mRNA_P-littoralis_Contig191.73.11 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.73.11
Unique NamemRNA_P-littoralis_Contig191.73.11
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: A0A6H5KP90_9PHAE (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP90_9PHAE)

HSP 1 Score: 1063 bits (2748), Expect = 0.000e+0
Identity = 714/1120 (63.75%), Postives = 793/1120 (70.80%), Query Frame = 1
Query:  208 MGTRATESTVGITHFMTESDTGFSGVLKQRYSDFVVHEVDPDGNVCKGTDFPGLLRPIEHDRQ----------SASSH------SSVEPQPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE------LKTLIKSGAQSLIPVVGEEVTAKVEAFVLEGISIRGRDQRTLTLPTTDKTIRTKVYGLLKQNLSKYLLAVTVDDPASIPIPXXXXXXXXXXXXXXKIDTAVTK-ASDGDGTPPEGA------AAAEATESTVGNGXXXXXXXXXXXXDDAKKHPSEGKPVEKQNGDAAPGQAAEAAAVKKPDPNGPKCVQLKMKPDWRRAGGGRKXXXGDLDHXXXXXXXXXXGR-WAWPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFNRPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPKDSAAVLDDNDEPVVELA-NAASEASADVEGEDADAGGEGE-PQGKRAKTGGAPLPPVHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYTKALEERGLTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDLLDIDDARIAKENAEKKXXXXXXXXXXXXXXXXXXXXXXXAPA-------ETNKTDLGQQEQPPSVKEGEAGDGKPAS-DAMDVVDATAEVK----PSAESKGRFHALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLNTLAPGQHPAKGAASVEGGATAXXXXXXXXXXXXXXXDKGDANASTPKGAVIKIGSSFK 3435
            MG RA ESTVGITHF+TE+DTGFSGVLKQRYSDF+VHEV  DG VCKGTDFPGLLRPIEH+RQ          +A++H      S+  P  A                          XXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXX       LK   KSGA++L+PVVGE+V AKVEAF+LEG+ + G+D+RTLTLPT DK  R KVYGLLKQNLSKYLLAVTVDDPAS P P              K +T   K A DGD     GA      A  EA  +  GNG                      +P EK   +     A   AA KKPDPNGPKCVQLKMKPDWR   GG K   GDLD   XXXXXXXX R W WPEGRPEFCRF+LYKEN+DTMGAVSR+CKHLRFSSKVVGYAGTKDKRGVT+QWCTVKRKSIEELR+FNRPLGAFQGSIVLLGNFSYV EPLKLG+LSGNRFGIVLRNL+LP                     ENGA        GG   + +E +K  ++ A                                 AVVE GAKL+ETV+RRC WVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPR+GENEATH SKVH+LK+PTDI+GTL+KLPFFMDAEKSMMQALL+GGPNAH+DALKAVPKNLQLMYLHAFQSL+WNLAASERIKLYGR+  VEGDLVFP+DS A   ++D  +V+ A  AA+  +A+ +G+  D GGEG+ P+ KRAKT    LPPVH VTKEDVE+GTF++TDVVLPMPGSGVTYP+NGV ECYTKALEERG+TEACF++STQK+F LGGAYRRLLQVPKDMQWE+KRYDDHTLHLINTDIDDLLDIDDARIAKE+AE+KXXXXXXXXXXXX     XXXXXX          +    +   ++QPPS K+ E GD K  + DAMDV  A  E K    P     GRFH LCLHFTLPS++YATMCLRE+TQQDTST +HTSLN+LA GQHPAK  +S       XXXXXXXXXXXXXXX      AS PKGAVIKIGSSFK
Sbjct:    1 MGERAKESTVGITHFITENDTGFSGVLKQRYSDFIVHEVTRDGEVCKGTDFPGLLRPIEHERQPPPPAHGQPTAAAAHKETPSDSTASPTAARGSDAVEDGSKDKDGEGKGDGEGSPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDGSSGGGMXXXXXXXXXXXXXXXXXXXXXXXXXLKKQAKSGAEALLPVVGEQVAAKVEAFMLEGLGVTGKDKRTLTLPTADKNTRAKVYGLLKQNLSKYLLAVTVDDPASAPPPMAS-----------KTETFEAKDAEDGDAKATAGASDDKSGAGGEAPAAKEGNGTENPSSEKGGENGXXXXXXXXXEPAEKTAANTK-ASAGTPAAAKKPDPNGPKCVQLKMKPDWRNIDGGNKRRRGDLDRSGXXXXXXXXXRRWVWPEGRPEFCRFVLYKENSDTMGAVSRICKHLRFSSKVVGYAGTKDKRGVTAQWCTVKRKSIEELRSFNRPLGAFQGSIVLLGNFSYVAEPLKLGDLSGNRFGIVLRNLSLPSGG------------------ENGA---XXXXXGGQDASADEASKKEAEYAE-------------------------------AAVVETGAKLKETVDRRCAWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRMGENEATHASKVHYLKNPTDIQGTLNKLPFFMDAEKSMMQALLKGGPNAHIDALKAVPKNLQLMYLHAFQSLLWNLAASERIKLYGRDAAVEGDLVFPRDSPAAAIEDDATLVDPAIGAAAVDAAERDGDGEDEGGEGQQPEAKRAKTAETSLPPVHVVTKEDVEEGTFRLTDVVLPMPGSGVTYPTNGVKECYTKALEERGVTEACFSSSTQKAFKLGGAYRRLLQVPKDMQWELKRYDDHTLHLINTDIDDLLDIDDARIAKEDAERKXXXXXXXXXXXXADPSSXXXXXXXXXXXXXXXXDPAAAEADVEKQPPSTKK-EEGDSKATTPDAMDVDGAAPESKCEASPPGSRGGRFHGLCLHFTLPSSSYATMCLREVTQQDTSTIYHTSLNSLAAGQHPAKKGSSAXXXXXXXXXXXXXXXXXXXXXXXXXEKASPPKGAVIKIGSSFK 1055          
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: A0A059D3U1_EUCGR (TRUD domain-containing protein n=5 Tax=Myrtoideae TaxID=1699513 RepID=A0A059D3U1_EUCGR)

HSP 1 Score: 259 bits (663), Expect = 1.890e-70
Identity = 200/654 (30.58%), Postives = 297/654 (45.41%), Query Frame = 1
Query: 1333 GRWAWPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFNRPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPKDSAAVLDDNDEPVVELANAASEASADVEGEDADAGGEGEPQGKRAKTGGAPLP-----PVHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYTKALEERG--LTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDLLDIDDARIAKENAEKKXXXXXXXXXXXXXXXXXXXXXXXAPAETNKTDLGQQEQPPSVKEGEAGDGKPASDAMD-VVDATAE--VKPSAESKGRFH-ALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLN 3261
            G  +WPE   +F RF LYKEN DT  A+  + K L   S+  G+AGTKDKR V++Q  TV ++   +L + N  L   +     +G+F YV++ L LG L GNRF + LR +                                                                                             A  E+T++     + +RGFINYFGLQRFGSG  PT  +G A+L+ +W  AV +I+ PR GE +    ++ ++ K   DI GTLS++P  + AE++++Q+  +  P  ++ ALKA+P+ L++MY+H++QS +WN AAS R++ YG + VV GD+V  ++       +DE V E+    SE   D   +  D            +T G  LP     PV  +T ED+  G +   D+VLPMPGS V YP+N V + Y    ++    LTE+  N       ++ G YRR+ Q P D +WEM RY D+++ L  TD+D +      R+ + N                                             VK  +  +G   +D +D V+  T E  V  S   +   H AL L FTLPS++YATM +RE+ +  TS +FH +LN
Sbjct:  183 GSSSWPEHVGKFLRFHLYKENKDTQEALGVIGKMLGIQSRSFGFAGTKDKRAVSTQRVTVFKQYASKLASLNEKLIGIK-----VGDFCYVKDGLVLGQLLGNRFTVTLRGVI--------------------------------------------------------------------------------------------ADSEDTIKAAADALGKRGFINYFGLQRFGSGSVPTHNIGAALLRGEWKTAVSMILDPREGEKDVIAIAREYY-KESKDIDGTLSRMPRHLVAERAVLQSFKKF-PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASARVQKYGSDQVVVGDMVHHQEH------DDENVAEVV---SECGNDDSSDAFD-------HVHLDETSGMDLPAEGHSPVKVLTSEDIASGRYSFDDIVLPMPGSRVIYPNNDVADIYHDLAKKDSISLTESVHNVKEFSITSMTGGYRRVFQKPMDYEWEMLRYSDYSVPLAETDLDKITKSKPLRLVEGNE-------------------------------------------CVKGKDFVNGNKENDPLDSVISLTRENSVNASISDRDEIHMALKLAFTLPSSSYATMAIRELLKTSTSVAFHKTLN 678          
