mRNA_P-littoralis_Contig191.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.71.1
Unique NamemRNA_P-littoralis_Contig191.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig191.71.1 vs. uniprot
Match: D7G806_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G806_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 8.870e-26
Identity = 77/176 (43.75%), Postives = 99/176 (56.25%), Query Frame = 1 
Query: 2362 SEENPPREHPVFRFSEPSPSG-----LGDLGTKVPRGKKLWDGDDGQGFTLPPLSPIDIDTDRDETWPGMGGEKKPDALVARGSDGGAGGWWDAWGRESAATARDKTIRWARVAADRGGAVATEAIDICLARIMKTWHETFEPRTENMRRRLEETANFCLSEVGVHLEDPVLAEAL 2874
            S E+ PR  PVFRFSEP  +G     +G  G + PR +   D +D     LPPL P+D  +      P         A+V    + G    W+AW  E A   R  ++RWA VAA+RGG +A E ++ C A+++K+WHET +P     RRRLE TANFCL EVG HLED V AEAL
Sbjct:  224 SGEDFPRRRPVFRFSEPLSAGPDPVDVGLAGQRPPRRRHTADVED--FVVLPPLPPLDSIS----AEPPGEAIDPAGAMVGYSEENG----WEAWAAELAVALRKASVRWAGVAAERGGVLAEELLEACKAQVVKSWHETVQPLAGYARRRLEATANFCLGEVGQHLEDAVTAEAL 389
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BLAST of mRNA_P-littoralis_Contig191.71.1 vs. uniprot
Match: A0A6H5KHW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW6_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 5.560e-25
Identity = 77/172 (44.77%), Postives = 99/172 (57.56%), Query Frame = 1 
Query: 2377 PREHPVFRFSEPSPSG-----LGDLGTKVPRGKKLWDGDDGQGFTLPPLSPID-IDTDRDETWPGMGGEKKPDALVARGSDGGAGGWWDAWGRESAATARDKTIRWARVAADRGGAVATEAIDICLARIMKTWHETFEPRTENMRRRLEETANFCLSEVGVHLEDPVLAEAL 2874
            PR  PVFRFSEP  +G     +G  G + PR +   D +D     LPPL  +D I T+        GG     A+VA   + G    W+AW  ES    R   +RWA VAA+RGG +A E +++C A+++K+WH+T +P     RRRLE TANFCL EVG HLED V AEAL
Sbjct:  732 PRRRPVFRFSEPLSAGPDPVDVGLAGQRPPRRRHTADVED--FVVLPPLPQLDSISTEPPGEASDPGG-----AMVAYSEENG----WEAWAAESTVALRKAAVRWAGVAAERGGVLAEEFLEVCKAQVVKSWHDTVQPLAGYARRRLEATANFCLGEVGQHLEDAVTAEAL 892
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G806_ECTSI8.870e-2643.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHW6_9PHAE5.560e-2544.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:239016..242488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3473
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009690.1
Cds size2745
