mRNA_P-littoralis_Contig191.102.1|organism=Pylaiella littoralis U1_48|type=CDS|length=693bp|location=Sequence derived from alignment at P-littoralis_Contig191:358372..361028+ (Pylaiella littoralis U1_48)
ATGGTGCCCGGGGCTGGCGTGCGCAATGGAAAGCGCAAGGCGGAGCACCA
ACGTCACGACAGTGCCTCAAAGAAGGCGATGGAGGGATACTTCCGCCAAG
CGTACGCCACCATGAACGGGCAGGACGCATCTCACGGTTTCAGCAGCACG
CGCGCCGACATCAACAGTGGGGAAGAAGCAACCGACGACGAGAGCGAATT
TTCGTCGCTAGACGGTCGGATATCGCCGTCTCGGCCGGTTGCGTGGGGGG
CACCTGCAGCAGCGGCAGGCGTCGCGAGAGGAGGAGGGACGGCGTCTTCG
AACGCGGCTAGCCACTTCCACGCACTAGGACAGCACGGGTACGCTATGGC
ACCACCGGGTGGTTTAAATTTTCCTGCCGGAATGGTACATCATCAACAGG
TGGGCACTGCTTCCCAAAACGCGGCTAGCTGGTCGGCCACCAGCGGCAAC
CCCAATGCCGGATACCAACAACATCAGCAGCAGCAGCTGCAGCAGCAACA
ACAAGAACAACTGCTGTACCAACAACAACATCAGCACCAGTTGCAGCAGC
AACAGGTGAGCGGGAGGAGAATGATGCAGGGTGGAGGAACACGCGCAGAA
GGAGATGAATGGGGATGGTTTGTTGACGCTGGAGAGCAGGAGCAGCAACC
ACATCCCGGGCCCGCGGGGGTACGCCGATCATCCAGGGGCTGA
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