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: A0A067DBE6_CITSI (TRUD domain-containing protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067DBE6_CITSI)

HSP 1 Score: 254 bits (650), Expect = 3.330e-70
Identity = 205/644 (31.83%), Postives = 292/644 (45.34%), Query Frame = 1
Query: 1345 WPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFNRPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPK--DSAAVLDD-NDEPVVELANAASEASADVEGEDADAGGEGEPQGKRAKTGGAPLPPVHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYTKALEERG--LTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDLLDIDDARIAKENAEKKXXXXXXXXXXXXXXXXXXXXXXXAPAETNKTDLGQQEQPPSVKEGEAGDGKPASDAMDVVDATAEVKPSAESKGRFHALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLN 3261
            WPE   +F RF LYKEN DT  A+  + K L    +  G+AGTKDKR V++Q  TV ++   +L   N+ L   +     LG+F YV+E L LG L GNRF I LR +                                                                                        VV++    E+ ++     +   GFINYFGLQRFGSG  PT  VG  +L+ +W  AV++I+ PR GE     +++ ++ K   DI GTL KLP  + AE++++Q L +  P  ++ ALKA+P+ L++MY+H++QS +WN AAS R++ +G E VV GDLVF K  D+   L   N E   E +N A ++S   E  + D      P G+           V  VT  D+  G + + DVVLP+PGS V YP N V E Y    E+ G  LTE+  N       ++ G YRR+ Q P D +WE+  Y D    L  TD+D +       I KE                               E + +D  +Q +  S     + +   A+ A +V     E    A+S+G+  AL L  TLPS+ YATM +RE+ +  TS +FH +LN
Sbjct:   24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIR-----LGDFCYVKEGLLLGQLLGNRFTITLRGV----------------------------------------------------------------------------------------VVDS----EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY-KETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD-----HPDGRHNL--------VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA-----------------------VCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532          
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: UPI001CF9B84D (multisubstrate pseudouridine synthase 7 n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CF9B84D)

HSP 1 Score: 259 bits (661), Expect = 7.700e-70
Identity = 202/646 (31.27%), Postives = 287/646 (44.43%), Query Frame = 1
Query: 1345 WPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFNRPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPKDSAAVLDDNDEPVVELANAASEASADVEGEDADAGGEGEPQGKRAKTGGAPLPPVHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYTKALEERG--LTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDLLDIDDARIAK-----ENAEKKXXXXXXXXXXXXXXXXXXXXXXXAPAETNKTDLGQQEQPPSVKEGEAGDGKPASDAMDVVDATAEVKPSAESKGRFHALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLN 3261
            WPE + +F RF LYKEN DT  A+  + K L    +  G+AGTKDKR V++Q  TV ++    L   N+ L   Q     +G+F YV+E L LG L GNRF + LR +                                                                                             A  E+ ++     +   GFINYFGLQRFGSG  PT  +G  +LK +W  AV +I+ PR GE     +++ ++ K   DI GTL KLP  + AE++++Q L +  P  ++ ALKA+P+ L++MY+H++QS +WN AAS R+K YG E VV GDLV+ K       DN E  +   N  SE+  +   ++ D G   E        G   L  V  VT EDV  G + + D++LPMPGS V YP N V E Y    ++ G  LTE   N       ++ G+YR++ Q P D +WE+ +Y D +  L  TD+D +       I K        EKK                          + N+ D G +    SV +G++ +G                    ES+    AL L FTLP++ YATM +RE+ +  TS +FH +LN
Sbjct:  218 WPEHQGKFLRFHLYKENKDTQEALGLITKMLGVQPRSFGFAGTKDKRSVSTQRVTVFKQHASRLAALNKRLIGIQ-----VGDFCYVKEGLLLGQLQGNRFTVTLRGVV--------------------------------------------------------------------------------------------ADSEDVIKASANSLGRLGFINYFGLQRFGSGSVPTQLIGATLLKGEWKAAVSMILDPREGERSEISKARQYY-KETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVKKYGTEQVVVGDLVYSKG------DNTEKEMTFVN--SESEDENSNDEDDCGRLDEVSATDLPVGTNNL--VKTVTAEDVHSGKYTIGDIILPMPGSRVIYPINDVAEVYHNLAKKDGISLTERVHNVKEFSIISMTGSYRQVFQKPLDFEWELLKYTDSSKPLAETDLDKIAKAKHLNIIKVEELVAGVEKKDPSDCMEHSESLENVVKLS------TDDNEADCGGEL---SVPQGKSLNGS-------------------ESEELQTALKLGFTLPTSCYATMAIRELLKTSTSVAFHKTLN 726          
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: A0A6J1KMR0_CUCMA (multisubstrate pseudouridine synthase 7 isoform X1 n=4 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KMR0_CUCMA)

HSP 1 Score: 257 bits (657), Expect = 2.190e-69
Identity = 202/646 (31.27%), Postives = 287/646 (44.43%), Query Frame = 1
Query: 1345 WPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFN-RPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPKDSAAVLDDNDEPVVELANAASEASADVEGEDA-DAGGEGEPQGKRAKTGGAPLPP---VHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECY--TKALEERGLTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDLLDIDDARIAKENAEKKXXXXXXXXXXXXXXXXXXXXXXXAPAETNKTDLGQQEQPPSVKEGEAGDGKPASDAMDVVDATAEVKPSAESKGRFHALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLN 3261
            WPE   +F RF LYKEN DT  A+  + K L   ++  G+AGTKDKR +T+Q  TV ++    L   N R +G      + LGNFSY++E L LG L GNRF I LR +                                                                                             A  E+T++     +   GFINYFGLQRFGSG  PT  VG ++L+ +W GAV +I+ PR GE     E++ ++ K   DI GTL +LP ++ AE++++Q L +  P  ++ ALKA+P+ L++MY+H++QS +WN AAS R++ YG + VV GDLV+ K++              A AA + S +   ED  DA        +   T   P      V AV+ EDV+ G F + DVVLP+PGS V YP+N + E Y    A +   LTE   N       N+ G+YR + Q PKD +WE+  Y D  L L  +D+D+LL      I KE   +K                          + N+ + G+  Q P +                                   AL L F LP+++YATM +RE+ +  TS +FH +LN
