mRNA_P-littoralis_Contig191.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.58.1
Unique NamemRNA_P-littoralis_Contig191.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig191.58.1 vs. uniprot
Match: D7G809_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G809_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.300e-55
Identity = 96/123 (78.05%), Postives = 104/123 (84.55%), Query Frame = 2 
Query:  182 MAGKKNYSYTNLADTPQHGEIIESSYLLGEKGPKSTWTKVLEMAVLLATIGGCAYLFLFLFHNGNHH-TAPAKESASHPQPPVGASSSTLLDPASCHKNPKC--LELDGLCCPDDKGDYLSCC 541
            M  KKNYSYTNLADTPQHGEIIESSYLL EKGPKS WTKVLEM VL+ATIGGCAYL +FLFH+ NHH +A AK+SASHP PPVGASSST  DPASC+ N KC  LEL+G CCP  KGDYL+CC
Sbjct:    1 MPPKKNYSYTNLADTPQHGEIIESSYLLAEKGPKSIWTKVLEMVVLVATIGGCAYLVVFLFHHANHHDSATAKDSASHPHPPVGASSSTSQDPASCNSNSKCAELELNGFCCPTAKGDYLACC 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G809_ECTSI1.300e-5578.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:214153..219343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2512
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_009730.1
Cds size372
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.58.1prot_P-littoralis_Contig191.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 216115..218869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789919.7097626-UTR-P-littoralis_Contig191:214152..2161141680789919.7097626-UTR-P-littoralis_Contig191:214152..216114Pylaiella littoralis U1_48UTRP-littoralis_Contig191 214153..216114 -
1680789919.7520704-UTR-P-littoralis_Contig191:218869..2189001680789919.7520704-UTR-P-littoralis_Contig191:218869..218900Pylaiella littoralis U1_48UTRP-littoralis_Contig191 218870..218900 -
1680789919.7628589-UTR-P-littoralis_Contig191:219196..2193431680789919.7628589-UTR-P-littoralis_Contig191:219196..219343Pylaiella littoralis U1_48UTRP-littoralis_Contig191 219197..219343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789919.7209778-CDS-P-littoralis_Contig191:216114..2161761680789919.7209778-CDS-P-littoralis_Contig191:216114..216176Pylaiella littoralis U1_48CDSP-littoralis_Contig191 216115..216176 -
1680789919.7296984-CDS-P-littoralis_Contig191:216486..2167421680789919.7296984-CDS-P-littoralis_Contig191:216486..216742Pylaiella littoralis U1_48CDSP-littoralis_Contig191 216487..216742 -
