mRNA_P-littoralis_Contig191.76.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.76.1
Unique NamemRNA_P-littoralis_Contig191.76.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:259784..260380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789920.3356643-UTR-P-littoralis_Contig191:259783..2597871680789920.3356643-UTR-P-littoralis_Contig191:259783..259787Pylaiella littoralis U1_48UTRP-littoralis_Contig191 259784..259787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789920.3463035-CDS-P-littoralis_Contig191:259787..2598651680789920.3463035-CDS-P-littoralis_Contig191:259787..259865Pylaiella littoralis U1_48CDSP-littoralis_Contig191 259788..259865 +
1680789920.3564005-CDS-P-littoralis_Contig191:260302..2603801680789920.3564005-CDS-P-littoralis_Contig191:260302..260380Pylaiella littoralis U1_48CDSP-littoralis_Contig191 260303..260380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.76.1prot_P-littoralis_Contig191.76.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 259788..260380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.76.1

>prot_P-littoralis_Contig191.76.1 ID=prot_P-littoralis_Contig191.76.1|Name=mRNA_P-littoralis_Contig191.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MERVAFCTKEFPGRHTAEKIEPWLRQVTVDAFGGIVGAEHCEPSNIYISA
TV
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mRNA from alignment at P-littoralis_Contig191:259784..260380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.76.1 ID=mRNA_P-littoralis_Contig191.76.1|Name=mRNA_P-littoralis_Contig191.76.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig191:259784..260380+ (Pylaiella littoralis U1_48)
TGGTATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATA
CTGCAGAGAAGATCGAGCCATGGCTTCGACAGGTGACACTCCATGTTATT
TTTTAGGGCTGTGGTGTAATTCTTTGATTTTTTGTTGTTGTTTTCAATAC
GTTGTTTTTGGTGTATGTATCCACCACGCTGTGTGTCCTTGCCTCTACCT
TCCAAAAACAAAACACGCATTTGGTAAGCTACAAACAAGTCAGGTGTTCG
GCTCAACAACATCGTGTTCGGGTTCGTTTTTGCAAGTTTATTGGTGGCGC
ACACATAATGTTGCTCTCTGGGTAGGTTTCATGTGGTGGTGAGTCCGAAC
AACAATGGAGGGAGCGGATAGAGCGCTGCTGTGTCGGCGTGCATGTATTC
GATTTGATGTGTGCGTGTTAGTATTTCGTATTTCTCTTTTGGCCGTGTCT
GTCGCGAGTGTTGAAAGAAAAACAACTGCACTCCCACATTCTTCACCTCT
GCTCGCCGTGCGTGAACAGGTTACCGTTGACGCTTTTGGCGGTATCGTAG
GAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCCACGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:259784..260380+

>mRNA_P-littoralis_Contig191.76.1 ID=mRNA_P-littoralis_Contig191.76.1|Name=mRNA_P-littoralis_Contig191.76.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig191:259784..260380+ (Pylaiella littoralis U1_48)
ATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATACTGC
AGAGAAGATCGAGCCATGGCTTCGACAGGTTACCGTTGACGCTTTTGGCG
GTATCGTAGGAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCC
ACGGTC
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