Sbjct:  221 WPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRAITTQRVTVFKQHASRLAALNDRLIG------IKLGNFSYIQEGLLLGQLLGNRFTITLRGVV--------------------------------------------------------------------------------------------ADSEDTIKTSAEALGRLGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGETNVIAEAR-NYYKESNDIDGTLKQLPRYLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKEN------------HTATAAVQKSEENVDEDCGDANTYDSCHLEEICTLDLPTERNKHVKAVSAEDVQSGNFTIDDVVLPLPGSRVIYPTNDIAEVYHDLAAKDSINLTETIHNVKEFSITNMTGSYRSVFQRPKDYEWELISYVDRNLPLAESDLDNLLKSLSVEITKE---EKMHDKSKDEDSLDSTEQSGSCKKSNKLQANENENGEAAQDPQM-----------------------------------ALKLSFNLPTSSYATMAIRELLKTSTSVAFHKALN 716          
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: A0A5D6YSG9_9STRA (TRUD domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YSG9_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.050e-68
Identity = 169/517 (32.69%), Postives = 257/517 (49.71%), Query Frame = 1
Query: 1333 GRWAWPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFNRPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPKDS--AAVLDDNDEPVVELANAASEASADVEGEDADAGGEGEPQGKRAKTGGAPLPPVHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYTKALEERGLTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDL 2877
            G+ AWP GRP+  +F+LYK N +T   + ++ K +  S    GYAGTKDKRGVT+Q+CT+ R S+E L   NR     +    L+G+  YV + L LG+L GN+F + +R L                                                      ADA                                    A++   V    +W   RGF+NYFGLQRFG+   PT EVG A+L+ D+A  V L++ P+ G+     E++  F +   D++  L  LP ++ AE++++Q L   G  AH  A++ +P++L++MY H++QS VWN+ AS+R+  +  +  V GDLV P D+  AA+LD+     V +    + A+  ++G+D DAG E  P  KR K G +   PV  VT E++ Q  F + DVVLP+PG  + YP NG+   Y + L   G+       +T   ++L G++R LL+ P  +  E+K Y+D T+ L+ TD+D L
Sbjct:  296 GKNAWPPGRPDHLQFVLYKRNLETNSVMGQLAKAMGVSVAAFGYAGTKDKRGVTTQFCTIYRGSLERLEMLNRAGRGLESFNFLVGDAKYVRDKLNLGDLQGNQFSLAIRGLP----------------------------------------------------PADAVPD---------------------------------AQIHAAV---ASWTA-RGFVNYFGLQRFGTKSVPTHEVGRAILQRDYARVVDLVLQPQEGDATKIAEARARF-QADQDVEAALRALPPYLIAERALLQGLKTYGLGAHAQAIQCIPRHLRMMYTHSYQSFVWNMVASDRVSQFASDAPVVGDLVIPHDAVAAALLDE----FVAVDETDATAAVPLDGDDGDAGSERAP--KRPKVGASIAAPV-LVTAENIAQ--FSVYDVVLPLPGYDIAYPENGLRARYEEILAADGVDFESLQRATNSEYHLPGSFRHLLKKPLAVSHEIKLYEDPTVPLLETDVDRL 713          
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: A0A1S3CHJ1_CUCME (pseudouridylate synthase 7 homolog isoform X1 n=10 Tax=Benincaseae TaxID=1003877 RepID=A0A1S3CHJ1_CUCME)

HSP 1 Score: 255 bits (651), Expect = 1.430e-68
Identity = 207/653 (31.70%), Postives = 293/653 (44.87%), Query Frame = 1
Query: 1345 WPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFN-RPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPKDS----AAVLDDNDEPVVELANAASEASADVEGEDADAGGEGEPQGKRAKTGGAPLPP-----VHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYTKAL--EERGLTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDLLDIDDARIAKEN--AEKKXXXXXXXXXXXXXXXXXXXXXXXAPAETNKTDLGQQEQPPSVKEGEAGDGKPASDAMDVVDATAEVKPSAESKGRFHALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLN 3261
            WPE   +F RF LYKEN DT  A+  + K L   ++  G+AGTKDKR +++Q  TV ++    +   N R +G      + LGNFSY++E L LG L GNRF I LR                                               V  N  D                                    V++A A+   T           GFINYFGLQRFGSG  PT  VG ++L+ +W GAV +I+ PR GE     +++ ++ K   DI GTL +LP ++ AE++++Q L +  P  ++ ALKA+P+ L++MY+H++QS +WN AAS R++ YG + VV GDLV+ K++    AAV +  +    +  +A S  S  +E              +  K G   LP      V AVT EDV  G F + DVVLP+PGS V YP+N + E Y      +   LTE+  N       ++ G+YRR+ Q PKD +WE+  Y D  L L  +D+  LL      I+KE   A K                          A  N+T+ GQ    P +                                   AL L FTLP+++YATM +RE+ +  TS +FH +LN
Sbjct:  221 WPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRSISTQRVTVFKQHASRIAALNDRLIG------IKLGNFSYIQEGLLLGQLLGNRFTITLRG----------------------------------------------VVANSED------------------------------------VIKASAEALGT----------HGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGETNEIAKAREYY-KESDDIDGTLKQLPRYLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLE--------------EMCKLG---LPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGSRVLYPANDIAEVYNDLATKDSISLTESVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHKLLKSQSVEISKEEKIANKSKIEDSLDSTDQSVCCKKDIQLE---AGGNETEYGQGTPDPQM-----------------------------------ALKLSFTLPASSYATMAIRELLKTSTSVAFHKTLN 718          
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: UPI0012630A26 (multisubstrate pseudouridine synthase 7 isoform X2 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI0012630A26)

HSP 1 Score: 252 bits (644), Expect = 5.830e-68
Identity = 200/641 (31.20%), Postives = 283/641 (44.15%), Query Frame = 1
Query: 1345 WPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFNRPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPKDSAAVLDDNDEPVVELANAASEASADVEGEDADAGGEGEPQGKRAKTGGAPLPPVHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYTKALEERG--LTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDLLDIDDARIAKENAEKKXXXXXXXXXXXXXXXXXXXXXXXAPAETNKTDLGQQEQPPSVKEGEAGDGKPASDAMDVVDATAEVKPSAESKGRFHALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLN 3261
            WPE + +F RF LYKEN DT  A+  + K L   S+  G+AGTKDKR V++Q  TV ++    L   N+ L   Q     +G+F YV+E L LG L GNRF + LR +                                                                                             A  E+ ++     +   GFINYFGLQRFGSG  PT  VG  +L+ +W  AV +I+ PR GE     +++ ++ K   DI GTL KLP  + AE++++Q L +  P   + ALKA+P+ L++MY+H++QS +WN AAS R++ YG E VV GDLV+ K       DN E   EL    SE  A+   +  D G   E        G   L  V   T ED+  G + + DV+LPMPGS V YP+N V E Y +  ++ G  LTE   N       ++ G+YR++ Q   D +WE+ +Y D +  L  TD+D +       I KE  E                            + N+ D G++ + P  K     D +             EV+          AL L FTLP++ YATM +RE+ +  TS +FH +LN
