mRNA_P-littoralis_Contig191.101.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.101.1
Unique NamemRNA_P-littoralis_Contig191.101.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig191.101.1 vs. uniprot
Match: D7G7Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z5_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.150e-21
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:  264 QDVTEYQASLAARVQQINITISGLHPRSAALRDPRERKELDLQLKGLARQGMFITEVSRELDAIISERGRAW 479
            +   + QA LAARVQ+IN TI  L+PR+AA++DP  R+E++L+LKGLAR G+F+TE  RELDAI++ERGRAW
Sbjct:   35 EQAQQQQAHLAARVQRINATIEELYPRTAAVKDPEARREVELRLKGLARHGLFVTETWRELDAILAERGRAW 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z5_ECTSI3.150e-2161.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:354815..357723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size714
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_009560.1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789921.534462-UTR-P-littoralis_Contig191:354814..3550461680789921.534462-UTR-P-littoralis_Contig191:354814..355046Pylaiella littoralis U1_48UTRP-littoralis_Contig191 354815..355046 -
1680789921.5716517-UTR-P-littoralis_Contig191:357637..3577231680789921.5716517-UTR-P-littoralis_Contig191:357637..357723Pylaiella littoralis U1_48UTRP-littoralis_Contig191 357638..357723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789921.5466428-CDS-P-littoralis_Contig191:355046..3552001680789921.5466428-CDS-P-littoralis_Contig191:355046..355200Pylaiella littoralis U1_48CDSP-littoralis_Contig191 355047..355200 -
1680789921.5557654-CDS-P-littoralis_Contig191:357395..3576371680789921.5557654-CDS-P-littoralis_Contig191:357395..357637Pylaiella littoralis U1_48CDSP-littoralis_Contig191 357396..357637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.101.1prot_P-littoralis_Contig191.101.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 355047..357637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.101.1

>prot_P-littoralis_Contig191.101.1 ID=prot_P-littoralis_Contig191.101.1|Name=mRNA_P-littoralis_Contig191.101.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MSLTNVATAAGRVNATARGGVLGVLRQHQHQQQEPQQSHQHQSGQQQQQI
QPQQQQQHFQDVTEYQASLAARVQQINITISGLHPRSAALRDPRERKELD
LQLKGLARQGMFITEVSRELDAIISERGRAW*
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mRNA from alignment at P-littoralis_Contig191:354815..357723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.101.1 ID=mRNA_P-littoralis_Contig191.101.1|Name=mRNA_P-littoralis_Contig191.101.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2909bp|location=Sequence derived from alignment at P-littoralis_Contig191:354815..357723- (Pylaiella littoralis U1_48)
CTCGAAACAAGCCCACCGTCCCGACATTCTGCTCTCTTGTTCAGCTCCGG
AGCTACACTCAACACTCCTCAGCCGATCCCCGAAATATGAGCCTAACTAA
CGTGGCGACTGCTGCTGGGAGAGTAAATGCCACGGCTCGAGGCGGAGTAT
TGGGGGTCCTCCGCCAGCACCAGCACCAGCAGCAGGAACCTCAGCAGTCA
CACCAGCATCAATCAGGGCAGCAGCAACAGCAGATACAGCCACAGCAGCA
GCAGCAGCACTTCCAGGATGTCACTGAGTACCAGGCTTCCCTTGCCGCCA
GGGTTCAGCAGATCAACATCACGATTAGGTGAGACTGTACATCCGTTTTG
TCAAGGTTGCGAGAGCACACAGCAGTCTGCACGGCTGCACACCGGATGGA
AAACTTACTTGATGTTGAAGCGACGCAAGCGTCCTTCCTTCGAGCTTCGA
ACTGGGTATTTTGTATTTTGTGTAGTCAGAATCCAAAGGACCCCGACCCC