1680789919.7397368-CDS-P-littoralis_Contig191:218815..2188691680789919.7397368-CDS-P-littoralis_Contig191:218815..218869Pylaiella littoralis U1_48CDSP-littoralis_Contig191 218816..218869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.58.1

>prot_P-littoralis_Contig191.58.1 ID=prot_P-littoralis_Contig191.58.1|Name=mRNA_P-littoralis_Contig191.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MMAGKKNYSYTNLADTPQHGEIIESSYLLGEKGPKSTWTKVLEMAVLLAT
IGGCAYLFLFLFHNGNHHTAPAKESASHPQPPVGASSSTLLDPASCHKNP
KCLELDGLCCPDDKGDYLSCCSD*
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mRNA from alignment at P-littoralis_Contig191:214153..219343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.58.1 ID=mRNA_P-littoralis_Contig191.58.1|Name=mRNA_P-littoralis_Contig191.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5191bp|location=Sequence derived from alignment at P-littoralis_Contig191:214153..219343- (Pylaiella littoralis U1_48)
GTTATAACGACAGGTATGTGAACAGAGGATCCTCTTTTCGCATACTTGTC
ATTACCCATTGGTGCGAAGTGGAAGTACCGCGAGTGCAAGCAACAAGTTG
GAGCTGGTTGCGTGGAACTTGCAGTCAAGTACTGAATACACGAAGAGGTG
AGGAACCCTACTGTAGGCATTTTGGTGGTAGAGGAGCGGAATGTATGTCG
TTCAAGTTGCGGCTAGTGCCTCCTGTTTACTACCATCTGGGTCTCGCTTA
CATGTACAACAGCACTGCTGTGCTTGAGATGAATGACACTGGCATCATCT
TTGCATCCTGCTTGTACTGCTGCTTAAGCTGCAGCTTTGTTTTTTCCTGT
GACTGCTTGGTCTGTCTGTCTGTCTGTCTGTCCGCCTCTCTCATGCACAC
ACGCAATTATCGTGCAAACGCATAATCATTCGGTGCCCTGTAGGGCCAAC
AGCCCCCACGACACGCTGCTGACCATGATGGCGGGCAAGAAAAACTACAG
CTACACCAACTTGGCAGACACGCCGCAGGTGAGAGCTGTTGTTTACCACT
TTCGAAGTGTACTCCTGTTTCATGATTACTGAAAAAAACTCATGTGTTGA
CTTCCCCTGTGTGACCCCAGAGCGTCGACCTACCCGGAAGGTGCAGAGTG
GCGTCCAATTAAAGGGATGACAACACACACATACGGTTTGTTGAGATGCA
TATGATACTCATACATCGGTATCACGCATGATGCACCTATGATAGAAAAT
CATGTTGCAGGATATCTGCCAAGTATTTTCTCCTTCATAATACCCCTGTA
GCAGTGTAGTGTTCGGCCAAAGTCGACCGGCAGGCTCGTACAGCAGTACA
ATGTACCACTCTGTTCCGGAATATAGTTCCGGTTTGGCTGTCCGGGAATA
TAGTTCCGGTTTTGGATTAGGTGTTTCGAAAAAGATTTCAGCCCGAAAAC
TTTCGCGGCAACACTCCTATAGCCTTTACAAGATGGATGGATGCAAAAAA
TCATCTAGAAAATCGGGGATGGTTCATTATCATCCCCCCCCCCGGATCGT
GGGGGTTCCTCAAGAAATTTTCGGTAAGGAAAAGTGACATTTTTCGAAAT
GCTCTCACGAGGCCAAGACTTCGTTTTTTTTCGTTTTTTTTTGGACTTTG
TCTTCCAACCCTCTGCCTTTCATTTCCGCCCTCTTTTGGCCATGTCCAAC
ACGTTTTCCCAACTCAACCGGGGAAATTACTTTTGTTCATCAACAAGGTG
CCACTTTGGCAACAAAAAAAAGAAAGACAAAACAAAAATGAAAAAAAAAA
AAAATGGTATGTGTAGCAAAAAAGGTGCCGATGCCGGGGCTCGAACCCGC