Sbjct:  171 WPEHQGKFLRFHLYKENKDTQEALGLIGKMLGIQSRSFGFAGTKDKRAVSTQRVTVFKQRASRLAALNKRLIGIQ-----VGDFCYVKEGLLLGQLQGNRFTVTLRGVV--------------------------------------------------------------------------------------------ANSEDVIKASANSLGRLGFINYFGLQRFGSGSVPTQLVGATLLRGEWKAAVSMILDPREGERNEISKAREYY-KETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNFLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGTEQVVVGDLVYSKA------DNTE---ELTCVNSECEAENCNDIDDCGQLDEVSATELPVGRNNL--VKTATAEDIHTGKYTIDDVILPMPGSRVIYPTNEVAEVYHRLAKKDGINLTEIVHNVKEFSITSMTGSYRQVFQKLLDFEWELLKYTDASKPLAETDLDKIAKAKPLSIIKEE-ELVGGDEKKDPSDCIEQFESLENVIKLSTDDNEADCGRELRVPQFKSLHGSDSQ-------------EVQM---------ALKLGFTLPTSCYATMAIRELLKTSTSVAFHKTLN 678          
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: A0A1U8DTS7_CAPAN (LOW QUALITY PROTEIN: multisubstrate pseudouridine synthase 7 n=9 Tax=Solanoideae TaxID=424551 RepID=A0A1U8DTS7_CAPAN)

HSP 1 Score: 249 bits (635), Expect = 1.670e-66
Identity = 199/654 (30.43%), Postives = 293/654 (44.80%), Query Frame = 1
Query: 1342 AWPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFNRPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPKDSAAVL--------DDNDEPVVELANAASEASADVEGEDADAGGEGEPQGKRAKTGGAPLPPVHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYTKALEERG--LTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDLLDIDDARIAKENAEKKXXXXXXXXXXXXXXXXXXXXXXXAPAETNKTDLGQQEQPPSVKEGEAGD---GKPASDAMDVVDATAEVKPSAESKGRFH-ALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLN 3261
            ++P    +F RF L+KEN DT  A++ + K L   S+  G+AGTKDKR V++Q  TV ++   +L   N+ L   +     +G+F +V+E L LG L GNRF I LR                                       GVS   E++ K                                       + V  G               + GFINYFGLQRFGS   PT  +G A+L+ +W  AV LI+ PR GE  A    + ++ K   D+ GTL +LP ++ AEK+++Q L R  P  ++ ALKA+P+ L++MY+H++QS +WN AAS R++ +G + VV GDLV+ K+   V         D N   + + +N    +  D+            P+ +          PV  + +ED++ GT+ + DV+LP+PGS V YPSN +GE Y    ++ G  LTE           N+ GAYRR+ Q PKD +WE+  Y D T+ L +TD+D         IAK   + K                                         V+E ++GD   GK   + ++        K  +        AL L FTLP++ YATM +RE+ +  TS +FH SLN
Sbjct:  223 SYPGHLGKFLRFHLFKENKDTQEALNVIAKMLGIQSRSFGFAGTKDKRAVSTQRVTVFKQQASKLAALNKRLIGIK-----VGDFCHVKEGLLLGQLYGNRFTITLR---------------------------------------GVSAESEDIIK--------------------------------------ASAVALG---------------KHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNAISTVREYY-KESGDVDGTLRQLPRYLVAEKAILQCLKRS-PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKHGFDQVVLGDLVYSKEQHIVKETFVAECEDVNVNNMDDYSNLDETSETDL------------PEERNI--------PVKVINEEDLKSGTYTIDDVLLPLPGSRVIYPSNDIGEVYRDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTVPLADTDLD--------VIAKSVKKSK-----------------------------------------VREEDSGDMVTGKGHEEKINSESGMQSEKSHSGGNAESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLN 708          
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Match: UPI0010A55F59 (multisubstrate pseudouridine synthase 7 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A55F59)

HSP 1 Score: 247 bits (630), Expect = 5.330e-66
Identity = 210/695 (30.22%), Postives = 308/695 (44.32%), Query Frame = 1
Query: 1222 KCVQLKMKPDWRRAGGGRKXXXGDLDHXXXXXXXXXXGRWAWPEGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQWCTVKRKSIEELRTFN-RPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFGIVLRNLTLPGASGSNSNSTGNGRXAAAPRTENGAGSGAVNPEGGVSTAGEEVTKNGSDDAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEAGAKLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALLRGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEGDLVFPKDSAAVLDDNDEPVVELANAASEASADVE-----GEDADAGGEGEPQGKRAKTGGAPLPPVHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYTKALEERG--LTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLHLINTDIDDL---LDIDDARIAKENAEKKXXXXXXXXXXXXXXXXXXXXXXXAPAETNKTDLGQQEQPPS----VKEGEAGDGKPASDAMDVVDATAEVKPSAESKGRFHALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLN 3261
            KC+++++  D  R  G       D D+          G   WP    +F RF LYKEN DT  A+  + K L    K  G+AGTKDKR V++Q  TV ++    L + N R +G      + +G+F YV+E L LG L GNRF I LR +                                                                                             A  E+T++     + + GFINYFGLQRFGSG  PT  +G A+L+ +W  AV +I+ PR GE  A  +++ ++ K+  D++GTL +LP  M AE++++Q+L +  P  ++ ALKA+P+ L++MY+H++QS +WN AA+ R++ YG E VV GDLV+ KD+AA             N     S D       GE++    E E      +        V  +T ED+E G + + DV+LPMPGS V YP+N V + Y    ++    LTE   N       N+ G+YRR+ Q P + +WE+  Y D +  L  TD+D +     IDD +                                AP    + +L    QP S     K   A D  P  +   + D +     S +S+    AL L FTLPS+ YATM +RE+ +  TS ++H +LN
Sbjct:  148 KCIRVRVDSDGPRNKGRNSRKRKDRDYKPFDSR----GSENWPANVGKFLRFHLYKENKDTQEALGVIGKMLGTQPKSFGFAGTKDKRAVSTQRITVFKQRASRLASLNDRLIG------IKVGDFCYVKEGLLLGQLFGNRFTITLRGII--------------------------------------------------------------------------------------------ADSEDTIKASADALGKHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKLAVDMILDPRDGERNAITKAREYY-KNSNDVEGTLKQLPRHMVAERAVLQSLKKA-PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAATTRVQKYGTEQVVVGDLVYRKDNAA------------GNGTGFVSRDCSVSCNNGENSS--NEDEEMDVHEERNSH----VKVMTAEDLEAGCYTIDDVILPMPGSRVVYPTNDVAQVYHDWAKKDAISLTECVHNVKEFSITNMTGSYRRVFQKPINFEWELLTYTDRSKPLAETDLDKMGKTRPIDDFKQVN-----------------------------APRWEKEENLDCIRQPESSGDDAKLEIANDETPGDEVELLQDESICTSNSQDSQ---IALKLSFTLPSSCYATMAIRELLKTSTSVAYHKTLN 688          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.73.11 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP90_9PHAE0.000e+063.75TRUD domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A059D3U1_EUCGR1.890e-7030.58TRUD domain-containing protein n=5 Tax=Myrtoideae ... [more]