CTTCGCCTGCTCCCACGAAATTTTAAATGGTCTTCAAGGAGGTTGACGTC
CGGACGAGATTATTTTGAGATGTATTGCACACCGGCAGATGGTATCGGAG
CTCCCTAGTTCCAATCTTCAATTTGTCAATCTTCAGACACGAAACATGCA
CGTATCCTTGTCGCTTGCTGCAGTTGAACCGCCTCCAAGAGACCGAGAGA
ACCATATTCCATGACCCTTTGTCTCCTTCACCACCGGGGACACCAGCACG
TCGATGTTGATCACGGTATTATTTATACTCCTACGGCAGTTGACATTTTG
AGGGAGTCTCATATTCATCACTGCTGTACTATATAGGCTCCGAGGAGCAC
GGCATGATTGCTGTCTGGGACGCGAACAACCGTTGATACAGCAGAACAGC
ATCCTCAGATAACACATATGGTACAATACCAATTACATTGAAGCACACAG
CAGGTCGAATCATGGACAGAAAAAAAGTTGTTGTTGATTATCACATCCGG
TCATCGCCAAAATCTAGGGAGTGGTCTCAACAGTGCTGAGCGCTAGGAAG
ATAAAAAAAACAGAAAGAAACTACTTCGAAGTACAAGGGAATACCCAAGA
AAGACCGAGGAAGATACACCTTCCTAGGCGGTGTGCATCACTGAACTACT
TGTACAGCAGTACCAACAGCAAACGTACGTACTTCCAGCGTCGTTTATTT
GAACTGCCGTAAGTATCACATAACACATCTAACATCTAACCCTCTGAGCC
TTAAGGGTTCCCTGACAACCGATCGTCGAGAGGCACGGATTTTGAAAAAC
AGTGAACGGGTCCTGACACTACTGTATTCGACGCCACATACCCTAACCTC
CAAAACTACGGGTCAACAGCAGTAGCTCATCCCAATAGCTACCTCGGACG
AGCCGCAGTTCAGAAGATTGATGCCGATGGCGGCGAGTACAGCTGCGTCA
AACGTGTAGCGTCAGTCCGGATTGCGGAGTTTTTCAGGGATCCTGCGGAG
TTCTTGTGCCAATGCTGCGAACTTCGATAACTATGCGCCAGTAGAAGATC
TGAATGCGCCGACGCAGATGAAGCTACCGCATGACCTCTTCTCCTGATGT
AATCCTTGTTATCGGGTACGTACAGACGACAGCCCATCTTGAAGCCTTAT
CAAAATAAGCTCTTTTGACTTGATTAAAGACTGAAAATGTTCTTTCATAT
AAAAAAATTGGTTTTTCAGTGAGGAATTTTTTACCGCCCTTGTCAGGCAA
CCCTTAACGCGGGTGGGGTTGAGCATCAAAATTGAGCACCTGATTTTTTT
TGTTTTGCGAGTCCGGTCTTCTCGATGCGGAAGAGGCACACCACAACATC
AGCACATCAGCACCTCTCTCCTTCACGTCGCAACAAAAAGAAGACACAAG
GGGCACCATCATAAACATATGTCCCGACATGATAGACAATCCACATTACA
TAACACAGAGAGATACCCGGTACAAGCATCGTCGTGCTGTACAACAGTAT
GCAGCAGCAGCATGTTTGGAGTGCGTGACACAATAACAAAATAGACTGCA
ACAACAGAGGACAGCCGATGGTATATATGACAGATACTCTCCATATCATA
CATCAGCAGAAGCAGCAAAGAGTGTAATGGCAATCACGTGCCGGTGGGAT
AATGCACGAACATCCCAACGCAACACAGCTGTACACAGCAGATACTGGTA
TGCCGGCGAGAACTTCCAACCTCGCCGGTGCATGTATGTGGGATGTTGGA
ACAGCCACCAGCAGAGAGAGCAGCGAACCAGTGGTACACTAGAGAGGAGA
AAGGCGTGCGCCTCGAGGGGCTTAAAGATGTACGCCTCGAGCTTTTTGTA
CAGGATTACTTTTACTACTGTTGTGGTATGAAAACAATATTACTCGAGTA
TAGTTTTCACATGGCTTCGGCTTGTATGTCACCAACCTGATATCCTGGTA
TCCTCCCGTCCCTCGCCCGTGTCCTTTTTTTTTTTTTTTTAACATGAACG
TGCCCGCTTTGTTAATTTTTCAGCGGGCTGCATCCCAGGTCAGCCGCACT
CAGAGACCCTCGGGAGAGGAAAGAGTTGGACCTGCAGCTGAAAGGCTTGG
CACGCCAGGGGATGTTCATCACTGAGGTCTCAAGAGAACTCGACGCAATT
ATCTCGGAGCGCGGGAGAGCATGGTAAACATCACGATATTTTCCCAGGTC
TGGAGGCGGACCTGTGGTCGAATCGCTGAAGTCCCATTGTGTAAGCCCTC
ACCAGTACCTCGAGCATACGCTTGTTGCACAAGAGGTGGCGTTAAGTCGG
TTGCTAATTTCGCTCGCTTCTGTTGAAATATTTGTATACCAATTAGTATT
TTGTAACGTTCCTCCCTTGAGTTTTTCCTGTGAAGGGCGTGCGCGCAAGG
GGGGGGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:354815..357723-

>mRNA_P-littoralis_Contig191.101.1 ID=mRNA_P-littoralis_Contig191.101.1|Name=mRNA_P-littoralis_Contig191.101.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig191:354815..357723- (Pylaiella littoralis U1_48)
ATGAGCCTAACTAACGTGGCGACTGCTGCTGGGAGAGTAAATGCCACGGC
TCGAGGCGGAGTATTGGGGGTCCTCCGCCAGCACCAGCACCAGCAGCAGG
AACCTCAGCAGTCACACCAGCATCAATCAGGGCAGCAGCAACAGCAGATA
CAGCCACAGCAGCAGCAGCAGCACTTCCAGGATGTCACTGAGTACCAGGC
TTCCCTTGCCGCCAGGGTTCAGCAGATCAACATCACGATTAGCGGGCTGC
ATCCCAGGTCAGCCGCACTCAGAGACCCTCGGGAGAGGAAAGAGTTGGAC
CTGCAGCTGAAAGGCTTGGCACGCCAGGGGATGTTCATCACTGAGGTCTC
AAGAGAACTCGACGCAATTATCTCGGAGCGCGGGAGAGCATGGTAA
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