mRNA_P-littoralis_Contig191.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.79.1
Unique NamemRNA_P-littoralis_Contig191.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig191.79.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.300e-17
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQG 288
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG
Sbjct:   84 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQG 180
[Close]
BLAST of mRNA_P-littoralis_Contig191.79.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.780e-17
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQG 288
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG
Sbjct:  412 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQG 508
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE6.300e-1748.45Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE6.780e-1748.45Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:260564..261223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789920.3916876-CDS-P-littoralis_Contig191:260563..2606761680789920.3916876-CDS-P-littoralis_Contig191:260563..260676Pylaiella littoralis U1_48CDSP-littoralis_Contig191 260564..260676 +
1680789920.400914-CDS-P-littoralis_Contig191:261036..2612231680789920.400914-CDS-P-littoralis_Contig191:261036..261223Pylaiella littoralis U1_48CDSP-littoralis_Contig191 261037..261223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.79.1prot_P-littoralis_Contig191.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 260564..261223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.79.1

>prot_P-littoralis_Contig191.79.1 ID=prot_P-littoralis_Contig191.79.1|Name=mRNA_P-littoralis_Contig191.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVL
RLYRALVEYFNRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHG
back to top

mRNA from alignment at P-littoralis_Contig191:260564..261223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.79.1 ID=mRNA_P-littoralis_Contig191.79.1|Name=mRNA_P-littoralis_Contig191.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig191:260564..261223+ (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGAGAGGTGTGCGCGAATGATGTGCGCAGGTTGTAT
TCGGGATTTATTTTGTGTGTTCGTGTCGTCTCGGACAACAGAAAGGTCGA
GGCAGGCGCCGCCGCCCGCCAAGTATGCAGCAACTTGCTTTCGCTTATGG
ATTATTACAAAATCGCCGTGAGTTGCCACGCCCTAAAGAAAAAATTAAAA
AAATTGTAAAATGTCGTTCCTGTGGTGAACGAAGTTGGGAGCAAACGTTC
CGGGTCACTCGTTTAGACACGCAAACTGACGTGCCCCTTCCGCCCCCCTC
CCCGAAGCAAGCACTAACTCGTTTGCAAACGAAATTGCCTCCCATCACCC
GCCACGTTTTGAACAGTTCATAGGTGGGCTTCGCTGCATGCAATGCTCCA
GCGCGTGCTCAGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTG
GGAGCGACCGTGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGTG
GTGAGCGTCCTCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGGG
TCGTCATGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig191:260564..261223+

>mRNA_P-littoralis_Contig191.79.1 ID=mRNA_P-littoralis_Contig191.79.1|Name=mRNA_P-littoralis_Contig191.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig191:260564..261223+ (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGGGCTTCGCTGCATGCAATGCTCCAGCGCGTGCTC
AGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTGGGAGCGACCG
TGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGTGGTGAGCGTCC
TCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGGGTCGTCATGGG
back to top