A0A067DBE6_CITSI3.330e-7031.83TRUD domain-containing protein n=1 Tax=Citrus sine... [more]
UPI001CF9B84D7.700e-7031.27multisubstrate pseudouridine synthase 7 n=2 Tax=An... [more]
A0A6J1KMR0_CUCMA2.190e-6931.27multisubstrate pseudouridine synthase 7 isoform X1... [more]
A0A5D6YSG9_9STRA1.050e-6832.69TRUD domain-containing protein n=1 Tax=Pythium bra... [more]
A0A1S3CHJ1_CUCME1.430e-6831.70pseudouridylate synthase 7 homolog isoform X1 n=10... [more]
UPI0012630A265.830e-6831.20multisubstrate pseudouridine synthase 7 isoform X2... [more]
A0A1U8DTS7_CAPAN1.670e-6630.43LOW QUALITY PROTEIN: multisubstrate pseudouridine ... [more]
UPI0010A55F595.330e-6630.22multisubstrate pseudouridine synthase 7 n=1 Tax=Pr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:244214..256781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G805
Preferred namePUS7
PFAMsTruD
Model size3439
Max annot lvl2759|Eukaryota
KEGG koko:K06176,ko:K08831
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000455,GO:0001522,GO:0002682,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016556,GO:0016853,GO:0016866,GO:0017148,GO:0019222,GO:0019899,GO:0022613,GO:0031118,GO:0031119,GO:0031120,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031429,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034470,GO:0034641,GO:0034660,GO:0040031,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045595,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072588,GO:0080090,GO:0090304,GO:1901360,GO:1901532,GO:1902036,GO:1902494,GO:1903706,GO:1990481,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000380,GO:2000736
Exons11
Evalue0.0
EggNOG OGsCOG0585@1|root,KOG2339@2759|Eukaryota
Ec32 ortholog descriptiontRNA Pseudouridine Synthase D domain-containing protein
Ec32 orthologEc-06_009680.1
EC2.7.11.1,5.4.99.27
Descriptionpseudouridine synthase activity
Cds size3438
COG categoryL
BRITEko00000,ko01000,ko01001,ko03016,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.73.11prot_P-littoralis_Contig191.73.11Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 244214..256781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789920.1865482-CDS-P-littoralis_Contig191:244213..2448651680789920.1865482-CDS-P-littoralis_Contig191:244213..244865Pylaiella littoralis U1_48CDSP-littoralis_Contig191 244214..244865 -
1680789920.2049203-CDS-P-littoralis_Contig191:246573..2467051680789920.2049203-CDS-P-littoralis_Contig191:246573..246705Pylaiella littoralis U1_48CDSP-littoralis_Contig191 246574..246705 -
1680789920.216618-CDS-P-littoralis_Contig191:246930..2472661680789920.216618-CDS-P-littoralis_Contig191:246930..247266Pylaiella littoralis U1_48CDSP-littoralis_Contig191 246931..247266 -
1680789920.2250948-CDS-P-littoralis_Contig191:248889..2490531680789920.2250948-CDS-P-littoralis_Contig191:248889..249053Pylaiella littoralis U1_48CDSP-littoralis_Contig191 248890..249053 -
1680789920.2349064-CDS-P-littoralis_Contig191:249384..2499691680789920.2349064-CDS-P-littoralis_Contig191:249384..249969Pylaiella littoralis U1_48CDSP-littoralis_Contig191 249385..249969 -
1680789920.2441-CDS-P-littoralis_Contig191:250551..2507161680789920.2441-CDS-P-littoralis_Contig191:250551..250716Pylaiella littoralis U1_48CDSP-littoralis_Contig191 250552..250716 -
1680789920.2580638-CDS-P-littoralis_Contig191:252058..2526161680789920.2580638-CDS-P-littoralis_Contig191:252058..252616Pylaiella littoralis U1_48CDSP-littoralis_Contig191 252059..252616 -
1680789920.2687185-CDS-P-littoralis_Contig191:253286..2533791680789920.2687185-CDS-P-littoralis_Contig191:253286..253379Pylaiella littoralis U1_48CDSP-littoralis_Contig191 253287..253379 -
1680789920.2767835-CDS-P-littoralis_Contig191:254229..2546611680789920.2767835-CDS-P-littoralis_Contig191:254229..254661Pylaiella littoralis U1_48CDSP-littoralis_Contig191 254230..254661 -
1680789920.2860155-CDS-P-littoralis_Contig191:255434..2555441680789920.2860155-CDS-P-littoralis_Contig191:255434..255544Pylaiella littoralis U1_48CDSP-littoralis_Contig191 255435..255544 -
1680789920.299258-CDS-P-littoralis_Contig191:256570..2567811680789920.299258-CDS-P-littoralis_Contig191:256570..256781Pylaiella littoralis U1_48CDSP-littoralis_Contig191 256571..256781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.73.11

>prot_P-littoralis_Contig191.73.11 ID=prot_P-littoralis_Contig191.73.11|Name=mRNA_P-littoralis_Contig191.73.11|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1146bp
GGGGGGGGRRGGRGGGGRGGWRGGNRGGGGGRWGRGGGRGGGGGRGRGGG
GADWNDRRPAEPTAETLALMGTRATESTVGITHFMTESDTGFSGVLKQRY
SDFVVHEVDPDGNVCKGTDFPGLLRPIEHDRQSASSHSSVEPQPAAAAAA
AVASSSNESVPPSEAASTTKEGAGEDNKNSAEGKGEKGKEEGGGTQEEEE
KKEEEDEDAKRERLEEEEKAREKEEEEELKTLIKSGAQSLIPVVGEEVTA
KVEAFVLEGISIRGRDQRTLTLPTTDKTIRTKVYGLLKQNLSKYLLAVTV
DDPASIPIPPPKTETETEVKTEIKIDTAVTKASDGDGTPPEGAAAAEATE
STVGNGSSDTGGGGGGGGDDAKKHPSEGKPVEKQNGDAAPGQAAEAAAVK
KPDPNGPKCVQLKMKPDWRRAGGGRKRRRGDLDHGGAGGGRGGGGRWAWP
EGRPEFCRFILYKENNDTMGAVSRMCKHLRFSSKVVGYAGTKDKRGVTSQ
WCTVKRKSIEELRTFNRPLGAFQGSIVLLGNFSYVEEPLKLGNLSGNRFG
IVLRNLTLPGASGSNSNSTGNGRGAAAPRTENGAGSGAVNPEGGVSTAGE
EVTKNGSDDAADADADADADADAAATAAAAATAAAAAEAEAEAAVVEAGA
KLEETVERRCTWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAV
RLIMTPRLGENEATHESKVHFLKHPTDIKGTLSKLPFFMDAEKSMMQALL
RGGPNAHVDALKAVPKNLQLMYLHAFQSLVWNLAASERIKLYGREGVVEG
DLVFPKDSAAVLDDNDEPVVELANAASEASADVEGEDADAGGEGEPQGKR
AKTGGAPLPPVHAVTKEDVEQGTFQMTDVVLPMPGSGVTYPSNGVGECYT
KALEERGLTEACFNTSTQKSFNLGGAYRRLLQVPKDMQWEMKRYDDHTLH
LINTDIDDLLDIDDARIAKENAEKKKQEEDAAAAAAAAPAAAAAPAPAAP
AETNKTDLGQQEQPPSVKEGEAGDGKPASDAMDVVDATAEVKPSAESKGR
FHALCLHFTLPSAAYATMCLREITQQDTSTSFHTSLNTLAPGQHPAKGAA
SVEGGATAADVEAGGTGAEAGGGDKGDANASTPKGAVIKIGSSFK*
back to top