GTATCAAAATTCGAAGTCAGTCCCAAGATATCTGCTCTTCCATGAAACTG
GAACTACATTCCGGAACAGAGTGGTATACATCATGAGAATAATTCCAGAT
CGTGTTACGCACCGGGATTCGAACTCAAGCGTAAGTGTTAGAAGATTTCG
AGGATAATCAACTGAACCACCGGGGCGACCGGTTGTGAGTAATAGTTAGA
AATAGCCCCCCCCTCTTTCACCCAAATGTTTGGTGGCTTTTTTACGCAGA
ACCACAGCAGCAGCCAGTGCATGGCATTCTGAAGTCGCAGCAAACACAAG
AGCTTTCTTGCTACAAAACGAAAGTTCTCAAAATTTCAAAAAACTCGGTT
TCGGATGAACGTCAATGCTGGGATGAGATGTCGAGATGTCGAGATGTCGC
TCATATGCTACGAAACAAAAAGAGAGAGCGACCTTGGATATTTTCCCTCC
TCCCAGGTATGGTATGGGGCTTTGATCCTCTCAACAGAGAGATGGTGAGA
GGTTAACTCAAACGTTTCCCGTGTGACGTTGAGATCCCCTGCGGCAATGG
CTGTTGCCGCATTGGTTGCTCCCCGTTCTTGGTTCTTTCGTTGCTGCCGC
TTTTAAAAGTCTAATTCTCGTTTCGAGACCTGGGTATGCAATCAACCCTG
GCTGAGATAAGATACCACACACGGGACGCCCTGAACGATTTGAACTCTCG
TTTTTTTTCTCTTTGGCGTGATGCTTTTATCGTATCATACGATACCTCTT
TGATGGAAAGCTCTTGACGAGATAGTTCCAACGCTTCTTTCAATTTTGGG
CACCTTCACTCTTTCTGTGGTGGGGTTATCGAGCTTTGAAAATCGGCCTG
GGGGTCCTGTATCTCGTGCCAGCAGTACGATAGCAGTAGTACCGTACGAG
CCAGAGGTGCAAGTTTTTCTGACCGGTGCAAAACAGTACACACCGACAAG
CGCTGTTTAGTTGCTCACTTGCTCAACTTGTTAAGCGGGGGCGGCGACAT
GCGCAGGCGAGCAATCAGGAATCTTTATCGTAGAGGCTCCGCCTTTAATG
TACGTATGTAGCGACGTGTAGGAATCGATTCAGCATGGGACTGCAGAGAA
CTCGCAACGCATCGTAGTTGCAGGTGATACGCAGACTCGTCGCCCTTGAG
TGCTTAACGCTATATTTTCCCGCCCTGCTGGAATCGAGTGTTACATCGCA
TTTAATTTCATCCTTACCCGCTTTTTTCCGTTGACCTTCCTTGCACTTTA
GCACGGGGAGATCATCGAGTCCTCGTACCTGCTGGGGGAGAAGGGCCCAA
AGTCAACATGGACAAAGGTGCTGGAAATGGCGGTGCTACTGGCCACCATC
GGCGGATGCGCCTACCTGTTTCTGTTCTTATTTCATAACGGCAACCACCA
TACCGCACCCGCTAAGGAATCGGCATCGCATCCACAACCACCCGTAGGGG
CTAGCTCCTCGACGTTGCTCGACCCTGCGTCTTGTCACAAAAACCCGAAG
TGCTTAGGTGAGCGAGGCTGGTTGGTGTTGGTTTTGGTCGGCGTGTTTGC
TTTGTCCATCGGGTACGACAGCTCGCTTTGCCTGCGACGGGCACCCGCCG
ATACCGCAGTGCAATGTGTCCAAAGAGTGCATGCTGTGTTGTTCAATCGA
TATCCTCGCTTTTTGGCATGAAAGGGTGTTCCTTTTCAATTTTTGGCAAC
CAGAATGTGGCTGACAGCTCTTCTCTCTCTATCTCTCTTTCTCTCTCTCT
CTCTCTCTCTTGCACCCTTGGTGTTGTTGCCTTCATTTTGACACTCTACT
GCCCTATCGCCATCAAGAACTGGATGGCTTGTGCTGCCCCGACGACAAGG
GCGATTATCTGTCGTGCTGCTCAGATTGAGGGGTGGTGACCCCGTGTCTT
GCCTTTTATCGACTGGTTGCTGCTGGCCGCAGCGCTACAATAGAGCCCGG
TGCAATACACCACGCCCGCCCAGAGTACGTTACGGGAGCTCAGCTGCCGA
ATCGAGGGGTTGTGATCCCGACCTGGCCCGGTTTGTGAGTGTCTTGATTG
AACCATGTACTCTTGTATCAGAGTTTTGAATTATCATGTACCTGGTAAAG
TTTTTGGGTGAGCACCACCTCCGCTGCGACAGCAGTCGTGTGGCAAAAGC
GATTTGAACACGCTGCCGTATTTCAGCGCGGTGTTGCCACAAAAATAACC
CTTTGTGCAAGAATGTTTTTTTTTTGTGTGTGTCGGCATCCGCACGTTGT