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789920.1323714-UTR-P-littoralis_Contig191:239015..2396111680789920.1323714-UTR-P-littoralis_Contig191:239015..239611Pylaiella littoralis U1_48UTRP-littoralis_Contig191 239016..239611 -
1680789920.1540866-UTR-P-littoralis_Contig191:242356..2424881680789920.1540866-UTR-P-littoralis_Contig191:242356..242488Pylaiella littoralis U1_48UTRP-littoralis_Contig191 242357..242488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789920.144119-CDS-P-littoralis_Contig191:239611..2423561680789920.144119-CDS-P-littoralis_Contig191:239611..242356Pylaiella littoralis U1_48CDSP-littoralis_Contig191 239612..242356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.71.1prot_P-littoralis_Contig191.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 239612..242356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.71.1

>prot_P-littoralis_Contig191.71.1 ID=prot_P-littoralis_Contig191.71.1|Name=mRNA_P-littoralis_Contig191.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=915bp
MSNRSRGGSVRLCYLAAAAAAAAGLLDQKATASLQQEDDVIEVVTLGAMQ
PPLPGQRKRPFGRGGGLDGRRKQAPSSPGKDESPDETIDRLLRSMFERES
QQFLDGEGERGDSRDPDVFPASASGSASAAAAAASASSAEYQRTVRTTNQ
RDALLEEEEEERNDVPASLDVAEVGQHQQRHDHRQQHAMLGELSDPSPSD
VGPSPEKVLEGLGSDIRDETDDGAAPALDLGLPAAAEESKLVPDERDVGE
SGEEASDGTPAAALERASAGDDAVLKTAAETSRESVVDSPGDHEVQHVVA
AAVGGGGSDTMEMAEVEKEVLRELEMDLGQDPDGGREKPVNVVNEEGGQG
GGVVGIGTSASDDLAGEMTVGAPGTAGEFLVNDGDGSDITDKARPPPPDE
VGAAATDVAAVGEQGVVAVELEDGADGRGYGTAPSMVAGDVDEHFSAVVD
ASVEEDAPPVPRHDDKVAVKVVDADVAEKLSVDSETLAGTGAFAGEDGSA
NLDEIVGAPPADAAGEGLDGEAGVAPKSEDRVMAVDTAGVDASFGSATLA
EIHDDEADGGFGAGEEDAVPPGGVILARTSSESNGEEDGEGGSAEKGASV
GVSESVKVSLGAGADDDASVVRIGVAAGVAAGVAAAAAAAAADAVAVGDA
DVKGEDEVGLAGKFRTEDAAPTGERTASERSGTDARPPKEEQQTPAQQHG
GAADMASMAANPPADDDSRTAEPNVSPALRKEAADNRPPAMDTSEENPPR
EHPVFRFSEPSPSGLGDLGTKVPRGKKLWDGDDGQGFTLPPLSPIDIDTD
RDETWPGMGGEKKPDALVARGSDGGAGGWWDAWGRESAATARDKTIRWAR
VAADRGGAVATEAIDICLARIMKTWHETFEPRTENMRRRLEETANFCLSE
VGVHLEDPVLAEAL*
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mRNA from alignment at P-littoralis_Contig191:239016..242488-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.71.1 ID=mRNA_P-littoralis_Contig191.71.1|Name=mRNA_P-littoralis_Contig191.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3473bp|location=Sequence derived from alignment at P-littoralis_Contig191:239016..242488- (Pylaiella littoralis U1_48)