mRNA from alignment at P-littoralis_Contig191:244214..256781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.73.11 ID=mRNA_P-littoralis_Contig191.73.11|Name=mRNA_P-littoralis_Contig191.73.11|organism=Pylaiella littoralis U1_48|type=mRNA|length=12568bp|location=Sequence derived from alignment at P-littoralis_Contig191:244214..256781- (Pylaiella littoralis U1_48)
GGCGGTGGTGGTGGCGGTGGCGGCCGAAGGGGGGGCAGAGGAGGGGGAGG AAGAGGTGGTTGGAGAGGTGGTAATCGAGGTGGCGGGGGTGGTAGATGGG GCAGGGGAGGAGGACGGGGCGGCGGTGGCGGGAGAGGCCGAGGAGGGGGT GGCGCAGACTGGAATGACCGCAGGCCGGCCGAGCCCACAGCGGAGACCCT GGCGCTGATGGGTGAGTGAAGAAGCGGGTGCATAGAGTGATATGGGGGTT GTACCCCCCCAACGCAGCGGGGTGGTGGGGTTAGAAACGCTGTGGAGCAC AAGTTCCGAATTGGTTTGCATGAGACCTGTACCGGGTAAGGCTCAAGAAG CAACCCGTAAGCTTGCTTTGCTTTCAGTATTTTAGAGTCTGTTTTTCTGT ATAATTTTGCTGGCTGGCCACCTAGAGAGGAAAGCCTATGTGGTTTCGTG CATGTGTGTTTCCTCCTTTTATTTCCTTTTTGCTTTCCATTTTCTCCTTA CACGATATATGCCTAGTTTGTGGCCACAGGCTAAACTTTGGCCTGGGGCT GATGTGCGAATTATCTAGATTAACAACAACAACAACAACGCGATCAGGGG TTAGCTGCACGGCATGCCTGTGGGGTAGTTGCAGACTCCCGCGTCCTGTC ATACTTTTTTTAGCACCACGTACTTGCACGGTATGCTGATGGCAAGACTG TTGCACCGGGCGGCATCGCGCTCGGTGCAAGCCACAAAAGGGGTTCAGAT TTGGCGTGCGCTTTTTGATCACCGCACGTTAGGTCGATCTCCACGCCGTT TCGCTCGTGCTCCCGGCCTCGACTCGTCACCAGCTACAAATGATCCAATG ACGATCTTCCGTCCAGCGCTCTACTCGCAAAGACGTGCTATGTACCCCAT CACATCACCCCTATGGCGTTGAAGCAAATGACCCAGTGCCTCTAGCCTCT AGGGCGTTGAAACAAATGATCCAGTGCTCCTAGCCTATCTAGCGTTGAAA CACATCCAGTGCCCCTAGCCTCTATGGCGTTGAAACAAATAATCCAGTGC CCCCAGCCTCTGCGCGCGAAGCTGTTGGTGCCTTACACTCTCAAACCGAC GAAGCATATATAAATATTTCGTGCGTTGGGCACTGCAGCGGGTAAAGCAG TGCAGCACACCCTTCGTCTCGCGCGTGGCGAACCTATCATAAGTTTTTTA TTTAATTCTTGGCGCACATCACCTGTATGTACCGCAGGCACACGGGCCAC AGAGTCAACTGTTGGCATCACGCACTTCATGACGGAGAGCGACACGGGCT TCTCGGGGGTGCTGAAGCAGCGCTACTCCGATTTCGTCGTTCACGAGGTG CGCACGCCTTCGTTTGCTGTGTACGCAGGAAGCGACCGGCCTTCTGCTCT GCTTCCGCCGACTTCTTGTCGTCATATATGATACCGGTATGTGCCAAGCA ATGTCTCTGGGTGTAATGCCATATTACCTACCGGGATACCCTTGTCCTCA GGGGTGGTCACCGAACTATTCACGTACGGGTGCCATCCCGGTCCTTTGAC CCCATGCGAGAACTGGTGCACAACATCAACCAATTTCAGGCGGGTGGTGC TGTGTGTTCTCATCATTCGCACCACAGCCCGTTGGATGTGCGAGTAGCCC GCGCCCACGCCTTTTTCTCTCTTCGCGTATTTTCCGGTCCCACTGCTATG TTGATACGACGACATATACTGCACAGAACCGAAAGGTGTAGACTGGCATC CAGAGAATGTGGGTTGACAACACACACATACACAAACACACAAACTAGCC TATTTTTCTGTATTTTTGTACTTCGGCCACCACAGATGGTACCCCAACGG TAGTATGTCTGATTTCTGATATATTGTAGGTAACCATCGTTTATTTCATT TTATTTTGTTTTCCTCCTAGCACGGTATGTGCCGGGTTTGTGACCACGGG CTAGAGTGTACCTTCTGCGATAATCAACAACACAACAACAACAACAACAA CACACACACATCGTACATCGTTGCCTCCGCCTGACCCTCATGTATCCCTC GCCCCTCGTCTGCCCCCGACACGAACGACACAATCTGATGCATATCATGC CGAAATGTGGTCGAGTCCAGGTTGATCCAGATGGAAACGTTTGCAAGGGC ACGGACTTTCCGGGGCTCCTACGGCCCATCGAACACGATCGGCAATCGGC ATCCTCGCATTCTTCCGTTGAACCGCAACCTGCTGCTGCTGCTGCTGCTG CCGTAGCTTCATCTTCGAATGAGTCGGTGCCACCGAGCGAGGCTGCCTCG ACCACAAAGGAGGGTGCTGGAGAGGACAACAAGAATAGTGCAGAGGGCAA GGGAGAGAAGGGCAAGGAGGAGGGAGGAGGCACACAGGAGGAGGAAGAGA AGAAGGAGGAGGAGGACGAGGATGCGAAGCGCGAAAGACTGGAAGAGGAG GAGAAGGCTAGGGAGAAGGAAGAGGAAGAAGAGCTGAAGACACTTATCAA GAGCGGGGCTCAGAGTCTTATTCCTGTGGTTGGGGAGGAGGTGACCGCCA AGGTGAGTTGTTCGAGCAAAAGTGTCCAGAGCTGTCTTTTTGGTTGATTA TGACTAAACACGAGAGGGAGTTCACAGCAATGGATGGGTGATACTTCGAA GTATATACGAAGTATTTTTTTCGCTGTGGATTGAATTGGTGCAAAGCAGT AGTTGGGTGATGTGTGGTTATTTGTCTGTGACACCGGTAGATTTGATTTT AAGAAACATACTATAATACTTCGTATCAAAGGAAGAACACCCACCCGAGA CGGGAGGGGCTCCGTGGGATGTGTTGAGTTCTTTACGGAGAGGGTTCGGT ATGTCGGCTGGGAATGAAAACACCTTTAGAGGATCAGGATGACTTTTTTC ATTTTATTCAGGAGCTTTCATTCACTATTCTCATTCGCAGGGACTACAGA AGATTTCGACGGCGCCGCAAGCGACCTCCTCACGTGGGCGTCCTACTTTC ACTGCTGCCCCGAACCGTCCTCGCGGCTTTATACCTAGCTCCAAGCACGG GGCCTTGTGTTGATTCCATTGCCCGAGACACGCATCGAGGTTGGCGTCAC CTATTGTGTTTTGGGTGCAAAAGCGGTATAAAGCTTTGGGTATTAAGGCG GTATACAGCGTATAGCTGCAACCGTTGTCGTGGGTGAAGAGTTTGTTTTT TCTGTCGTGGCCACCGCAGGAAACAGCAGCAGTTTGAAGGGTCGCTTTCC TCGTGACCGGGCTTGCTTCCTGTGTACGTTTTTTTTTTATTTATCTTGCT GGAGCGCCTCTCCTTTCGATCCCTTCGAAGATCTTAATTCTGGTGTGCGT GCTGCGTGCTGGTTTGACCGTTTTCGCCGCCCCGATGCCGGTCACGTCTT AGGTGGAGGCGTTCGTGCTGGAAGGCATCAGCATCAGGGGCAGAGACCAG CGGACCTTGACGCTACCGACAACCGACAAGACCATCCGGACGAAGGTAGG TGTTGCAAATGGTAGTGGGGGGTCCCTCTGCCGTCGTGTCGTCATGAGCG CCGGCTTGATGGTGCGAGTGAGAATCGCTCGGGTAACGAATATTGACGGG TTTTTTTTGCGCCAGAGCCATTGGGCATCGTGTTGTACATTTTCCGATTT CTATTATTGCCCGGGTCCGCAGAAATACTGATTTTGTGGCCTGGCACATG TCGGTACTGCTGCGGGCCCCCCGTGCCATGTACACCACCACTTGACCGCG CCGTTGAGTCTACTTCTACAAGTCGAAGCCGTGGAGATTTTGTCGCCGTT GCTGTTGTTGTTGGCGTTTTCACGTCAGAATGGTCTGTGCGACTTAGCAC CCCCCTCCTCCGCACTGATCCTCCAACCAATGAGAGACGATTTGCCCGTC CGTTGTCACAGGCTATTGAACACAAGCCTGGCACGTACAGCATGATGCAT CCAGGGAAGTCCTTTCCCCTCGCTTGTCTACAATAATATTGTCAACCATA GCCCGCGTTGTTCCTCGTGCTTCGAGTTTACGACGCCATGAAGATAGAAC GACCTGAGCGGCGTGATCCCAAGTGATTTATTTTTTATTTTTCAGTGTTT CGTTCTTCCTCACGTTGCCTCACTGCTGTACTTGTGCCGTGTTTCCTTCC TTGCTGTGGCTTCAGGTGTACGGCCTCCTGAAGCAAAACCTCAGCAAGTA CTTGCTGGCGGTTACCGTGGACGACCCCGCCTCGATCCCGATCCCGCCTC CGAAAACAGAAACCGAAACCGAAGTCAAAACCGAAATTAAAATCGACACC GCCGTGACTAAGGCTTCCGATGGTGATGGAACTCCCCCCGAGGGTGCCGC TGCTGCCGAAGCTACAGAGTCAACCGTTGGGAACGGCAGCAGTGACACTG GCGGTGGCGGTGGCGGTGGCGGTGACGACGCCAAAAAGCACCCCTCCGAA GGTAAGCCCGTAGAAAAGCAAAACGGAGATGCGGCGCCAGGCCAGGCTGC TGAAGCGGCCGCTGTCAAGAAGCCGGACCCGAATGGACCCAAGTGCGTGC AGCTCAAGATGAAGCCCGACTGGCGCAGAGCCGGGGGAGGAAGAAAGCGC AGAAGGGGAGATCTGGACCATGGCGGGGCGGGGGGGGGCAGGGGTGGCGG AGGGCGCTGGGCGTGGCCCGAGGGTCGCCCCGAATTCTGCCGCTTTATCC TATACAAAGAGAACAACGACACGGTGAGCGGGATAGGGTTAGTTGGACCG TTTCCTACGGCGGCCCAGGGATTTTTGGTCTGGGTTTTGGAACCCTTTTT CAGCCCAAATTATCCCAAGGAACGCCCACAGCCCCCCCCCCCCAAATAGC GACCTTGTTAAGCACAACAAGAGACGGCACCAACCAGAACTCGGCCCCCG TGGGACACCAATGGCGATCAAACCTGTTGGAATGCACTCTCCCGTATGCT GAGGTTTGGCTGCAGAAAGTTTGGTGGGTGTGGGCTTCGGCTGTTGCGAG ATTTGGCGGCGACGTGTGTAGAGGTGCGTAGAAAAATCCGGCGAAAATGA AGAACGTCGTTCGAGACTTTTTTCTGCCACAAAAAGCGGGCTCGGACAAC GTTACTTTCTTCACCGGATTTTTCTGCCTCGATCCACACCGCCACCAGAA TCTCGCCACAACAGCTAAGGCCCACACCCACCAAGCTTCCTGCGGCCTAC CTCAGAACACTAGAGCGTAGGCCCCACCAGTTTTGGTCTCGATTGGTGTC