GGATGTCGTGCTGTCAAACGCCTGCCCTAGATGTTGTAGACTTTTCCCTC
CATGCGTGTTCTCTTTCTCTGACGTGGTGTTGAATTTTACGAGTTTATTT
TTAGCGTGGAGTTTTCGCAACATAGAAGCTCGTGAACGAATCGGGTGAGG
TCTGGCGGTTGCATCGAAGCGAACCAGCGCGATTTCCGTTCGATGATAAC
TTGGCTTGGCTTGGCAACGTCCAATTTCTTCGGATGCATCATGCCTTGCC
TAGTAACATATGGCATCATCTCGGGCTGGCCTTTCAGGGCGGTCACCTTG
GTTTGCATAAAACAAAAACGCCATTTTCTCAAGGCCGTGAGCGGGAGTAG
GACAGGGGGGGGTGTTTTTTTGCAAGGGGCGTGGCCCGTGTAGCGTCCTT
ATGTGCTTTAGTGCATGACCCAGTTGTTTTGTTTTGATGTTGAATGGATT
CGGAAAAGTGGTTCCTGATTTTGATGTGCAAAATCCACGTGCTGTGAGGA
TTCAGGGAGATGGCCAGGAACATGCAAAATGGCAATTTCTTGTCCTTCCG
CCAATCAAAAAGTGCCGAGACCGAATGCTGTTGTGTGTGCCGTCAGTTTT
GTTATGCCACCTTTTCGGCGATACAGAATCCTTGCATACCTGCAACGAAC
CGGCCGCTCAGAGGCTTTTGATGGGTGGTCGGCACATGCACGACGTTGGT
CGCAGAGCCAACCGTACGACCGACAAAACCGTTCCCCTCACTTCAACCCT
TGGAGAACGGTATCCCACGTCGTGTGGCATGAATCTGACGGCATTTGTCG
AAAGGAAGTTGATTACGGGACTTAGCCCGGGTAAGGGTGGTGAAGCAACC
GCGCTGAGCGCACGACCGCAGCAACAGGTCAATGGAAGTTAACACACGTC
GGCCCCAAGCAAGATACTTGTTACCATGTGCGGGAGGTGGAACACGAAAT
ATGTTTGAAGTTTTCAAGGCTGCAAATACGCTGATGAAGTGGTACTTGAA
CCGTGTGAGCAGGTCAACAAATCTGTCCGCGAATGACTGCTTTCTGTAGT
GCCCCAATATGCGGCCAGACTTTGCAGCGGACAGGAGTCCCGTGCTAGGT
ACATTACATTCGCGACTAGCAGCTGAAAATTGAAAATCTGAATGGCAAAA
GGAAAACATAGAGGCGGGGCCGGATGTGCAACCACGTGAAGGGCACACGA
ACACGTCCACCACCGCGCTCAAAACAAAAAATACAGGCTGCATGTGTACC
GGCAGCAAACTATTGGGTCTTCTTGCAGTGCTGAGCGACCATTGTTCGAA
GCTTATCCTCCGCAGCACCCGTGGTACTGTCCACCTTTGCACCTTTCCGT
AACACCTGGTACAGCCCGACGACGTGTTGAGTGACATGAGCAAACAATAC
GAGAAAACATTACCGCGTTTCAGTCGCACCCCAAAAGGTTCAAAAAGAAA
CCCGCTCGAATGCAAGCAAAGGGACATGAACTCTCGTATTCAAAGCATCA
TATGACAGCAACTTTCAAATCTCAGAGCTTGTCGGAACATCCATTCATCG
GGAAACATCAAACCGGCTCGCACGTAAGGTATGATTTCATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:214153..219343-

>mRNA_P-littoralis_Contig191.58.1 ID=mRNA_P-littoralis_Contig191.58.1|Name=mRNA_P-littoralis_Contig191.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig191:214153..219343- (Pylaiella littoralis U1_48)
ATGATGGCGGGCAAGAAAAACTACAGCTACACCAACTTGGCAGACACGCC
GCAGCACGGGGAGATCATCGAGTCCTCGTACCTGCTGGGGGAGAAGGGCC
CAAAGTCAACATGGACAAAGGTGCTGGAAATGGCGGTGCTACTGGCCACC
ATCGGCGGATGCGCCTACCTGTTTCTGTTCTTATTTCATAACGGCAACCA
CCATACCGCACCCGCTAAGGAATCGGCATCGCATCCACAACCACCCGTAG
GGGCTAGCTCCTCGACGTTGCTCGACCCTGCGTCTTGTCACAAAAACCCG
AAGTGCTTAGAACTGGATGGCTTGTGCTGCCCCGACGACAAGGGCGATTA
TCTGTCGTGCTGCTCAGATTGA
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