CATGGACCCGACGCAGCCTTTTACTTGACCTCTACGTGCTTGAACAACAC
TCTTTCTGCCGCCCTGTTGCTGTCCTTGGAAGGTCCTACTACGTCGGGGG
CTGCGGGCTCGATTGTTAGGTCTACGAATACCATGTCCAACCGATCCCGA
GGCGGCAGCGTGCGGCTGTGCTACCTTGCTGCTGCCGCTGCTGCTGCTGC
GGGGCTACTGGACCAAAAAGCAACCGCTTCTCTTCAACAAGAGGATGATG
TAATCGAAGTCGTAACCCTTGGTGCCATGCAGCCCCCTCTCCCCGGTCAA
AGGAAGCGTCCCTTTGGCCGCGGTGGTGGACTTGATGGGCGACGAAAACA
GGCGCCCTCTTCTCCTGGCAAAGACGAGAGCCCTGACGAAACGATAGATA
GACTTTTGCGAAGCATGTTCGAACGAGAGAGCCAACAGTTTCTTGACGGC
GAAGGTGAACGTGGTGACAGTCGTGATCCCGACGTGTTCCCCGCCTCTGC
TTCTGGCTCTGCTTCTGCTGCTGCTGCTGCTGCCTCTGCTTCTTCTGCTG
AGTATCAGCGTACAGTGCGAACCACGAACCAACGTGACGCACTTCTGGAG
GAGGAGGAAGAGGAGCGGAATGATGTTCCAGCCAGCTTGGATGTGGCCGA
GGTTGGGCAACACCAACAGCGGCATGACCACCGCCAGCAGCACGCAATGC
TAGGAGAATTAAGTGATCCGTCTCCAAGTGATGTTGGCCCATCCCCTGAA
AAAGTTTTAGAAGGCTTGGGCAGCGATATCAGGGATGAAACTGATGACGG
GGCGGCGCCAGCGCTTGACTTAGGTCTACCGGCAGCCGCCGAAGAATCGA
AACTAGTTCCAGATGAGCGAGACGTGGGCGAAAGCGGCGAAGAGGCCAGC
GACGGTACTCCTGCTGCTGCTTTGGAACGGGCCAGTGCTGGAGATGATGC
TGTACTGAAAACTGCGGCTGAGACATCCCGCGAGAGTGTCGTGGACTCAC
CGGGTGATCACGAGGTTCAACATGTTGTAGCGGCGGCGGTGGGCGGTGGA
GGAAGCGACACTATGGAAATGGCGGAGGTGGAGAAGGAGGTGTTGCGCGA
GCTGGAGATGGATTTGGGGCAAGATCCCGACGGAGGAAGAGAGAAACCCG
TGAACGTTGTAAATGAGGAGGGGGGACAGGGGGGGGGGGTAGTCGGTATT
GGTACTAGCGCATCCGACGACCTTGCTGGAGAGATGACGGTCGGCGCCCC
CGGTACTGCGGGAGAATTTCTAGTTAATGATGGAGACGGTTCAGACATCA
CGGACAAGGCTAGACCCCCCCCCCCTGACGAAGTTGGCGCTGCCGCCACG
GACGTGGCAGCAGTAGGGGAGCAGGGAGTGGTGGCGGTTGAGCTGGAGGA
CGGCGCCGATGGCAGGGGCTACGGTACGGCACCCAGCATGGTCGCAGGTG
ATGTCGATGAACATTTTAGTGCTGTAGTGGATGCATCAGTAGAGGAGGAT
GCACCACCCGTGCCACGACATGATGACAAGGTCGCCGTGAAGGTGGTAGA
CGCAGACGTCGCCGAGAAGTTAAGCGTTGATTCGGAAACGTTGGCTGGCA
CTGGGGCTTTTGCTGGCGAGGACGGGTCGGCCAATTTGGACGAAATAGTT
GGCGCGCCACCGGCTGATGCCGCCGGAGAGGGGCTTGACGGAGAGGCCGG
GGTGGCTCCGAAGTCAGAAGATAGGGTTATGGCAGTCGACACCGCTGGTG
TTGATGCATCTTTTGGGTCGGCGACATTGGCAGAAATTCACGACGACGAA
GCTGATGGAGGTTTCGGGGCGGGGGAAGAAGACGCAGTTCCTCCGGGGGG
CGTTATCCTTGCGAGGACCAGTTCGGAGAGCAACGGAGAGGAGGACGGAG
AGGGTGGTAGTGCTGAGAAAGGAGCAAGCGTGGGCGTGTCAGAATCTGTT
AAAGTGTCGCTAGGGGCCGGTGCTGACGACGATGCCTCTGTTGTTCGTAT
AGGTGTTGCTGCTGGTGTTGCCGCCGGTGTTGCTGCTGCCGCTGCTGCTG
CTGCTGCTGATGCCGTTGCGGTTGGTGATGCCGACGTGAAAGGAGAAGAT
GAAGTCGGGTTGGCGGGCAAGTTTAGGACCGAAGACGCGGCGCCGACCGG