CCAGAGGGCGAGGTTTGCTTGGTGCTGTCGTCTTTTGTGCTCAAAAAGTA GCCTTTTCAGCCGTTTGGTACTCGTACCAGTTACAAAATCACCTCGAGAA CATCAGGACCGTATGAAACAGCCTCAGGATGTTCAGAGTATTCAGACAGA ACAGTGGTGGTGGAATGGCGTTTGAGTGTTTTGTGGACCATTTCGGTAGA GGATTTCACCTAGGACCCGGTCTGTGTTCGGCTGCTTTATACTGGGATGG CGTTGAGTATTTTATGGACCATTTTGGTATAGGGTATTCGTTTGGCGCGC GTAGAACCAGCGCCTCAGAAGCAACTATTACCTGTAGGACCCGGTCTGTG TCCTGCTGTTGCTGTCATACTGGAATGTAGGCGGAGGTCGTTGTTCGTCC AGGTTGTGTCGTTCGTCAAGGAGGCGTTTTCGCGGGTTCACTTCACTCAC GTCGCTAGCAGAATGTCCATTCACGGGTGTTTCTATTGGTCGTTCTTCGA GGAGGCGTTTTCGCGGGTTCACTTCACTCACCCCTTGTAGGCAAAATGTC CGTTCACGGGTGTTTCTGTTGGGGGGGAGTCACGCGGGGCTTTTGATCGA GACATTTGAATGTACGTAGCAAGTGATGCGTGCAAGTCCAGCTTGTCGAC GAGTTTCATTTTTTCGGCGCATGAATGAAAGAAGTTATTACCCTGTTTTT AGGAAAAAACAGCAGTCGTATCCCGTCCACCGTATCAAACTAATTTGTAC GACTCCCGCTGTTTTTTTTTTTTTCTGATTTCGCCCTGTCGCTGCATTAC CGCCTGCGTCACCAGATGGGAGCGGTCAGTCGCATGTGCAAGCATCTCCG TTTTTCGAGCAAGGTGGTTGGGTACGCGGGCACGAAGGACAAGCGGGGTG TAACGTCGCAGTGGTGCACGGTCAAGAGAAAGTCCATCGAGGAGCTCAGG ACCTTCAACCGTCCTCTCGGCGCCTTCCAGGTGACAGACAAGCTATGGTT TTCGCTGCCCCCCCATTTTTGTTTGTCGGAAGGTGTCGTGTGTCGAAGAA CGAAAAGTACCGTCGTGTCAGAAGGCAATTCTTGCTTGTTGTTTGTTACA ACAGGGTGTGGTGTTTGTTGTCCCATAGCGTCTCGAGAGGCATGTATTTC TTGTTGTTTGTTGCAACAGGGTGTGGTATTTGTTGTCCCATGGCGCCTCG AAAGGTATATCTTGCTTGTTATTACAACAGGGTGTGGTGTTCTCTGCCCC ATAGACTGTTTTTCTCTCGAAGAAGTCGGGTTTGTTTTGATGCAAACGCG ACCGCTCCTTACTTTGTATTCTTCCTCCTCTGTGGCCACTACATACAGCA GTATGGCGAAAGGTGCAAGCGCCTGATGGATCGTGGTTCGTGCTGCTCAC ACGGTGTGTGCGTGGACGTGGACACTGTAGCTCTTCCATTGCGTTTAGAC TCACACGCCCGTCTTGCTCTCCGATGTAACACATCCCTTGATGCCTGCCT GCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCGGCGCAATTTTT CCGCGAGAGCAGGGGTCGATCGTCCTCCTGGGAAACTTCTCCTACGTGGA GGAGCCGCTAAAGCTGGGAAATCTCTCCGGAAACCGCTTCGGCATCGTCC TCAGAAACCTCACCCTACCGGGGGCTTCTGGCAGCAACAGCAACAGTACC GGGAACGGCCGAGGAGCCGCCGCCCCCCGCACCGAGAACGGTGCCGGAAG TGGTGCTGTTAACCCTGAGGGAGGCGTATCTACCGCCGGGGAGGAAGTAA CGAAGAACGGTTCCGACGATGCTGCTGATGCAGATGCTGATGCAGATGCT GATGCTGATGCTGCCGCTACCGCTGCTGCTGCCGCTACCGCTGCTGCTGC AGCGGAGGCGGAGGCGGAGGCGGCGGTGGTCGAAGCGGGTGCGAAGCTCG AAGAAACGGTCGAACGGCGCTGCACGTGGGTGAAGGAGCGAGGGTTCATC AACTACTTCGGCCTTCAGCGGTTCGGGTCTGGGGGGGCGCCGACGAGCGA GGTGGGGCTGGCCATGCTCAAGGAGGACTGGGCGGGGGCGGTGAGGCTCA TCATGACGCCGAGGCTCGGCGAGAACGAAGCTACGCACGAGAGCAAGGTG TGGTGGTGTTGTGGCAGACTGCCGTCCTTCGTGGATGCCTGAGGCAGACA CACTGCGAGCCGATATAGAAAACCACACTCACCTCTCAACCCTTGCGTGC CGTGTCTTTTATCATTCAAGAGCAAGACGACCTGGTATTTTATACTCCGA CGGGCATGAAGGCCGTTTTGACCCGATTGACCCGATTGACGTTCTTGGTG GATGTCGGGAACAGCATGACGCAAAGCCGAATACCGCTATATGAAACCTT GATCGATTACCAACCCCACAGCGCCGCGTCTCTCGTGCTGTCTCTCGTGC TGTCATCCTGTTGTTTGGGCAAAAAAAGGTACACTTCCTTAAGCACCCGA CGGACATCAAGGGAACTTTGAGCAAGCTGCCATTCTTCATGGATGCCGAG AAGAGCATGATGCAGGCCCTGCTCAGAGGAGGCCCGAACGCGCACGTCGA CGCCCTGAAAGCCGTGCCCAAGAACCTTCAGCTCATGTACCTGTGAGTGA GATCACTTTTTCGTTTTTGTTGTTGAATCTCACGTTAGCTTCTCTCCGGA GGAGCCTAGCCAGTGATCACAGCGGTCCATACACAAAAATCGTGCCTTGA AGGGAACAGAAAAAAAGTCCTACCACACACAGAAGCTTCAACTTGTGCAA GCGCTACTGTACCGCACAGGAGCTTTCGCGGCAAGCAAACCATCGCCACC TGAGAACGGACCAACAAGCCTACCTCAAACGCCACCATTTCCCACCAAGG ATACCGCCAATTCTTGGGGGTGCCATCAAAACTGCTCCACTGTAACAACG AAAGTACGCTGTCCGCGGCCACCTGGGCGACCTGCAGCGGCTGTACAGCG GCCAGCTGCACCCGCGGGAACTAGGATGCCTGGACATCGTGCACAACTAC AACGGCGTGTGCCTTCATGCTGGACTACGTGCCCCGCCATAACACCGGGG ATAGAAAACGAAATCCGAAGGCAGGGATTCCGGCACCTGGTTCCAGAGAA ACCTGATACGTCCGCCCCCGCAGACCCTGCGCAGTTGTACCGAGAGAAAA CAAAAAACGTCAATGCCAAACCGCCAAACCACCTGTGGTAATCTCTGAAC AGACGCGGAGCATGCCATCAGGTCTGAGTGTACCGGACTTGACTCGATCC TTGCTCCCCCTCCCCCCCCTCCGAATCAAGACAAATTGTTCCAGCACCTG CTCGTCGACGTAGCTCGTCTCTTCCGAAATGCGCACGGGACTGAGGCCTG GCACACGCTGCGCGCCCGTCCACCTTGCCCGAGTGTTACGACTTCTTCCT GCTGCGGGATGAGCCTCCATGAGCCGGAGATCCTCAGAAACATTTTCGAG CGTGGAGACGCCCGTCTCTTCCGCTCGCGCTGTGCAAGCACGCCTCTGGG GGTGGTCCAGGCGATGCCGCCCGGGAGAGTTGTTCGCCTCCGCGCCTCAT GATGGTTCTGAGGATCTTCTGCGGCTCATGGAGGACCATTCCTGATGTAG TAAAAGTCGTGACACTTTGGACAAGTGGGCGCGGAGCGTGTCCCAGTCCT CCGTCTCATGCGGGACAGGCGAATTTCGGAGAGATCGAGCTTCTCTGACG AGCATGTGCTGGGAACATTTGTCTTGTTTCGGGGGAGGGGGGAGGGCAGG AGTGGCAAGGATGATATGTTTTCAGTATGATATGACAGACTGTTATCTGG GCCGGGGGCGAAGTTTTCGTCGACAAACCGTCAAGTTGTATCCAATGCGC AAGTCAACGAAGACGACAGACAGTGATGCGTGTGCGTGCACTCTTGTCGG CGTGGCGTACGCAGTAGGCCATACATCTGTCCGTTCGTTTGGATTTCATG CGGGCCCGTACAGTACGGCAGGCGTCTCTTGAGTGTGCCGCTCTACCCCT GCCGGCTCCATCTTGCCTATCGATCAACCATGAAGATGGCCAACAAGACG GTCAACAGCATGGTTTAAAGACAAATACCTCCGAACAACACCCCGCAATG ATTATTCTGCCGGCTCCATCTTGCATGTCGATCGACAAACAACACGGTCA ACGCTCTTGCCAACTACAACAACAACAACACCAACACCTCGAAATCGTTC GTACGTCATCGGCAGGCACGCCTTCCAGTCTCTGGTGTGGAACCTCGCAG CCTCGGAGCGCATCAAGCTTTACGGCCGCGAGGGCGTCGTGGAAGGCGAC CTCGTGTTCCCGAAGGACTCCGCTGCGGTCTTGGACGATAACGACGAACC TGTTGTAGAACTGGCCAACGCCGCCAGCGAGGCTTCGGCGGACGTCGAGG GGGAGGACGCAGATGCAGGGGGAGAAGGGGAGCCTCAGGGGAAGCGAGCC AAGACTGGTGGAGCTCCTCTGCCTCCTGTGCATGCTGTGACCAAGGAGGA CGTGGAGCAGGGGACCTTCCAGATGACCGACGTGGTCCTGCCGATGCCGG GGTAAGAATCGACGTGCAGGCATGTAACCGCCACGTATTTGAGACGACCG ACGCATGAGTACTTGGTGATCCCTCCTGGGTTTATCTGGCTCATGAGTAG GAACCTCTTTTTCGTGCAATGTCTCATCGCAACTGACACACCCACAGCAA CGTGTAAGCGGCACAAACCTTTCATGTTTGTCGTTCGCGTCCGCTCTTAT TCACGTTTGTTCTCAATTATTTCCAGGTCTGGGGTAACGTACCCTTCGAA CGGTGTCGGGGAGTGCTACACCAAGGCGTTGGAGGAGAGGGGACTCACCG AGGCATGTTTCAACACATCCACGCAAAAGTCCTTCAACCTTGGAGGCGCT TACCGCAGGTAAAATGAGTGCCTGGTATAATTTTGCAATGTAAGGATCCA GGGACGACAGAATGTTGACAGGCACATATTTTGGAAAATAGCGAAGGGTC CCTGACAATCGCACACTGGGTACCTCACACCAGTAGGAAGGCGCCAGGAA AGAGAAAAACTGTTGGTCATCGCACACAGCAGCGGTAGGGGCTTCTCTTT ACATGCTTATCACATGTCTACCTCCAATTTCCTTCATAGGTATCAAGATA AATTTTCCAACCACTCTAAAATCAAGTCAAAATAGCTTATTTTGATCAGG CTCTAAGAAGCTCAGTTGTGCTAGGAGTATTCCCTGAAGTTTTTAAATCA GTAGGGCGTACTATGGAGCAGCTACGTGCGTGTCGGCACGTCCAGACATG CTGCTGGGGCCGAGATATCGAAGGCTGCAGCAGTGGCTCAAAAAGTCCGC AAACTGCGGCCGAACTGGACCGACACCAAAAGCCTGTCACTGCTGTACTC GCCGCCATAGACCGTCCATGGCGGCGAGCACAGCAGTGACAAACCTTTGG TGTCGGTCCAGTTCAGGCCAGTTTGCAGACTTTTTGAGGTTTTGCTGCAG CCTTCGATATCTCAGCCCCGGCAGCATGTCTCGACGTGCCGACACACACA TAGCTGCTCCATTGTGTCCTCTACTGATTTTAGTACTTCAGGGAATTCTC CTTGCACAGCTGACGGAGTGAGAGGTTAACCCGATTAAGCTCCTTTGACT TGATTAAAGACTGAGATATATCCTTTGGATCCAAACAAGTTTTTTTGGTA AGGATTTTTTTACTGCCCTTGTCAGTCGGCCCTTCATGCCTCAAAGGGGT GTACTTGTATCGCACATATTTAGCAGGTGCGGGGTTTGCCTTTGCCAGCG ATTTACCACGCTTCCTCCAACTTTGCGATAAAAACGTGTTGGCCACCTTG ACGTGGTCAAAAAGCATTATGGGGCTGTTGGAAAGGGCTGGGTCCTTTGC GATACCGCCACGTACTGCTGTCAAATGCCTGTGGCGTACTGTATTGCGTG CGCGCGTTCTTGCTTGCTTGCTTGCGCTATTCATTCATTATTTTCTTGGT GAAGAATTGATCTCGGCCTGTCGACCTTGGCGGATATCGTTGCGTTTGAA GATGGAATGCTCGGTTTCGTTTGTCTCGGACATAGATGTCTTCTTCGCGT GGTACCCAGATGTCGCGTAGACGCGGTCGCGTCCATTTTCATCCCTGTTA TTTTTTCCCCGTCTCGTACCTTCACGCGCACTGATCTCCTACCGCCGACT GATTTGCCCCTTGCTTCGGGGCGCGCTGTACTAGTACACTATTATTTCGC TTGCACTCCTTCTCGAACTGATATGTTCTGTTTCCTTTTTTGGCCTCTTG TTTTTTGGCTTGTTTTCGTTTGCTTTCTTTTCGAGTCTATATTTCTCTTT TTTTTTGTACTTCGAAGTATATGGCATTGGCCACAAGAGAAGGTACAAGA TACCCTGTGTGTGGACGGCATCTATTCCAGCAGTATGCATAATTTTCTCT TCTCTCGGGCATAACCTTGTTATCATTATCAGTTAATTTATCTTTTTTCG TCCCAGCACGATATGTGCCTGGTTTGTGACCACGGGCGAGACGTGACCGT GAGCACATGTGAGGATCAACAACAACAACAACACAACAAATCTATGGTGC GTCGTGACTTTCGCAGACTGCTGCAGGTGCCCAAGGACATGCAGTGGGAG ATGAAGCGATACGATGACCACACTCTGCACCTCATCAACACCGACATCGA CGACCTGTTGGACATCGACGACGCTAGAATCGCCAAGGAAAACGCCGAAA AGAAAAAGCAAGAAGAAGATGCTGCTGCTGCTGCTGCTGCTGCTCCTGCT GCTGCTGCTGCTCCTGCTCCTGCTGCTCCTGCTGAAACGAACAAGACGGA CCTTGGTCAACAGGAACAACCTCCATCAGTGAAAGAAGGCGAGGCGGGAG ACGGAAAGCCGGCCTCCGATGCGATGGACGTCGTTGATGCAACTGCCGAG GTCAAGCCTTCGGCAGAGTCGAAGGGCCGTTTCCACGCCCTGTGTCTCCA TTTTACGCTCCCCTCCGCAGCCTACGCCACCATGTGCCTGAGGGAGATCA CGCAGCAGGATACCAGCACCAGCTTCCACACCAGCCTGAACACTTTGGCA CCCGGCCAGCACCCTGCCAAGGGAGCTGCTTCTGTAGAAGGCGGGGCTAC TGCGGCCGACGTCGAGGCGGGGGGGACTGGTGCAGAGGCCGGAGGAGGAG ATAAGGGTGATGCGAATGCATCAACTCCGAAGGGGGCGGTGATCAAGATT GGGTCCAGCTTCAAATAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig191:244214..256781-

>mRNA_P-littoralis_Contig191.73.11 ID=mRNA_P-littoralis_Contig191.73.11|Name=mRNA_P-littoralis_Contig191.73.11|organism=Pylaiella littoralis U1_48|type=CDS|length=3438bp|location=Sequence derived from alignment at P-littoralis_Contig191:244214..256781- (Pylaiella littoralis U1_48)
GGCGGTGGTGGTGGCGGTGGCGGCCGAAGGGGGGGCAGAGGAGGGGGAGG
AAGAGGTGGTTGGAGAGGTGGTAATCGAGGTGGCGGGGGTGGTAGATGGG
GCAGGGGAGGAGGACGGGGCGGCGGTGGCGGGAGAGGCCGAGGAGGGGGT
GGCGCAGACTGGAATGACCGCAGGCCGGCCGAGCCCACAGCGGAGACCCT
GGCGCTGATGGGCACACGGGCCACAGAGTCAACTGTTGGCATCACGCACT
TCATGACGGAGAGCGACACGGGCTTCTCGGGGGTGCTGAAGCAGCGCTAC
TCCGATTTCGTCGTTCACGAGGTTGATCCAGATGGAAACGTTTGCAAGGG
CACGGACTTTCCGGGGCTCCTACGGCCCATCGAACACGATCGGCAATCGG
CATCCTCGCATTCTTCCGTTGAACCGCAACCTGCTGCTGCTGCTGCTGCT
GCCGTAGCTTCATCTTCGAATGAGTCGGTGCCACCGAGCGAGGCTGCCTC
GACCACAAAGGAGGGTGCTGGAGAGGACAACAAGAATAGTGCAGAGGGCA
AGGGAGAGAAGGGCAAGGAGGAGGGAGGAGGCACACAGGAGGAGGAAGAG
AAGAAGGAGGAGGAGGACGAGGATGCGAAGCGCGAAAGACTGGAAGAGGA
GGAGAAGGCTAGGGAGAAGGAAGAGGAAGAAGAGCTGAAGACACTTATCA
AGAGCGGGGCTCAGAGTCTTATTCCTGTGGTTGGGGAGGAGGTGACCGCC
AAGGTGGAGGCGTTCGTGCTGGAAGGCATCAGCATCAGGGGCAGAGACCA
GCGGACCTTGACGCTACCGACAACCGACAAGACCATCCGGACGAAGGTGT
ACGGCCTCCTGAAGCAAAACCTCAGCAAGTACTTGCTGGCGGTTACCGTG
GACGACCCCGCCTCGATCCCGATCCCGCCTCCGAAAACAGAAACCGAAAC
CGAAGTCAAAACCGAAATTAAAATCGACACCGCCGTGACTAAGGCTTCCG
ATGGTGATGGAACTCCCCCCGAGGGTGCCGCTGCTGCCGAAGCTACAGAG
TCAACCGTTGGGAACGGCAGCAGTGACACTGGCGGTGGCGGTGGCGGTGG
CGGTGACGACGCCAAAAAGCACCCCTCCGAAGGTAAGCCCGTAGAAAAGC
AAAACGGAGATGCGGCGCCAGGCCAGGCTGCTGAAGCGGCCGCTGTCAAG
AAGCCGGACCCGAATGGACCCAAGTGCGTGCAGCTCAAGATGAAGCCCGA
CTGGCGCAGAGCCGGGGGAGGAAGAAAGCGCAGAAGGGGAGATCTGGACC
ATGGCGGGGCGGGGGGGGGCAGGGGTGGCGGAGGGCGCTGGGCGTGGCCC
GAGGGTCGCCCCGAATTCTGCCGCTTTATCCTATACAAAGAGAACAACGA
CACGATGGGAGCGGTCAGTCGCATGTGCAAGCATCTCCGTTTTTCGAGCA
AGGTGGTTGGGTACGCGGGCACGAAGGACAAGCGGGGTGTAACGTCGCAG
TGGTGCACGGTCAAGAGAAAGTCCATCGAGGAGCTCAGGACCTTCAACCG
TCCTCTCGGCGCCTTCCAGGGGTCGATCGTCCTCCTGGGAAACTTCTCCT
ACGTGGAGGAGCCGCTAAAGCTGGGAAATCTCTCCGGAAACCGCTTCGGC
ATCGTCCTCAGAAACCTCACCCTACCGGGGGCTTCTGGCAGCAACAGCAA
CAGTACCGGGAACGGCCGAGGAGCCGCCGCCCCCCGCACCGAGAACGGTG
CCGGAAGTGGTGCTGTTAACCCTGAGGGAGGCGTATCTACCGCCGGGGAG
GAAGTAACGAAGAACGGTTCCGACGATGCTGCTGATGCAGATGCTGATGC
AGATGCTGATGCTGATGCTGCCGCTACCGCTGCTGCTGCCGCTACCGCTG
CTGCTGCAGCGGAGGCGGAGGCGGAGGCGGCGGTGGTCGAAGCGGGTGCG
AAGCTCGAAGAAACGGTCGAACGGCGCTGCACGTGGGTGAAGGAGCGAGG
GTTCATCAACTACTTCGGCCTTCAGCGGTTCGGGTCTGGGGGGGCGCCGA
CGAGCGAGGTGGGGCTGGCCATGCTCAAGGAGGACTGGGCGGGGGCGGTG
AGGCTCATCATGACGCCGAGGCTCGGCGAGAACGAAGCTACGCACGAGAG
CAAGGTACACTTCCTTAAGCACCCGACGGACATCAAGGGAACTTTGAGCA
AGCTGCCATTCTTCATGGATGCCGAGAAGAGCATGATGCAGGCCCTGCTC
AGAGGAGGCCCGAACGCGCACGTCGACGCCCTGAAAGCCGTGCCCAAGAA
CCTTCAGCTCATGTACCTGCACGCCTTCCAGTCTCTGGTGTGGAACCTCG
CAGCCTCGGAGCGCATCAAGCTTTACGGCCGCGAGGGCGTCGTGGAAGGC
GACCTCGTGTTCCCGAAGGACTCCGCTGCGGTCTTGGACGATAACGACGA
ACCTGTTGTAGAACTGGCCAACGCCGCCAGCGAGGCTTCGGCGGACGTCG
AGGGGGAGGACGCAGATGCAGGGGGAGAAGGGGAGCCTCAGGGGAAGCGA
GCCAAGACTGGTGGAGCTCCTCTGCCTCCTGTGCATGCTGTGACCAAGGA
GGACGTGGAGCAGGGGACCTTCCAGATGACCGACGTGGTCCTGCCGATGC
CGGGGTCTGGGGTAACGTACCCTTCGAACGGTGTCGGGGAGTGCTACACC
AAGGCGTTGGAGGAGAGGGGACTCACCGAGGCATGTTTCAACACATCCAC
GCAAAAGTCCTTCAACCTTGGAGGCGCTTACCGCAGACTGCTGCAGGTGC
CCAAGGACATGCAGTGGGAGATGAAGCGATACGATGACCACACTCTGCAC
CTCATCAACACCGACATCGACGACCTGTTGGACATCGACGACGCTAGAAT
CGCCAAGGAAAACGCCGAAAAGAAAAAGCAAGAAGAAGATGCTGCTGCTG
CTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTCCTGCTCCTGCTGCTCCT
GCTGAAACGAACAAGACGGACCTTGGTCAACAGGAACAACCTCCATCAGT
GAAAGAAGGCGAGGCGGGAGACGGAAAGCCGGCCTCCGATGCGATGGACG
TCGTTGATGCAACTGCCGAGGTCAAGCCTTCGGCAGAGTCGAAGGGCCGT
TTCCACGCCCTGTGTCTCCATTTTACGCTCCCCTCCGCAGCCTACGCCAC
CATGTGCCTGAGGGAGATCACGCAGCAGGATACCAGCACCAGCTTCCACA
CCAGCCTGAACACTTTGGCACCCGGCCAGCACCCTGCCAAGGGAGCTGCT
TCTGTAGAAGGCGGGGCTACTGCGGCCGACGTCGAGGCGGGGGGGACTGG
TGCAGAGGCCGGAGGAGGAGATAAGGGTGATGCGAATGCATCAACTCCGA
AGGGGGCGGTGATCAAGATTGGGTCCAGCTTCAAATAG
back to top