AGAACGAACGGCGAGCGAACGAAGCGGAACCGACGCAAGGCCGCCGAAGG
AAGAGCAACAGACTCCTGCACAGCAGCATGGGGGAGCAGCCGATATGGCC
AGCATGGCCGCCAACCCGCCTGCCGACGACGACTCCAGAACGGCAGAACC
AAATGTTTCACCAGCATTGCGAAAAGAAGCAGCAGACAACCGGCCGCCGG
CGATGGACACGAGTGAGGAGAACCCTCCTCGTGAACACCCTGTGTTTCGC
TTTTCGGAACCGTCACCGTCAGGGCTTGGCGATCTCGGCACCAAGGTGCC
GCGAGGAAAAAAACTGTGGGACGGCGACGACGGCCAAGGATTTACCTTGC
CCCCTCTATCGCCGATCGATATCGACACCGACCGCGACGAGACGTGGCCG
GGAATGGGCGGTGAGAAAAAACCGGACGCTCTCGTTGCGCGCGGTAGCGA
TGGCGGAGCGGGTGGATGGTGGGACGCGTGGGGGAGAGAGTCGGCGGCGA
CCGCAAGAGACAAAACAATACGCTGGGCGAGGGTGGCAGCCGACCGGGGG
GGCGCCGTAGCAACCGAAGCGATCGACATATGTCTGGCGCGAATTATGAA
AACCTGGCACGAGACTTTCGAGCCGCGAACCGAAAACATGCGACGGCGTC
TGGAGGAAACGGCAAACTTCTGCTTGTCGGAAGTGGGCGTGCATCTCGAG
GATCCGGTGTTGGCGGAAGCACTGTAGACTCTTCCCAACCCCCCTCCGCC
CCTCCCGCAAGAAGTAGGTGGCTGCTTTTTTTTCGTGGGTCTCCATTAGA
AAACGTTTTGTGCGTTCGTTCCTTGACTGCCGGTGTGAAGTATTTTAGTG
CTGGTCTGAATACAGCCGTGTAACAGGCGTGTAATGTTTGTCGTGTTGAA
ATGTAGTTCTGCAGCAGTGGCTGCTCCCACCATCATCGTTCGGCCGCGGT
TGCTGTGGGGAATCTTGTGTTGGTTTCTGTGTATCTGAAGTGGTGTTTCG
CGTTGAGCATGTAGAAGAGTGTTGAAAGGGATGCGTACGTCATTATACAC
CGGCGACCTTCGCGCCCGCGACTTGACGCATGGAAAGTGCGATGCACACT
GGGAAAAAATGAAGTTGAGGCACGCCGTGTGTAGCATAACAAGGCCGGAG
CGCCATGAGATTCACGAGAACGGCGATATTTTTCAGCACGAAAACCTTCC
CGGAAAAAATCTACTTCGTAGTTTGTTGCGCTGACTTTGTTCGGTGCTGT
CATTGTATTCGCAGTTGTTGCAGTCAAAATCTCCACCCGACTCCTTCGTG
CACTGCCGTGGCATAGACTTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:239016..242488-

>mRNA_P-littoralis_Contig191.71.1 ID=mRNA_P-littoralis_Contig191.71.1|Name=mRNA_P-littoralis_Contig191.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2745bp|location=Sequence derived from alignment at P-littoralis_Contig191:239016..242488- (Pylaiella littoralis U1_48)
ATGTCCAACCGATCCCGAGGCGGCAGCGTGCGGCTGTGCTACCTTGCTGC
TGCCGCTGCTGCTGCTGCGGGGCTACTGGACCAAAAAGCAACCGCTTCTC
TTCAACAAGAGGATGATGTAATCGAAGTCGTAACCCTTGGTGCCATGCAG
CCCCCTCTCCCCGGTCAAAGGAAGCGTCCCTTTGGCCGCGGTGGTGGACT
TGATGGGCGACGAAAACAGGCGCCCTCTTCTCCTGGCAAAGACGAGAGCC
CTGACGAAACGATAGATAGACTTTTGCGAAGCATGTTCGAACGAGAGAGC
CAACAGTTTCTTGACGGCGAAGGTGAACGTGGTGACAGTCGTGATCCCGA
CGTGTTCCCCGCCTCTGCTTCTGGCTCTGCTTCTGCTGCTGCTGCTGCTG
CCTCTGCTTCTTCTGCTGAGTATCAGCGTACAGTGCGAACCACGAACCAA
CGTGACGCACTTCTGGAGGAGGAGGAAGAGGAGCGGAATGATGTTCCAGC
CAGCTTGGATGTGGCCGAGGTTGGGCAACACCAACAGCGGCATGACCACC
GCCAGCAGCACGCAATGCTAGGAGAATTAAGTGATCCGTCTCCAAGTGAT
GTTGGCCCATCCCCTGAAAAAGTTTTAGAAGGCTTGGGCAGCGATATCAG
GGATGAAACTGATGACGGGGCGGCGCCAGCGCTTGACTTAGGTCTACCGG
CAGCCGCCGAAGAATCGAAACTAGTTCCAGATGAGCGAGACGTGGGCGAA
AGCGGCGAAGAGGCCAGCGACGGTACTCCTGCTGCTGCTTTGGAACGGGC
CAGTGCTGGAGATGATGCTGTACTGAAAACTGCGGCTGAGACATCCCGCG
AGAGTGTCGTGGACTCACCGGGTGATCACGAGGTTCAACATGTTGTAGCG
GCGGCGGTGGGCGGTGGAGGAAGCGACACTATGGAAATGGCGGAGGTGGA
GAAGGAGGTGTTGCGCGAGCTGGAGATGGATTTGGGGCAAGATCCCGACG
GAGGAAGAGAGAAACCCGTGAACGTTGTAAATGAGGAGGGGGGACAGGGG
GGGGGGGTAGTCGGTATTGGTACTAGCGCATCCGACGACCTTGCTGGAGA
GATGACGGTCGGCGCCCCCGGTACTGCGGGAGAATTTCTAGTTAATGATG
GAGACGGTTCAGACATCACGGACAAGGCTAGACCCCCCCCCCCTGACGAA
GTTGGCGCTGCCGCCACGGACGTGGCAGCAGTAGGGGAGCAGGGAGTGGT
GGCGGTTGAGCTGGAGGACGGCGCCGATGGCAGGGGCTACGGTACGGCAC
CCAGCATGGTCGCAGGTGATGTCGATGAACATTTTAGTGCTGTAGTGGAT
GCATCAGTAGAGGAGGATGCACCACCCGTGCCACGACATGATGACAAGGT
CGCCGTGAAGGTGGTAGACGCAGACGTCGCCGAGAAGTTAAGCGTTGATT
CGGAAACGTTGGCTGGCACTGGGGCTTTTGCTGGCGAGGACGGGTCGGCC
AATTTGGACGAAATAGTTGGCGCGCCACCGGCTGATGCCGCCGGAGAGGG
GCTTGACGGAGAGGCCGGGGTGGCTCCGAAGTCAGAAGATAGGGTTATGG
CAGTCGACACCGCTGGTGTTGATGCATCTTTTGGGTCGGCGACATTGGCA
GAAATTCACGACGACGAAGCTGATGGAGGTTTCGGGGCGGGGGAAGAAGA
CGCAGTTCCTCCGGGGGGCGTTATCCTTGCGAGGACCAGTTCGGAGAGCA
ACGGAGAGGAGGACGGAGAGGGTGGTAGTGCTGAGAAAGGAGCAAGCGTG
GGCGTGTCAGAATCTGTTAAAGTGTCGCTAGGGGCCGGTGCTGACGACGA
TGCCTCTGTTGTTCGTATAGGTGTTGCTGCTGGTGTTGCCGCCGGTGTTG
CTGCTGCCGCTGCTGCTGCTGCTGCTGATGCCGTTGCGGTTGGTGATGCC
GACGTGAAAGGAGAAGATGAAGTCGGGTTGGCGGGCAAGTTTAGGACCGA
AGACGCGGCGCCGACCGGAGAACGAACGGCGAGCGAACGAAGCGGAACCG
ACGCAAGGCCGCCGAAGGAAGAGCAACAGACTCCTGCACAGCAGCATGGG
GGAGCAGCCGATATGGCCAGCATGGCCGCCAACCCGCCTGCCGACGACGA
CTCCAGAACGGCAGAACCAAATGTTTCACCAGCATTGCGAAAAGAAGCAG
CAGACAACCGGCCGCCGGCGATGGACACGAGTGAGGAGAACCCTCCTCGT
GAACACCCTGTGTTTCGCTTTTCGGAACCGTCACCGTCAGGGCTTGGCGA
TCTCGGCACCAAGGTGCCGCGAGGAAAAAAACTGTGGGACGGCGACGACG
GCCAAGGATTTACCTTGCCCCCTCTATCGCCGATCGATATCGACACCGAC
CGCGACGAGACGTGGCCGGGAATGGGCGGTGAGAAAAAACCGGACGCTCT
CGTTGCGCGCGGTAGCGATGGCGGAGCGGGTGGATGGTGGGACGCGTGGG
GGAGAGAGTCGGCGGCGACCGCAAGAGACAAAACAATACGCTGGGCGAGG
GTGGCAGCCGACCGGGGGGGCGCCGTAGCAACCGAAGCGATCGACATATG
TCTGGCGCGAATTATGAAAACCTGGCACGAGACTTTCGAGCCGCGAACCG
AAAACATGCGACGGCGTCTGGAGGAAACGGCAAACTTCTGCTTGTCGGAA
GTGGGCGTGCATCTCGAGGATCCGGTGTTGGCGGAAGCACTGTAG
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